BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G02498.1

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935992 jgi|Araly1|935992|scaffold_500183.1                        366    6e-101
  Ahg931408 jgi|Araly1|931408|scaffold_303865.1                       93.5    1e-18 


> Ahg935992 jgi|Araly1|935992|scaffold_500183.1
Length=366

 Score =  366 bits (198),  Expect = 6e-101
 Identities = 309/363 (85%), Gaps = 5/363 (1%)
 Strand=Plus/Plus

Query  1    AATCACAAACAAAATTATGAAAATGATGGTAAAGCTCTATCCAATAACAACCGTGGTTAC  60
            |||||||||||||| |||||||||||| || ||| ||| |||||||||||  ||||||||
Sbjct  6    AATCACAAACAAAAATATGAAAATGATTGTGAAGTTCTCTCCAATAACAATGGTGGTTAC  65

Query  61   CTTGCTCTTTCTTGCATTTGGTCTTGCCCTTGCTAGATACCCGACTTTTCCAACCGAGCC  120
            | || ||||||||| |||||||||||||| |||||||||||| ||||| |||| || |  
Sbjct  66   CCTGTTCTTTCTTGTATTTGGTCTTGCCCATGCTAGATACCCAACTTTACCAATCGTGAA  125

Query  121  ATTTCCTCCTCCACCAAACCAGAATGAGAATATATCAGTAAACCAATTTCAAGTTATCCC  180
            |  ||||||||||||||||||||||| ||| ||||||||||||||| ||||||   ||||
Sbjct  126  ACCTCCTCCTCCACCAAACCAGAATGTGAAGATATCAGTAAACCAAATTCAAG---TCCC  182

Query  181  ACATCTACCATGGCCTCCAAAACGCCCAGGACATCCACCCCACCAAAATGCCAAA-GTCG  239
             ||||||||||  |||||||||   |||||||||||||| |||||||||  |||| ||  
Sbjct  183  GCATCTACCATCTCCTCCAAAATATCCAGGACATCCACCACACCAAAAT-ACAAAGGTAT  241

Query  240  CAGTGAACCAATACCCGGGCATAATTCCAATTCCTCATTATCCAGAACCTCCAAAACATC  299
            ||||||| ||||  || ||| || ||||||||||||||||||||||||||||||||||||
Sbjct  242  CAGTGAATCAATTTCCAGGCGTATTTCCAATTCCTCATTATCCAGAACCTCCAAAACATC  301

Query  300  CAGGACATCCGCCTTATCAGTATCCGAAGATATCACCGAACTAATACTCATACATATGTT  359
            |||||||||| ||  | ||  || |||| ||||||  |||||||||| ||||||||||||
Sbjct  302  CAGGACATCCACCACACCAAAATGCGAAAATATCATTGAACTAATACCCATACATATGTT  361

Query  360  TTT  362
            |||
Sbjct  362  TTT  364


> Ahg931408 jgi|Araly1|931408|scaffold_303865.1
Length=259

 Score = 93.5 bits (50),  Expect = 1e-18
 Identities = 114/143 (80%), Gaps = 11/143 (8%)
 Strand=Plus/Plus

Query  31   AAAGCTCTATCCA-ATAACAACCGTGGTTACCT-TGCTCT-TTCTTGCATTTGGTCTTGC  87
            ||| |||| | || |||| ||  ||||||| || || | | ||||||||||||| |||||
Sbjct  6    AAA-CTCTCT-CAGATAAAAATGGTGGTTA-CTCTG-TTTCTTCTTGCATTTGGCCTTGC  61

Query  88   CCTTGCTAGATACCCGACTTTTCCAACCGAGCCATTTCCTCCTCCACCAAACCAGAA-TG  146
             |  ||| |||  || ||||| ||||||||||||||||||||||||||||||| ||| ||
Sbjct  62   TCAGGCTCGATTTCCAACTTTCCCAACCGAGCCATTTCCTCCTCCACCAAACC-GAAGTG  120

Query  147  -AGAATATATCAGTAAACCAATT  168
             | || |  ||||| ||||||||
Sbjct  121  TA-AAGACCTCAGTGAACCAATT  142



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16063502969


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5