BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02480.1
Length=4163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484163 jgi|Araly1|484163|fgenesh2_kg.5__155__AT2G02480.1 6495 0.0
Ahg920337 jgi|Araly1|920337|scaffold_101618.1 1580 0.0
> Ahg484163 jgi|Araly1|484163|fgenesh2_kg.5__155__AT2G02480.1
Length=4042
Score = 6495 bits (3517), Expect = 0.0
Identities = 3884/4058 (96%), Gaps = 37/4058 (1%)
Strand=Plus/Plus
Query 1 CTCGCAGTCGCAGGCGACTATCAAGTTTCAGAACTCGAGA-T--TCATCATTCTCTGTTC 57
|||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||
Sbjct 1 CTCGCAGTCGCAGGCGACTAAC-AGTTTCAGAACTCGAGATTCATCATCATTCTCTGTTC 59
Query 58 CACTTCCGGCG-ATGTATTATAATCCCTAGACCTTAGTTCCGGCGAACTCTCGAAGAACA 116
||| |||||| ||| ||||||||||||||||||||||||||||||||| |||| | |
Sbjct 60 CACCGCCGGCGAATG---TATAATCCCTAGACCTTAGTTCCGGCGAACTCTGGAAGTAGA 116
Query 117 AACAAGTTTTGAAATGTCAGTGAAAACGCGAAGCTGAGAGAGGAGAAGGAAGAAATCGAA 176
||||| ||||||||||||| ||||||| ||||||||||||| | | ||||||||||||||
Sbjct 117 AACAATTTTTGAAATGTCACTGAAAACTCGAAGCTGAGAGA-G-G-AGGAAGAAATCGAA 173
Query 177 GGAAGCTGATTCAAATTTAGGAAGAAGAAAAAATGTCAGGTTCGAGAGTTTCGGATCTGA 236
|||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct 174 GGAAGCTGATTCAAATTT-TG--GAAG-AAAAATGTCAGGTTCGAGAGTTTCGGATCTGA 229
Query 237 GTAAATTGCATCTGAAGAAGGAGCTGACTCAAATCAGAAAAGCTGGCCGTGTTTTACGCG 296
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 230 GTAAATTGCATCTGAAGAAGGAGCTTACTCAAATCAGAAAAGCTGGCCGTGTTTTACGCG 289
Query 297 ATCCAGGTACTACTTCCTCCTGGAAATCTCCTCTCGATTCGTCAAGATCCGTCGCGCTTT 356
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 290 ATCCAGGCACTACTTCCTCGTGGAAATCTCCTCTCGATTCGTCAAGATCCGTCGCGGTTT 349
Query 357 TGGAGACTCCGGCGAGCAGAAACGGTGGCAGTTCGAGTCAGTTTCCGATTCGAGGAGAGA 416
| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 350 TCGAGACTCCGGCGAGTAGAAACGGTGGGAGTTCGAGTCAGTTTCCGATTCGAGGAGAGA 409
Query 417 GTAGTACTAATCGTCGTGGGAAAGAGAAGAAGGTGTTTTTGTATAACTGGAAGACTCAGA 476
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 410 GTAGTACTAA---TCGTGGGAAAGAGAAGAAGGTGTTCTTGTATAACTGGAAGACTCAGA 466
Query 477 AATCTTCTAGTGAGAAAAGTGGATTAGCTAAGAATGGTaaggaagaag-ag--gaagaag 533
|||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||
Sbjct 467 AATCTTCTAGTGAGAAAAGTGGGTTAGCTAAGAATGGTAAGGAAGAAGAAGAAGAAGAAG 526
Query 534 aagaagaTGCTTCTTCGTGGACGCAAGCTAGTGTTAATGATGATGATGATGTGAGTGATG 593
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 527 AAGAAGATGCTTCTTCGTGGACTCAAGCTAGTGTTAATGATGATGATGATGTGAGTGACG 586
Query 594 CGAGGAATGGTGGTGATT-C----GT-A-TCGTA-----GAGAAATACAATCAGCTTCGA 641
|||||||||||||||||| | || | || || |||| || |||||||||||||
Sbjct 587 CGAGGAATGGTGGTGATTCCAAGAGTGATTCATATCTTGGAGATATCCAATCAGCTTCGA 646
Query 642 TGGGTTTTAGGTGTAGAGATACGAATCTAGCGTCACAAGGTGTGTCAAAGATGAGGAAGA 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 647 TGGGTTTTAGGTGTAGAGATACGAATCTAGCGTCACAAGGTGTGTCAAAGATGAGAAAGA 706
