BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02500.1
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896190 jgi|Araly1|896190|Al_scaffold_0005_156 1269 0.0
> Ahg896190 jgi|Araly1|896190|Al_scaffold_0005_156
Length=903
Score = 1269 bits (687), Expect = 0.0
Identities = 822/886 (93%), Gaps = 13/886 (1%)
Strand=Plus/Plus
Query 63 TTAC-TTCTCCGACATTTCTGTGTCCGAAGCTTAAAGTCAAATTGAACTC---TTATCTG 118
|||| || |||||||||| | |||||||||||| |||||||| || ||| || ||||
Sbjct 23 TTACATT-TCCGACATTTTTATGTCCGAAGCTTGTAGTCAAATCGATCTCAGTTTCTCTG 81
Query 119 TGG-TTTAGCTATCG-TTCTCAAGTTCAAAAACTGGATTTTTCGAAAAGGGTTAATAGAA 176
|| ||||||||||| ||| |||||||||||||| ||||||| |||||||||||||||||
Sbjct 82 -GGCTTTAGCTATCGTTTC-CAAGTTCAAAAACTTGATTTTTTGAAAAGGGTTAATAGAA 139
Query 177 GCTACAAAAGAGATGCTTTATTATTGTCAATCAAGTGTTCTTCATCGACTGGATTTGATA 236
| |||||||| |||| ||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct 140 GATACAAAAGGGATGGTTTGTTATTGTCAATAAAGTGTTCTTCGTCTACTGGATTTGATA 199
Query 237 ATAGCAATGTTGTTGTGAAGGAGAAGAGTGTATCTGTGATTCTTTTAGCTGGAGGTCAAG 296
||||||||| ||||||||||||||| ||||| || |||||||| ||||||||||||||||
Sbjct 200 ATAGCAATGCTGTTGTGAAGGAGAAAAGTGTCTCAGTGATTCTATTAGCTGGAGGTCAAG 259
Query 297 GCAAGAGAATGAAAATGAGTATGCCAAAGCAGTACATACCACTTCTT-GGTCAGCCAATT 355
|||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||
Sbjct 260 GCAAGAGAATGAAAATGAGTATGCCAAAGCAGTATATACCACTT-TTGGGTCAGCCAATT 318
Query 356 GCTTTGTATAGCTTTTTCACGTTTTCACGTATGCCTGAAGTGAAGGAAATTGTAGTTGTA 415
|||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct 319 GCTTTGTATAGCTTTTTCACATTTTCACGTATGCCTCAAGTGAAGGAAATTGTTGTTGTA 378
Query 416 TGTGATCCTTTTTTCAGAGACATTTTTGAAGAATACGAAGAATCAATTGATGTTGATCTT 475
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TGTGATCCATTTTTCAGAGACATTTTTGAAGAATACGAAGAATCAATTGATGTTGATCTC 438
Query 476 AGATTCGCTATTCCTGGCAAAGAAAGACAAGATTCTGTTTACAGTGGACTTCAGGAAATC 535
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 439 AGATTTGCTATTCCTGGGAAAGAAAGACAAGATTCTGTTTACAGTGGACTTCAGGAAGTC 498
Query 536 GATGTGAACTCTGAGCTTGTTTGTATCCACGACTCTGCCCGACCATTGGTGAATACTGAA 595
||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||
Sbjct 499 GATGTGAACTCTGAGCTTGTTTGCATCCACGACTCTGCCAGACCGCTGGTGAATTCTGAA 558
Query 596 GATGTCGAGAAGGTCCTTAAAGATGGTTCCGCGGTTGGAGCAGCTGTACTTGGTGTTCCT 655
||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 559 GATGTCGTGAAGGTCCTTAAAGATGGTTCCGCGGTTGGCGCAGCCGTACTTGGTGTTCCT 618
Query 656 GCTAAAGCTACAATCAAAGAGGTCAATTCTGATTCGCTTGTGGTGAAAACTCTCGACAGA 715
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 619 GCTAAAGCTACAATCAAAGAGGTCAATTCTGAATCGCTTGTGGTGAAAACTCTCGACAGA 678
Query 716 AAAACCCTATGGGAAATGCAGACACCACAGGTGATCAAACCAGAGCTATTGAAAA-AGGG 774
||||| || |||||||||||||||||||||||||||||||| ||| ||||||| | |||
Sbjct 679 AAAACACTTTGGGAAATGCAGACACCACAGGTGATCAAACCCGAGTTATTGAAGAGAGG- 737
Query 775 TTTCGAGCTTGTAAAAAGTGAAGGTCTAGAGGTAACAGATGACGTTTCGATTGTTGAATA 834
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 738 TTTCGAGCTTGTGAAAAGAGAAGGTCTAGAGGTAACAGATGATGTTTCGATTGTTGAATA 797
Query 835 CCTCAAGCATCCAGTTTATGTCTCTCAAGGATCTTATACAAACATCAAGGTTACAACACC 894
|||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 798 CCTCAAACATCCAGTTTTTGTCACTCAAGGATCTTATACAAACATCAAGGTTACAACACC 857
Query 895 TGATGATTTACTGCTTGCTGAGAGAATCTTGAGCGAGGACTCATGA 940
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 858 TGATGACTTACTGCTTGCTGAGAGAATCTTGAGCGAGGACTCATGA 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41592102447
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5