BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02470.1
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935990 jgi|Araly1|935990|scaffold_500181.1 1225 0.0
Ahg471625 jgi|Araly1|471625|fgenesh2_kg.1__1579__AT1G14510.1 747 0.0
> Ahg935990 jgi|Araly1|935990|scaffold_500181.1
Length=805
Score = 1225 bits (663), Expect = 0.0
Identities = 756/799 (95%), Gaps = 14/799 (2%)
Strand=Plus/Plus
Query 245 CATCGT-T-TGTGAAATGGAGGGAATTACTCATCCAATACCTCGTACTGTTGAAGAGGTC 302
|||||| | || |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 6 CATCGTCTGTGAGAAATGGAAGGAATCACTCATCCAATACCTCGTACTGTTGAAGAGGTC 65
Query 303 TTTAGCGACTTCAGAGGTCGACGAGCTGGTCTTATTAAAGCTCTCACTAATGATATGGTG 362
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 66 TTTAGCGACTTCAGAGGTCGACGAGCTGGTCTTATTAAAGCTCTCACAAATGATATGGTG 125
Query 363 AAGTTTTACCAAACGTGTGATCCTGAGAAGGAGAATTTGTGTCTCTATGGACTTCCAAAT 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 AAGTTTTACCAAACGTGTGATCCTGAGAAGGAGAATTTGTGTCTCTATGGACTTCCAAAT 185
Query 423 GAGACATGGGAGGTTAATCTACCCGTTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 GAGACATGGGAGGTTAATCTACCCGTTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCT 245
Query 483 TTAGGCATCAATTTCGCTAGAGACGGAATGCAAGAAAAGGACTGGGTATCTTTGGTCGCA 542
|| ||||| || ||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 246 TTGGGCATTAACTTCGCAAGAGATGGAATGCAAGAAAAGGACTGGGTGTCTTTGGTCGCG 305
Query 543 GTTCACAGTGATTCATGGCTGCTTTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTT 602
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GTTCACAGTGATTCATGGTTGCTTTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTT 365
Query 603 GGCAAGAATGAGAGGAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGAA 662
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GGTAAGAACGAGAGGAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGAA 425
Query 663 GTTGTGAGC-G--GCAATGCAAAGCAGTCCAAGGATCTATCTGTTAACAACAATAATAGC 719
||||||||| | |||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 426 GTTGTGAGCGGCAGCAATGCAAATCAGTCCAAGGATCTATCTGTTAACAACAGCAATAGC 485
Query 720 AAAAGCAAACCTAGTGGCGTCAAGTCTCGCCAATCCGAATCTCTCTCAAAGGTTGCAAAG 779
|||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||
Sbjct 486 AAAAGCAAACCTAGTGGCATCAAGTCGCGCCAATCCGAATCTCTCACAAAGGTTGCAAAG 545
Query 780 ATGTCATCTCCACCGCCAAaagaagaagaagaagaagaagatgagagtgaagatgagagt 839
||||||||||||||||||||||||||||| || | || || ||| | || || | ||
Sbjct 546 ATGTCATCTCCACCGCCAAAAGAAGAAGATGATG-AG-AG-TGA-A--GACGA-G-GA-A 596
Query 840 gaagaCGATGAACAAGGTGCGGTTTGTGGTGCTTGTGGAGACAACTACGGTACAGATGAG 899
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 597 GAGGACGATGAACAAGGTGCGGTTTGTGGCGCTTGTGGAGACAACTACGGTACAGATGAG 656
Query 900 TTCTGGATTTGCTGCGACGCGTGTGAGAAATGGTTCCATGGAAAATGTGTGAAGATAACA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTCTGGATTTGCTGCGACGCGTGTGAGAAATGGTTCCATGGAAAATGTGTGAAGATAACA 716
Query 960 CCTGCAAAAGCAGAACACATCAAGCATTACAAATGCCCAACTTGCAGTAACAAGAGAGCT 1019
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 717 CCTGCAAAAGCAGAACACATCAAGCATTACAAATGCCCAAGTTGCAGTAACAAGAGAGCC 776
