BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G02510.1

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484164 jgi|Araly1|484164|fgenesh2_kg.5__156__AT2G02510.1          621    1e-177


> Ahg484164 jgi|Araly1|484164|fgenesh2_kg.5__156__AT2G02510.1
Length=435

 Score =  621 bits (336),  Expect = 1e-177
 Identities = 410/444 (92%), Gaps = 11/444 (2%)
 Strand=Plus/Plus

Query  14   ATCGAAGAAGACCGGAGAAAATGGCGAAACCGTTGGGAACAACCGGTGAATTTTTCCGGC  73
            ||||| ||||||||||||||||||||||||| |||||| | ||||| |||||||||||||
Sbjct  1    ATCGACGAAGACCGGAGAAAATGGCGAAACCATTGGGATCTACCGGAGAATTTTTCCGGC  60

Query  74   GAAGGGATGAGTGGAGGAAGCATCCGATGCTATCGAATCAAATGAGACACGCACTTCCAG  133
            |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GAAGAGATGAATGGAGGAAGCATCCGATGCTATCGAATCAAATGAGACACGCACTTCCAG  120

Query  134  GTATCGGAATCGGTGTTGGTGCCTTCTGCGTTTACCTCGTCGGTGAACAGATCTATAGCA  193
            || ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct  121  GTCTCGGAATCGGTGTTGCTGCTTTCTGCGTTTATCTCGTCGGTGAACAGATCTATAGCA  180

Query  194  AACTCATGGCTCCTTCTTCTCAATCATCGCATCAGAAACAACCCGCTCCATCTCACTGAG  253
            ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  181  AACTCATGGCTCCTTCTTCTCAATCATCGCATCAGAAACAACCTGCTCCGTCTCACTGAG  240

Query  254  AGAATCA-TTAGATTGTTTCGATGATGAAAACCGTGGCAGATAAAGAGCTGATGGATTCA  312
            ||||||| ||||||| |||||||||||||| ||||||| |||||| |||||| |||||||
Sbjct  241  AGAATCAATTAGATTATTTCGATGATGAAA-CCGTGGCGGATAAAAAGCTGAGGGATTCA  299

Query  313  CAATTTGCTGttttttttGTTTCTTGGATTGTCTCAATAAGCTGTGAATGAAAGACAAAG  372
            |||||||| || |||||     |||||||||||||| |||||||||||||||||||||||
Sbjct  300  CAATTTGCCGTGTTTTT-----CTTGGATTGTCTCACTAAGCTGTGAATGAAAGACAAAG  354

Query  373  ACTCTGATCTCTATGTTGAATGTTATAATCTTGTATGACAGTTTCCAGTACATGGTTTCG  432
            ||| |||||||| |||||||||||||||||||||||||||||||||| ||  ||||||||
Sbjct  355  ACTTTGATCTCTCTGTTGAATGTTATAATCTTGTATGACAGTTTCCAATA--TGGTTTCG  412

Query  433  TTATGTGATT-TCTTTGCTTAATA  455
            ||||||| || |||||||||||||
Sbjct  413  TTATGTG-TTGTCTTTGCTTAATA  435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18390993898


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5