Query 702 GTAATGTTGGTAGTTGTAAGAAGAAGAGTAAGaaaaaaaTTAGCTCTTCTCGTTTGGATT 761
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 707 GTAATGTTGGTAGTTGTAAGAAGAAGAGTAAGCAAAAAATTAGCTCGTCTCGTTTGGATT 766
Query 762 GTTTGTCAAAGTATCAACCTAGAGATGACATTGTTGCTAGAAATTGTAATGCTGGATCAG 821
|||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 767 TTTTGTCAAAGTACCAACCTAGAGAAGATATTGTTGCTAGAAACTGTAATGCTGGATCAG 826
Query 822 ATGACACAGAGGAGGAATTGAGTAATTCAGAGGATTTGAGGAAGGTCACTGGTGCGTCTC 881
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 827 ATGATACAGAGGAGGAATTGAGTAATTCAGAGGATTTTAGGAAGGTTACTGGTGCATCTC 886
Query 882 CTTTGCTTTTGAAGCTTAAGCAGAAGAACTGGTCACGTTCTTCGTCAAGATTGTTGAGAG 941
|||||||| |||||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct 887 CTTTGCTTAAGAAGCTGAAGCAGAAGAACTGGTCACGTTCTTCATCAAAATTGTTGAGAG 946
Query 942 CTAATAATAGAAAAGAGGATTCTTCATGTACTTATAATAGTACACCGGCTTTATCCACTA 1001
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 947 CTAATAATAGAAAAGAGGATTCTTCATGTACGTATAATAGTACACCGGCTTTATCCACTA 1006
Query 1002 GTTCGTACAATATGTATGCTGTTCGTAATCCCAGCACTGTTGGATCTTGGGATGGTACCA 1061
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1007 GCTCGTATAATATGTATGCTGTTCGTAATCCAAGCACTGTTGGATCTTGGGATGGTACCA 1066
Query 1062 CGACTTCGGTGAATGATGGTGATGATGAGTTGGATGATAACTTGGATTTACCAGGGAGGC 1121
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 CGACTTCGCTGAATGATGGTGATGATGAGTTGGATGATAACTTGGATTTACCAGGGAGGC 1126
Query 1122 AAGGATGTGGTATTCCGTGTTATTGGACGAAGAAGGCGATGAAACATAGAGGCGGATGCA 1181
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1127 AAGGTTGTGGCATTCCGTGTTATTGGACGAAGAAGGCGATGAAACATAGAGGTGGATGCA 1186
Query 1182 GAAGTTGTTGCTCTCCATCGTTTTCGGATACTTTGAGAAGAACCGGAAGTAGCATTTTGT 1241
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GAAGTTGTTGTTCTCCATCGTTTTCGGATACTTTGAGAAGAACCGGAAGTAGCATTTTGT 1246
Query 1242 GTGGGAGTCAATCTGTGTATCGTAGACATAATAGACATTCTTCTGGAGGGTATAGTAAAC 1301
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1247 GTGGGAGTCAATCTGTGTATCGTAGACATAATAGACATTCTTCTGGAGGGTATATTAAAC 1306
Query 1302 AAAAAATTGCTTGTAGAAGTGCACAAGGTGTTTTACCTTTACTCAGTTACGGTGGTGATG 1361
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1307 AAAAAATTGCTTGTAGAAGTGCACAAGGTGTTTTACCTTTACTCACATATGGTGGTGATG 1366
Query 1362 GTAGAGGAGGGTCTTCTTTAGGAACCGGGCTTAGTGATGATGAGCTTTCTACCAATTATG 1421
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1367 GTAGAGGAGGGTCTTCTTTAGGAACCGGGCTTAGTGATGACGAGCTTTCCACCAATTACG 1426
Query 1422 GAGAGCTTGATTTAGAGGCTCAGAGTAGATTAGACGGGAGGAGGTGGTCTACTAGTTATA 1481
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1427 GAGAGCTTGATTTAGAGGCTCAGAGTAGATTAGATGGGAGGAGGTGGTCTACTAGTTATA 1486
Query 1482 GGAGTCAAGATGGTTTGGAGGCTGTAGCGTTAGATGGAGAAGAAGAAGAAGGAAGTACAC 1541
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1487 GGAGTCAAGATGGTTTGGAGGCTGTAGCGTTAGATGGAGAAGGAGAAGACGGAAGTACAC 1546
