BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02515.1
Length=401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935995 jgi|Araly1|935995|scaffold_500186.1 411 3e-114
> Ahg935995 jgi|Araly1|935995|scaffold_500186.1
Length=321
Score = 411 bits (222), Expect = 3e-114
Identities = 286/316 (91%), Gaps = 7/316 (2%)
Strand=Plus/Plus
Query 1 ACACAAAACAAAATATGAAGATGATTCTGAAGCTCCCCGCAATAACAATGGTGGCTACTT 60
||||||| |||||||||||||||||| |||| |||||||||| ||||||||||| ||||
Sbjct 8 ACACAAATCAAAATATGAAGATGATTGTGAAACTCCCCGCAAAAACAATGGTGGTTACTC 67
Query 61 TGCTTCTTCTTGCATCTGGTCTTGGTCATGCTAGGATTGAACCTTTTTCTCCTACGCTAA 120
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 68 TGCTTCTTCTTGCATCTGGTCTTGGTCATGCTAGGGTTGAGCCTTTTTCTCCTACGCTAA 127
Query 121 AGCCAAAATTTCAAATCGATTCTAAACCGTTTAATCCACCGGTTATTCCAACCGAACCAT 180
| ||||||||||||| ||| |||||||||||| |||||||| |||| |||||||| ||||
Sbjct 128 ATCCAAAATTTCAAACCGACTCTAAACCGTTTTATCCACCGATTATCCCAACCGAGCCAT 187
Query 181 TTCCTCC---ACCTCCACCGAACCATGACGCGATGATATCAGTGCAA-CAATTCCCAGTT 236
||||||| ||||||| |||||||||| ||| ||||||||||| || ||||||||||||
Sbjct 188 TTCCTCCTCCACCTCCATCGAACCATGATGCGGTGATATCAGTG-AAGCAATTCCCAGTT 246
Query 237 ATACCTTATTGTCCTCCAGGTTATCAAAATCCCGGATGTCCACCATCATCTTAGACTGT- 295
| ||||||||||| ||| |||||||||||||| |||||||| |||||||||||||| ||
Sbjct 247 AGACCTTATTGTCGTCCTGGTTATCAAAATCCTGGATGTCCCCCATCATCTTAGAC-GTT 305
Query 296 CTCCAAAAAATGATAT 311
||||||||||||||||
Sbjct 306 CTCCAAAAAATGATAT 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14384657053
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5