BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02540.1
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484166 jgi|Araly1|484166|fgenesh2_kg.5__158__AT2G02540.1 1474 0.0
Ahg920334 jgi|Araly1|920334|scaffold_101615.1 302 5e-81
> Ahg484166 jgi|Araly1|484166|fgenesh2_kg.5__158__AT2G02540.1
Length=1081
Score = 1474 bits (798), Expect = 0.0
Identities = 958/1031 (93%), Gaps = 27/1031 (3%)
Strand=Plus/Plus
Query 128 TTATTCTCAAGAAAGGTTTCATTTTGAGATAAAGTTTGCTGCTCTTTCTGGTTG-TGGAT 186
|||||||||||||| |||||||||| ||||||||||||||||| |||||||||| | |||
Sbjct 4 TTATTCTCAAGAAAAGTTTCATTTTAAGATAAAGTTTGCTGCTTTTTCTGGTTGTTAGAT 63
Query 187 AGATCAAAAGAATGGAGATTGCAAGTCAAGAAGATCCTATTCCAATAAACACTAGTTATG 246
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 64 AGATCAAGAGAATGGAGATTGCAAGTCAAGATGATCCTATTCCAATAAACACTAGTTACG 123
Query 247 GTAATAGTGGAGGTGGGCATGGGAACATG----A--A-C--CATCATCATCATGCCAATT 297
|||||||||| |||||||||||||||||| | | | |||||||||||||||||||
Sbjct 124 GTAATAGTGGTGGTGGGCATGGGAACATGATCCATCATCTTCATCATCATCATGCCAATT 183
Query 298 CTGCACCATCATCTCTCAACATTACTACTTCAAACCCACTACTAGTCTCCTCAAATAGTA 357
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 184 CTGCACCATCATCTCTCAACATGACTACTTCAAACCCACTACTAGTCTCCTCAAATGGTA 243
Query 358 ATGGTCTTGGTAAAAATCATGATCATTCTCATCATCATCATGTGGGTTACAACATCATGG 417
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 244 ATGGTCTTGGCAAAAATCATGAACATTCTCATCATCATCATGTGGGTTACAACATCATGG 303
Query 418 T----TAC--CAACATCAAGAAAGAGAAGCCTGTGGTGATAAAGTACAAGGAATGCCTAA 471
| || |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 304 TCAGCAACAACAACATCAAGAAAGAGAAGCCTGTGGTGATCAAGTACAAGGAATGCCTAA 363
Query 472 AGAACCATGCAGCTACCATGGGAGGCAATGCCATTGATGGTTGTGGAGAGTTTATGCCAA 531
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AGAATCATGCAGCTACCATGGGAGGCAATGCCATTGATGGTTGTGGAGAGTTTATGCCAA 423
Query 532 GTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGCTCAGTTTGCAACTGCCATAGAAACT 591
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 424 GTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGTTCAGCTTGCAACTGCCATAGAAACT 483
Query 592 TTCATAGAAGAGAAACCGAAGGTGAAGAGAAAACATTCTTTTCCCCTTACCTCAACCACC 651
| ||||||||||||| ||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 484 TCCATAGAAGAGAAATTGAAGGTGAACAAAAAACCTTCTTTTCCCCTTACCTCAACCACC 543
Query 652 ACCAACCACCTCCGCAGCAGAGAAAACTCATGTTCCACCACAAGATGATCAAATCACCAT 711
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 ACCAACTACCTCCGCCGCAGAGAAAACTCATGTTCCACCACAAGATGATCAAATCACCAT 603
Query 712 TACCACAACAAATGATAATGCCTA-TTGGCGTTACAACCGCTGGATCCAACTCAGAGTCA 770
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 604 TACCACAACAAATGATAATGCC-AGTTGGCGTTACAACCGCTGGATCCAACTCAGAGTCA 662
Query 771 GAGGATCTTATGGAGGAAGAAGGCGGAGGAAGCTTGACATTCCGGCAGCCACCACCACCA 830
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 663 GAGGATCTTATGGAGGAAGAGGGCGGAGGAAGCTTGACATTCCGGCAACCACCACCACCA 722
Query 831 CCATCACCGTATAGTTACGGACATAATCAGAAGAAAAGGTTTAGGACAAAGTTTACACAA 890
||| || |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 723 CCACCATCGTATAGTTACGGACATAATCAGAAGAAGAGGTTTAGGACAAAGTTTACTCAA 782
Query 891 GAGCAAAAGGAGAAGATGATTAGTTTTGCGGAAAGAGTTGGTTGGAAGATTCAGAGACAA 950
||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct 783 GAGCAAAAGGAAAAGATGATGAGTTTTGCGGAGAGAGTTAGTTGGAAGATTCAGAGACAA 842