Query 1542 CGGAAACAATCCGAAGCTTCAGCCAAAAGTACAGACCAATGTTTTTTGAGGAATTGATTG 1601
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 CGGAAACAATCCGAAGTTTCAGCCAAAAGTACAGACCAATGTTTTTTGAGGAATTGATTG 1606
Query 1602 GACAAAGTATAGTGGTTCAATCGTTAATGAACGCTGTTAAAAGGAGTAGGATCGCTCCTG 1661
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1607 GACAGAGTATAGTGGTTCAATCGTTAATGAACGCTGTAAAAAGGAGTAGGATCGCTCCTG 1666
Query 1662 TTTATCTTTTCCAGGGTCCTAGAGGAACTGGTAAAACATCAACCGCAAGGATTTTTTCAG 1721
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1667 TTTATCTTTTCCAGGGTCCTAGAGGAACTGGTAAAACATCAACCGCAAGAATTTTTTCAG 1726
Query 1722 CCGCCCTGAATTGTGTGGCCACTGAAGAAATGAAGCCTTGTGGGTACTGTAAAGAGTGCA 1781
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 CCGCCCTAAATTGTGTGGCCACTGAAGAAATGAAGCCTTGTGGGTACTGTAAAGAGTGCA 1786
Query 1782 ATGATTTCATGTCTGGGAAAAGTAAGGATTTTTGGGAACTTGATGGAGCTAATAAGAAGG 1841
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 ATGAGTTCATGTCTGGGAAAAGTAAGGATTTTTGGGAACTTGATGGAGCTAATAAGAAGG 1846
Query 1842 GAGCTGATAAGGTTAGGTACCTTTTAAAAAACCTACCGACGATACTTCCACGAAATTCCT 1901
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1847 GAGCTGATAAGGTTAGGTACCTTTTAAAAAACCTACCGACGATACTTCCACGGAATTCCT 1906
Query 1902 CAATGTACAAGGTTTTTGTGATAGACGAGTGTCATTTGCTGCCATCGAAGACGTGGCTGT 1961
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1907 CAATGTACAAGGTTTTTGTGATAGACGAGTGTCATTTGCTGCCATTGAAGACTTGGCTGT 1966
Query 1962 CTTTTCTTAAGTTTCTTGAAAACCCTCTGCAGAAAGTTGTCTTCATATTTATAACTACTG 2021
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1967 CTTTTCTTAAGTTTCTTGAGAACCCTCTGCAGAAAGTTGTCTTCATATTTATAACAACTG 2026
Query 2022 ACCTTGAAAATGTTCCCCGGACCATTCAGTCAAGGTGCCAGAAGTTTCTCTTTGACAAAC 2081
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2027 ACCTTGAAAATGTTCCTCGGACCATTCAGTCAAGGTGCCAGAAGTTCCTCTTTGATAAAC 2086
Query 2082 TCAAAGATTCTGACATAGTAGTGAGACTAAAGAAAATTGCTTCAGACGAAAATCTTGATG 2141
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2087 TCAAAGATTCTGACATAGTAGTGAGACTAAAGAAAATTGCTTCAGATGAAAATCTAGATG 2146
Query 2142 TAGACTTGCATGCGTTGGACCTGATTGCTATGAACGCGGATGGCTCACTTCGAGATGCTG 2201
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2147 TAGACTTGCATGCGTTGGACCTGATTGCTATGAACGCAGATGGCTCACTTCGAGATGCTG 2206
Query 2202 AAACTATGTTGGAGCAGCTGAGTTTGCTGGGAAAACGCATCACCACAGCTTTAGTAAACG 2261
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 2207 AAACTATGTTGGAGCAGCTGAGTTTGCTGGGAAAACGCATCACCACTGCTCTAGTAAACG 2266
Query 2262 AGCTAGTTGGTGTTGTTTCAGATGAAAAATTGTTGGAACTCTTGGAATTAGCATTGTCTT 2321
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2267 AGCTAGTGGGTGTTGTTTCAGATGAAAAATTGTTGGAACTCTTGGAATTAGCATTGTCTT 2326
Query 2322 CTGACACAGCAGAGACTGTTAAGCGAGCTAGAGAGTTGTTGGACCTTGGAGCTGACCCAA 2381
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 CTGACACGGCAGAGACCGTGAAGCGAGCTAGAGAGTTGTTGGACCTTGGAGCTGACCCAA 2386