Query 1020 AGACCTTGAAGTTAAATAA 1038
||||||||||||| |||||
Sbjct 777 AGACCTTGAAGTTTAATAA 795
> Ahg471625 jgi|Araly1|471625|fgenesh2_kg.1__1579__AT1G14510.1
Length=1261
Score = 747 bits (404), Expect = 0.0
Identities = 648/761 (85%), Gaps = 35/761 (5%)
Strand=Plus/Plus
Query 258 ATGGAGGGAATTAC-TCATCCAATACCTCGTACTGTTGAAGAGGTCTTTAGCGAC-TTCA 315
||||| |||||| | ||||| |||||||| ||||| |||||||||||||||||| |||
Sbjct 219 ATGGAAGGAATT-CAGCATCCTATACCTCGCACTGTCGAAGAGGTCTTTAGCGACTTTC- 276
Query 316 GAGGTCG-ACGAGCTGGTCTTATTAAAGCTCTCACTAATGATATGG--TGAAGTTTTACC 372
| ||||| | |||||||||| || || |||||| ||| || |||| |||||||||||
Sbjct 277 GTGGTCGTA-GAGCTGGTCTCATCAAGGCTCTCTCTACTG--ATGGACAGAAGTTTTACC 333
Query 373 AAAC-GTGTGATCCTGAGAAGGAGAATTTGTGTCTCTATGGACTTCCAAATGAGACATGG 431
| | |||||| ||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 334 -ATCAGTGTGACCCTGAGAAGGAAAACTTGTGTCTTTATGGACTTCCAAATGAGACATGG 392
Query 432 GAGGTTAATCTACCCGTTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCTTTAGGCATC 491
||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 393 GAGGTTAATCTTCCCGTTGAGGAGGTCCCTCCTGAGCTTCCTGAACCAGCGTTAGGCATC 452
Query 492 AATTTCGCTAGAGACGGAATGCAAGAAAAGGACTGGGTATCTTTGGTCGCAGTTCACAGT 551
||||||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct 453 AATTTCGCTAGGGACGGAATGCAAGAAAAAGACTGGATATCTTTGGTTGCAGTTCACAGT 512
Query 552 GATTCATGGCTGCTTTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAAT 611
||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 513 GATTCATGGCTTATCTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGTAAGAAT 572
Query 612 GAGAGGAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGAAGTTGTGAGC 671
|||||||||||||| ||||||||||| ||||| || |||||||||||||| ||||| | |
Sbjct 573 GAGAGGAAGAGGCTCTTCCAGATGATAAATGATCTCCCAACCATTTTCGAGGTTGTAA-C 631
Query 672 -GGCAATGCAAAGCAGTCCAAGGATCTATCTGTTAACAACAATAATAGCAAAAGCAAACC 730
|||||||||||||| |||||||||| ||||| |||| |||| | ||||| ||||||| |
Sbjct 632 TGGCAATGCAAAGCAATCCAAGGATCAATCTGCTAACCACAACAGTAGCAGAAGCAAATC 691
Query 731 TAGTGGCGTCAAGTCTCGCCAATCCGA-ATCTCTCTCAAAGG-TTGCAAAGATGTCATCT 788
| | || | |||| |||| || || || | ||| | | |||| || |||||||||| |
Sbjct 692 TGGCGGTGGCAAGCCTCGTCATTCTGATA-CTCACACTAAGGCTT-CAAAGATGTC--C- 746
Query 789 CCACCGCCAAaagaagaagaagaagaagaagatgagagtgaagatgagagtgaagaCGAT 848
||||| |||| ||||||||| || || | | |||| ||| | ||| | |||| |||
Sbjct 747 CCACCACCAAGAGAAGAAGATGA-GA-GC-G--GAGA-TGA-G--GAG-G--AAGATGAT 794
Query 849 GAACAAGGTGCGGTTTGTGGTGCTTGTGGAGACAACTACGGTAC-AGATGAGTTCTGGAT 907
||||||||||| |||||||| || |||||||||||||| || | |||||||||||||||
Sbjct 795 GAACAAGGTGCTGTTTGTGGCGCGTGTGGAGACAACTATGG-AGGAGATGAGTTCTGGAT 853
Query 908 TTGCTGCGACGCGTGTGAGAAATGGTTCCATGGAAAATGTGTGAAGATAACACCTGCAAA 967
|| || || || || ||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 854 ATGTTGTGATGCTTGCGAGAAATGGTTCCATGGAAAATGCGTGAAGATCACACCAGCAAA 913
Query 968 AGCAGAACACATCAAGCATTACAAATGCCCAACTTGCAGTA 1008
|| || |||||||| |||||||||||||||| ||||||||
Sbjct 914 GGCTGAGCACATCAAACATTACAAATGCCCAAGTTGCAGTA 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5