Query 951 GAGGAATCTGTTGTTCAACAGCTTTGTCAAGAGATTGGAATTAGGAGAAGAGTTCTTAAA 1010
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 843 GAGGAATCTGTTGTTCAACAGCTTTGTCAAGAGATCGGAATTAGGAGAAGAGTTCTTAAA 902
Query 1011 GTTTGGATGCACAACAACAAACAAAATCTCTCCAAGAAGAGCAACAAC------GTTAGT 1064
||||||||||||||||||||||| ||||| |||||||||||||||||| |||| |
Sbjct 903 GTTTGGATGCACAACAACAAACACAATCTATCCAAGAAGAGCAACAACAACAACGTTAAT 962
Query 1065 AACAATGTCGACCTTTCTGCTGGTAATAACGACA-T--TACTGAAAATCTTGCTTCTACT 1121
|||||||| || ||||||||||||||||| || | |||||||||| ||||||||| |
Sbjct 963 AACAATGTTGAGCTTTCTGCTGGTAATAATAACGCTACTACTGAAAATTTTGCTTCTATT 1022
Query 1122 AATCCTTAGTT 1132
|||||||||||
Sbjct 1023 AATCCTTAGTT 1033
> Ahg920334 jgi|Araly1|920334|scaffold_101615.1
Length=991
Score = 302 bits (163), Expect = 5e-81
Identities = 481/626 (77%), Gaps = 55/626 (9%)
Strand=Plus/Plus
Query 448 TGATAAAGTACAAGGAATGCCTAAAGAACCATGCAGCTA-CCATGGGAGGCAATGCCATT 506
|||||||||||||||| || || |||||||||||||| | | |||||||||||||||| |
Sbjct 292 TGATAAAGTACAAGGAGTGTCTCAAGAACCATGCAGC-AGCTATGGGAGGCAATGCCACT 350
Query 507 GATGGTTGTGGAGAGTTTATGCCAAGTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGC 566
||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 351 GATGGGTGTGGAGAGTTTATGCCAAGTGGTGAAGATGGCTCCATTGAGGCTCTCACTTGC 410
Query 567 TCAGTTTGCAACTGCCATAGAAACTTTCATAGAAGAGAAACCGAAGGTGAAGAGAAAACA 626
|||| |||||| ||||| |||||||| ||||||| |||| ||||| ||| | | |
Sbjct 411 TCAGCTTGCAATTGCCACAGAAACTTCCATAGAAAAGAAGTGGAAGGCGAACCGGCAGC- 469
Query 627 TTCTTTTCCCCTTACCTCAACCACCACCAACCACCTCCGCAGCAGAGAAAACTCATGTTC 686
| | || || || | |||||||||| ||||| || | || ||| |||||| ||
Sbjct 470 TACCG--CCATTTCCC-CTT--ACCACCAACCGCCTCCACACC-GA-AAA-CTCATGCTC 521
Query 687 CACCACAAGATGATCAAATCA-CCATTACCACAACAAATGATAATGCCTATTGGCGT-T- 743
||||| | | ||||| ||| |||| ||||| |||||||| ||||| ||||| || |
Sbjct 522 AACCACCACAAGATCAGGTCAGCCATG-CCACACCAAATGATCATGCCCATTGGAGTCTC 580
Query 744 -A-CAACCG---C-TGGATC-CAACTCAGAGTCAGAGGATCTT-ATGGAGGAAGAAGGCG 795
| | |||| | || || |||||| ||||| ||||| ||| ||||||||||| ||||
Sbjct 581 TAACTACCGGTACATGCATAACAACTCCGAGTCCGAGGA-CTTTATGGAGGAAGATGGCG 639
Query 796 GAGGAAGCTTGACATTCCGGCAGCCACCACCACCACCATCACCGTATAGTTACGGACATA 855
| | | || ||| |||| | | | | |||| ||| | | | ||| |
Sbjct 640 TA--A--C----CA--CCG-CAGCTAG-ATCGCTACCAA-ACC-T---GCCAT--ACA-A 679
Query 856 ATCAGAAGAAAAGGTTTAGGACAAAGTTTACACAAGAGCAAAAGGAGAAGATGATTAGTT 915
|||||||| ||||||||||||||||| || | || ||||||||||||||| | ||||
Sbjct 680 C-CAGAAGAAGAGGTTTAGGACAAAGTTCACGCCGGAACAAAAGGAGAAGATGCTGAGTT 738
Query 916 TTGCGGA-AAGAGTTGGTTGGAAGATTCAGAGACAAGAGGAATCTGTTGTTCAACAGCTT 974
|||| || || |||||| ||||| || || || ||||| || | |||||||||| || ||
Sbjct 739 TTGCTGAGAA-AGTTGGATGGAAAATACAAAGGCAAGAAGATTGTGTTGTTCAA-AGGTT 796
Query 975 T-GTCAAG-AGATTGGAATTAGGAGAAGAGTTCTTAAAGTTTGGATGCACAACAACAA-A 1031
| | | || |||||||| | | ||||||||| ||||| |||||||||||||||||||| |
Sbjct 797 TTG-CGAGGAGATTGGAGTGAAGAGAAGAGTCCTTAAGGTTTGGATGCACAACAACAAGA 855
Query 1032 -CAAAATCTCTCCAAGAAGAGCAACA 1056
| | | |||||||||||| |||||
Sbjct 856 TCCAT-T-TCTCCAAGAAGAACAACA 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44985042060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5