Query 2382 TAGTCTTGATGTCTCAACTCGCCAGTCTTATTATGGATATCATTGCTGGTACATACAAGG 2441
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2387 TAGTCTTGATGTCTCAACTCGCCAGTCTTATCATGGATATCATTGCTGGTACATACAAGG 2446
Query 2442 TCGTAGATGAAAAATACAGCAACGCCTTCTTTGACGGAAGAAACTTGACTGAAGCAGATA 2501
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2447 TCGTAGATGAAAAATACAGCAACGCCTTCCTTGACGGAAGAAACTTGACTGAAGCAGATA 2506
Query 2502 TGGAGGGATTAAAGCATGCTTTGAAACTTCTTTCTGAGGCTGAGAAGCAGCTGAGAGTTT 2561
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2507 TGGAGGGATTAAAGCATGCTTTGAAACTTCTTTCTGAGGCTGAGAAGCAGCTTAGAGTTT 2566
Query 2562 CTAATGACCGTTCAACATGGTTCACAGCGACTTTGCTTCAGCTTGGGTCAATGCCTTCTC 2621
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2567 CTAATGACCGTTCAACATGGTTCACAGCGACTTTGCTTCAGCTTGGGTCAATGCCATCTC 2626
Query 2622 CTGGCACCACACATACAGGCAGTAGTAGAAGGCAAAGCTCTAGAGCAACTGACGATGACC 2681
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2627 CTGGCACCACACATACAGGAAGTAGTAGAAGGCAAAGCTCTAGAGCAACTGACGATGACC 2686
Query 2682 CAG-CAAGCGTTTCAAGGGAAGTGATGGCTTACAAACAGAGAATAGGAGGACTTCACTTT 2740
| | ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2687 C-GTCAAGCATTTCAAGGGAAGTGATGGCTTACAAACAGAGAATAGGAGGGCTTCACTTT 2745
Query 2741 AGTAAGTCGGCATCTCCAGCTTCGGTTATAAAAAGGAACGGGAATCATTCCCATGAAGCG 2800
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2746 AGTAAGTTAGCATCCCCAGCTTCGGTTATAAAAAGGAACGGGAATCATTCCCATGAAGCG 2805
Query 2801 AAACCATTCTCCAGGGTTATCGATAATAACTGCTATAAATCCTCCTCATCTAGCCAAATG 2860
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2806 AAAGCATTCTCCAGGGTTATCGATAATAACTGCTATAAATCCTCCTCATCTAGCCAAGTT 2865
Query 2861 ATAGAGAGCGAAGGTTCCATTGCCTCACATGAAAATAGCATCGCAAGCACCATGATGCTT 2920
||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 2866 ATAGAGAGCGAAGCTTCCATTGCCTCGCATGAAAATAGCGTCGCAAGCACCATGATGCTT 2925
Query 2921 AATCAAAGAAGTTCAGAGAAACTTAACGATATATGGAGAAAATGTATTGAAAGATGTCAC 2980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2926 AATCAAAGAAGTTCAGAGAAACTTAACGATATATGGAGAAAATGTATTGAAAGATGTCAC 2985
Query 2981 TCAAAGACACTGAGGCAGCTGCTCTATACTCATGGGAAACTTATATCTATCAGTGAAGTT 3040
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2986 TCCAAGACACTGAGGCAGCTGCTCTATACTCATGGGAAACTTATATCTATCAGTGAAGTT 3045
Query 3041 GAGGGTATTCTCGTTGCTTATATCGCGTTTGGAGAAAAC-GATATCAAACTGAGAGCTGA 3099
|| ||||| || |||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 3046 GAAGGTATACTAGTTGCTTATATCGCGTTTGGAG-AAACTGATATCAAATTGAGAGCTGA 3104
Query 3100 AAGGTTTCTAAGCAGTATCACAAACTCGATTGAAATGGTACTAAGGCGAAGCGTAGAGGT 3159
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3105 AAGGTTTCTAAGCAGTATCACAAACTCGATCGAAATGGTACTAAGGCGAAGCGTAGAGGT 3164
Query 3160 CAGGATAATTCTCTTGCCTGAAACCGAGTTACTCGTTGTCCCTCACCAAACCCGGAAACC 3219
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3165 CAGGATAATCCTCTTGCCTGAAACCGAGTTACTCGTCGTCCCTCACCAAACCCGGAAACC 3224
Query 3220 AGAAATGACCAACAAAAGTGGGCATCTAAATAACATCGCTGGTTTAAATGCCGAAACAGA 3279
||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| ||||
Sbjct 3225 CGAAATGACCAACAAAAGTGGGCATCTAAATACCATCACTGGTTTAAATGCTGAATCAGA 3284
Query 3280 TGTTGAAGTTGGTAGCAGCGTGGAAAGCAGATCAAAACTCCCGATGCAAAGGATAGAATC 3339
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 3285 TGTTGAAGTTGGTAGCAGCGAGGAAAGCAGATCAAAACTCCCAATGCAAAGGATAGAATC 3344
Query 3340 AATCATCAGAGAACAAAGATTAGAAACCGCTTGGTTACAAACCGCTGATAAAGACACACC 3399
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3345 GATCATCCGAGAACAAAGATTAGAAACCGCGTGGTTACAAACCGCTGATAAAGACACACC 3404
Query 3400 TGGATCGATAATACGGGTAAAACCCGAAAGGAATCAGATTCTACCTCAAGAAGACACTTA 3459
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 3405 TGGATCGATAATACGGGTAAAACCCGAAAGAAATCAAATTCTACCTCAAGAAGACACTTA 3464
Query 3460 TCGCCAAACTAACGTAGCTTCTGCTATTTCTTCTTCTGGCCTAACCACTCACCAATGGGT 3519
||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 3465 TCGCCAACCTAACGTAGCTTCTGCTATTTCTTCTTCTGGACTAACCACTCACCATTGGGT 3524
Query 3520 AGATGAGCTAAACAATGAAGTTAAGCTTTTGAAAATCGGCGACAATGGTGAGCTTCAGGA 3579
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3525 AGATGAGTTAAACAATGAAGTTAAGCTTCTGAAAATCGGCGACAATGGTGAGCTTCAGGA 3584
Query 3580 GAATCTAACCGGTACAAGAGGACAGCATTGTCCTCTTTCCCCAAGCTTACTTCATGATAC 3639
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3585 GAATCTAACTGGTACAAGAGGACAGCATTGTCCTCTTTCCCCAAGCTTACTTCATGATAC 3644
Query 3640 TAACTTCGGAAACAACAAAGACAATCTAGGAGGATACGAATCAGGATCAGGAAGAGTTGG 3699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3645 TAACTTCGGAAACAACAAAGACAATCTAGGAGGATACGAATCAGGATCAGGAAGAGTTGG 3704
Query 3700 TTGTAATATATTATTTTGTTGGAACACAAAAAAGACTCAGAGACGAAGCAAGTCGAAACA 3759
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3705 TTGTAATATATTATTTTGTTGGAAGACAAAAAAGACTCAGAGACGAAGCAAGTCGAAACA 3764
Query 3760 GGTCAAGGGAACTCCTGTTCGTTCGCGGAGAAATCGGAAGAGTCGGTTCTCTCTGTTTAA 3819
||| || ||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 3765 GGTTAAAGGAACTCCTGTTCGTTCCCGGAGAAATCGGAAGAGCCGATTCTCTCTGTTTAA 3824
Query 3820 TGGATGTGCTAAGCCAAGGAAAGCAGAAGGTAACATTAGAAGATGAAACTAAGTTCTTTA 3879
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3825 TGGATGTGCTAAGCCAAGGAAAGCAGAAGGTAACATTAGAAGATGAAACTAAGTTCTTAA 3884
Query 3880 GTCATGAAAAACAAAATTGTTCCCTCAAGCTCTAATTTATCATCTGTTCTTCCACTTCCA 3939
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3885 GTCATGAAAAACAAAATTGTTCCCTCAAGCTCTAATTTATCATATGTTCTTCCACTTCCA 3944
Query 3940 CATAGTTTTCCCTTAATTATGTTTGATAATGATATGTCAAAGGACAGTTTTAATATATTC 3999
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 3945 CATAGTTTTTCCTTAATTCTGTTTGATAATGATATGTCAAAGGACAGTTTTAATTTATTC 4004
Query 4000 ACTGTAAAGTTCCTATCCATTTTTGTTATCTATCTTAT 4037
|||||||||||| |||||||||||||||||||||||||
Sbjct 4005 ACTGTAAAGTTCTTATCCATTTTTGTTATCTATCTTAT 4042
> Ahg920337 jgi|Araly1|920337|scaffold_101618.1
Length=3434
Score = 1580 bits (855), Expect = 0.0
Identities = 1581/1916 (83%), Gaps = 112/1916 (6%)
Strand=Plus/Plus
Query 878 TCTCCTTTGCTTTTGAAGCTTAAGCAGAAGAACTGGTCACGTTCTTCGTC-AAGATTGTT 936
||||||||||||| ||| || ||||| |||||||||||||| |||||||| ||| || ||
Sbjct 685 TCTCCTTTGCTTTCGAAACTAAAGCACAAGAACTGGTCACGCTCTTCGTCTAAG-TTCTT 743
Query 937 GAGAGCTAATAAT-AGAAAAGAGGATTCTT-CATGTACTTATAATAGTACACCGGCTTTA 994
|||||||| || | || | ||||||||||| | | ||||| ||| |||||||| || ||
Sbjct 744 GAGAGCTACTAGTAAG-AGAGAGGATTCTTCCCT-TACTTGTAACAGTACACCTGCATTG 801
Query 995 TCCACTAGTTCGTACAATATGTATGCTGT-TC-GTAATCCCAGCACTGTTGGATCTTGGG 1052
|| ||||| || ||||||||||||| || || ||||||| ||||| || || || ||||
Sbjct 802 TCAACTAGCTCATACAATATGTATG--GTATCGGTAATCCTAGCACCGTCGGGTCGTGGG 859
Query 1053 ATGGTACCACGACTTCGGTGAATGATGGTGATGATGAGTTGGATGATAACTTGGA-TTTA 1111
| | || | |||| |||| ||| | || | | |||||||||||||| ||||
Sbjct 860 A--G------GA--T-GGTG-ATGA---TGA-GTTG-GAT-GATGATAACTTGGATTTTA 901
Query 1112 CCAGGGAGGCAAGGATGTGGTATTCCGTGTTATTGGACGAAGAAGGCGA--TGAAACATA 1169
|||||| ||||| ||||| ||||| | ||||||||| ||| ||| | |||| ||||
Sbjct 902 -AAGGGAGACAAGGTTGTGGGATTCCTTTTTATTGGACCAAG-AGG-AATCTGAAGCATA 958
Query 1170 GAGGCGGATGCAGAAGTTGTTGCTCTCCATCGTTTTCGGATACT-TTGAGAA-GAACCGG 1227
|||| ||||| || ||||||||||| || ||||||||||||||| || |||| ||| ||
Sbjct 959 GAGGTGGATGTAGGAGTTGTTGCTCACCTTCGTTTTCGGATACTCTT-AGAAGGAA-AGG 1016
Query 1228 AAGTAGCATTTTGTGTGGGAGTCAATCTGTGTATCGTAGACATAATAGACATTCTTCT-G 1286
|||||||||||| || ||||||||||| | ||||||||||| |||| ||||| ||| |
Sbjct 1017 AAGTAGCATTTTATGCGGGAGTCAATCGGCGTATCGTAGAC---ATAGGCATTCCTCTGG 1073
Query 1287 GAGGGTATAGTAAACAAAAAATTGCTTGT-AGAAGTGCACAA-GGTGTTTTACCTTTACT 1344
|| | |||| |||||| || |||||| | ||||||||| || |||||||||||||| ||
Sbjct 1074 GA-GATATAATAAACAGAAGCTTGCTT-TAAGAAGTGCA-AAGGGTGTTTTACCTTTGCT 1130
Query 1345 CAGTTACGGTGGTGATGGTAGAGGAGGGTCTTCTTTAGGAACCGGGCT-TAGTGATGATG 1403
|| || ||||||||| ||||||||||||| ||| |||||| ||| | |||||||||||
Sbjct 1131 CAAATATGGTGGTGATAGTAGAGGAGGGTCATCTATAGGAATTGGG-TGTAGTGATGATG 1189
Query 1404 AGCTTTCTACCAATTAT-GGAGAGCTTGATTTAGAGGCTCAGAGTAGATTAGACGGGAGG 1462
| |||||||| ||| | ||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1190 ATCTTTCTACTGATT-TCGGAGAGCTTGATTTAGAAGCTCAAAGTAGATTAGATGGGAGG 1248
Query 1463 AGGTGGTCTACTAGTTATAGGAGTCAAGATGGTTTGGAGGCTGTAGCGTTAGATGGAGAA 1522
|| ||||||||| ||| || |||||| ||||| ||| || | ||| ||||
Sbjct 1249 AGATGGTCTACTTGTTGTAAGAGTCAGGATGG---GGA-----AAGAG-AAGA-GGAG-- 1296
Query 1523 GAAGAAGAAGGAAGTACACCGGAAACAATCCGA-AGCTTCAGCCAAAAGTAC-AGACCAA 1580
|||||||||||||||||||| |||| |||| | ||||| |||||||||||| || ||||
Sbjct 1297 GAAGAAGAAGGAAGTACACCCGAAAGTATCC-AGAGCTTGAGCCAAAAGTACAAG-CCAA 1354
Query 1581 TGTTTTTTGAGGAATTGATTGGACAAAGTATAGTGGTTCAATCGTTAATGAACGCTGT-T 1639
|||| ||||| ||| ||||||| || |||||||| ||||| ||| |||||| ||||||
Sbjct 1355 TGTTCTTTGATGAACTGATTGGGCAGAGTATAGTTGTTCAGTCGCTAATGAGCGCTGTGA 1414
Query 1640 AAAAGGAGTAGGATCGCTCCTGTTTATCTTTTCCAGGGTCCTAGAGGAACTGGTAAAACA 1699
|||||| ||||||| |||| |||||||||||| || ||||||||||||||||| || |||
Sbjct 1415 AAAAGG-GTAGGATTGCTCATGTTTATCTTTTTCAAGGTCCTAGAGGAACTGGGAAGACA 1473
Query 1700 TCAACCGCAAGGATTTTTTCAGCCGCCCTGAA-T-TG-TGTGGCCACTGAAGAAATGAAG 1756
|| ||||| || ||| |||| || |||||||| | || | ||| |||||||||||||||
Sbjct 1474 TCTACCGCGAGAATTCTTTCGGCTGCCCTGAACTGTGATCTGGTCACTGAAGAAATGAAA 1533
Query 1757 CCTTGTGGGTACTGTAAAGAGTGCAATGATTTCATGTCT-GGGAAAAGTAAGGATTT-TT 1814
||||||||||| || ||||| |||| ||||| |||| || |||||||||| |||||| |
Sbjct 1534 CCTTGTGGGTATTGCAAAGAATGCAGTGATTACATG-CTAGGGAAAAGTAGGGATTTGCT 1592
Query 1815 GGGAACTTGATGGAGCTAATAAGAAGGGAGCTGATAAGGTTAGGTACCTT-TTAAAAAAC 1873
||||||||||| | ||| ||||| |||||||| || |||||||||||| | ||||||
Sbjct 1593 -GGAACTTGATGCTGGTAAGAAGAATGGAGCTGAGAAAGTTAGGTACCTTATGAAAAAA- 1650
Query 1874 CTACCGACGA-TA-CTTCCACGAAATTCCT-CAATG-TACAAGGTTTTTGTGATAGACGA 1929
|| ||| | || | ||||| | ||| || ||| | |||||||||||||||||||| ||
Sbjct 1651 CTGTTGAC-ATTAGC-TCCAC-AGATTTCTCCAA-GATACAAGGTTTTTGTGATAGATGA 1706
Query 1930 GTGTCATTTGCTGCCATCGAAGACGTGGCTGTCTTTTCTTAAGTTTCTTGAAAACCCTCT 1989
||||||||| | ||||| | ||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 1707 GTGTCATTTATTACCATCTAGGACATGGCTATCTTTACTCAAGTTTCTTGAGAACCCTCT 1766
Query 1990 GCAGAAAGTTGTCTTCATATTTATAACTACTGACCTTGAAAATGTTCCCCGGACCATTCA 2049
|||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||
Sbjct 1767 GCAGAAAGTTGTCTTCATATGTATAACTACTGACCTTGACAATGTTCCTCGGACCATTCA 1826
Query 2050 GTCAAGGTGCCAGAAGTTTCTCTTTGACAAACTCAAAGATTCTGACATAGTAGTGAGACT 2109
||||||||||||||||| ||||| ||||| ||| |||| |||||| || ||||||||
Sbjct 1827 GTCAAGGTGCCAGAAGTACCTCTTCAACAAAGTCAGAGATGGTGACATTGTTGTGAGACT 1886
Query 2110 AAAGAAAATTGCTTCAGACGAAAATCTTGATGTAGACTTGCATGCGTTGGACCTGATTGC 2169
|| ||||||||||| ||| |||||||| ||||| || | || || ||||||||||||||
Sbjct 1887 AAGGAAAATTGCTTTAGATGAAAATCTGGATGTGGAATCACAGGCTTTGGACCTGATTGC 1946
Query 2170 TATGAACGCGGATGGCTCACTTCGAGATGCTGAAACTATGTTGGAGCAGCTGAGTTTGCT 2229
| |||| || |||||||| ||||||||||||||||| |||||||||||| |||||||| |
Sbjct 1947 TTTGAATGCTGATGGCTCGCTTCGAGATGCTGAAACCATGTTGGAGCAGTTGAGTTTGAT 2006
Query 2230 GGGAAAACGCATCACCACAGCT-TTAGTAAACGAGCTAGTTGGTGTTGTTTCAGATGAAA 2288
||||||||| |||||| | | || ||||| ||||| || ||||||||||||||||| |
Sbjct 2007 GGGAAAACGAATCACCGTTGATCTT-GTAAATGAGCTTGTGGGTGTTGTTTCAGATGATA 2065
Query 2289 AATTG-TTGGAACTCTTGGAATTAGCATTGTCTTCTGACACAGCAGAGACTGTTAAGCGA 2347
||||| ||| |||||||||||||||| |||||||||||||| |||||||| |||||| |
Sbjct 2066 AATTGCTTG-AACTCTTGGAATTAGCGTTGTCTTCTGACACGGCAGAGACCGTTAAGAAA 2124
Query 2348 GCTAGAGAGTTGTTGGACCTT-GGAGCTGACCCAATAGTCTTGATGTCTCAACTCGCCAG 2406
||||||||||| ||||| || |||||||| ||| || || ||||||||||||| |||||
Sbjct 2125 GCTAGAGAGTTACTGGAC-TTAGGAGCTGATCCAGTACTCATGATGTCTCAACTAGCCAG 2183
Query 2407 TCTTATTATGGATATCATTGCTGGTA-CATACAAGGTCGTAG-ATGAAAAATACAGC-AA 2463
|||||| ||||||||||||||||| | ||||||||| | | | | |||||||||||| ||
Sbjct 2184 TCTTATCATGGATATCATTGCTGG-AGCATACAAGG-CTTTGGACGAAAAATACAGCGAA 2241
Query 2464 CGCCTT-CTTTGACGGAAGAAACTTGACTGAAGCAGATATGGAGGGATTAAAGCATGCTT 2522
||||| ||| || |||| |||||||||||||| ||| ||||| || |||||||||||
Sbjct 2242 -GCCTTTCTT-GATAGAAGGAACTTGACTGAAGCTGATTTGGAGAGACTAAAGCATGCTC 2299
Query 2523 TGAAACTTCTTTCTGAGGCTGAGAAGCAGCTGAGAGTTTCTAATGACCGTTCAACATGGT 2582
|||||||||||||||| |||||||| ||||| |||||||||| ||| |||||||||||||
Sbjct 2300 TGAAACTTCTTTCTGAAGCTGAGAAACAGCTTAGAGTTTCTACTGATCGTTCAACATGGT 2359
Query 2583 TCACAGCGACTTTGCTTCAGCTTGGGTCAATGCCTTCTCCTGGCACCACACATACAGGCA 2642
||| ||| || ||||| |||||||| ||| ||||||||||||| ||||||||||| || |
Sbjct 2360 TCATAGCTACCTTGCTGCAGCTTGGTTCAGTGCCTTCTCCTGGAACCACACATACTGGTA 2419
Query 2643 GTAGTAGAAGGCAAAGCTCTAGAGCAACTGACGATGACCCAGCAAGCGTTTCAAGGGAAG 2702
| ||||||||||||||||||||||||||||| || | |||| ||||||| ||||
Sbjct 2420 GCAGTAGAAGGCAAAGCTCTAGAGCAACTGAAGA--A---AGCA----TTTCAAGAGAAG 2470
Query 2703 TGATGGCTTACAAACAGAGAATAGGAGGACTTCACTTTAGTAAGTCGGCATCTCCA 2758
| || ||||||||||||||| | ||| ||||| | |||||| || ||||| |||
Sbjct 2471 TTATTGCTTACAAACAGAGA-TC--AGGTCTTCAATGTAGTAATTCAGCATCCCCA 2523
Score = 327 bits (177), Expect = 3e-88
Identities = 300/359 (84%), Gaps = 10/359 (3%)
Strand=Plus/Plus
Query 2840 TCCTCCTCATCTAGCCAAATGATAGAGAGCGAAG-GTTCCATTGCCTCACATGAAAATAG 2898
|||||||||||||| || | ||||||| | || |||||||||||| ||||| |||
Sbjct 2569 TCCTCCTCATCTAGGGAAGTCTTAGAGAGTG-AGACTTCCATTGCCTCGCATGACGATA- 2626
Query 2899 CATCG-CAAGCACCATGATGCTTA-ATCAAAGAAGTTCAGAGAAACTTAACGATATATGG 2956
|| || ||||| |||||| |||| | |||| |||||||||||| || ||||| |||
Sbjct 2627 CAACGACAAGCTCCATGACCCTTACGT-GCAGAAATTCAGAGAAACTAAATGATATCTGG 2685
Query 2957 AGAAAATGTATTGAAAGATGTCACTCAAAGACACTGAGGCAGCTGCTCTATACTCATGGG 3016
| ||| ||| | || |||||||| || ||||| ||| |||||| || ||| ||||||||
Sbjct 2686 ATAAAGTGTGTGGACAGATGTCATTCGAAGACGTTGAAGCAGCTTCTATATGCTCATGGG 2745
Query 3017 AAACTTATATCTATCAGTGAAGTTGAGGGTATTCTCGTTGCTTATATCGCGTTTGGAGAA 3076
|| ||| ||||||||||||||||||| ||||| || ||||||||||| || |||||||||
Sbjct 2746 AAGCTTTTATCTATCAGTGAAGTTGAAGGTATCCTAGTTGCTTATATTGCATTTGGAGAA 2805
Query 3077 A-ACGATATCAAA-CTGAGAGCTGAAAGGTTTCTAAGCAGTATCACAAACTCGATTGAAA 3134
| | || |||||| || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2806 AGA-GAGATCAAAGCT-AGAGCTGAAAGGTTTGTAAGCAGTATCACAAACTCGATTGAAA 2863
Query 3135 TGGTACTAAGGCGAAGCGTAGAGGTCAGGATAATTCTCTTGCCTGAAACCGAGTTACTC 3193
|||||||| |||||| |||||||||||||||||| |||||| ||||||| || ||||||
Sbjct 2864 TGGTACTACGGCGAAACGTAGAGGTCAGGATAATCCTCTTGTCTGAAACTGAATTACTC 2922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157406121928
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5