BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02570.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936001 jgi|Araly1|936001|scaffold_500192.1 1465 0.0
> Ahg936001 jgi|Araly1|936001|scaffold_500192.1
Length=943
Score = 1465 bits (793), Expect = 0.0
Identities = 895/945 (95%), Gaps = 3/945 (0%)
Strand=Plus/Plus
Query 104 GTTTTGAGTTTGG-GTAAAAAATGGTAGGAGGAGTAGAAGAATTGAGTATTGAACAGTTA 162
||||||||||||| | |||| |||| ||||||||| ||||||||||| || || ||||
Sbjct 1 GTTTTGAGTTTGGAG-AAAAGATGGAAGGAGGAGTTGAAGAATTGAGCATCCAAGTGTTA 59
Query 163 GCTTCGAGTATCTCTACCTACAAAGAACAACTCGAACAGGTTAGGCAGCTTTTGTCAGAG 222
||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 60 GCTTCGAATCTCTCTACCTACAAAGAACAGCTCGAACAGGTTAGGCAGCTTTTGTCAGAG 119
Query 223 GATCCTAGGAACTCGGAATATGCAGACATGGAAAAGGAGCTTAAAGAGGTGATTGCATTG 282
|| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GACCCTAGAAACTTGGAATATGCAGACATGGAAAAGGAGCTTAAAGAGGTGATTGCATTG 179
Query 283 ACAGAGGAAGTTCTTGCAACTGCAAAGCAAAATGAGATTTCTCTATCAGATGCCGGAGTT 342
||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 180 ACAGAAGAACTTCTTGCAACTGCAAAGCAAAATGAGATTTCTCTATCGGATGCTGGAGTT 239
Query 343 AGTGCTGAAGCAACTCCTGGCTCACCCGATTTAGAGGGTGCTTGGGAAAAGACGGGTTTA 402
||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||| |
Sbjct 240 AGTGCTGAAGCAACTACTGGCTCACCCGATTTAGAGAGTGCTTGGGAAAACATGGGTTCA 299
Query 403 AGGAATGACCCAATCCATGAGGGTAAGTTCCCTGTTGGAACTAAAGTTCAAGCTGTCTTT 462
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 AGGAATAACCCAATCCATGAGGGTAAGTTCCCTGTTGGAACAAAAGTTCAAGCTGTCTTT 359
Query 463 AGTGACGATGGCGAGTGGTATGATGCGACCATTGAGGCACATACTGCAAATGGCTATTTT 522
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 AGTGACGATGGCGAGTGGTATGATGCGACCATTGAGGCACATACTGCGAATGGCTATTTT 419
Query 523 GTTGCTTATGATGAGTGGGGAAACAAGGAAGAGGTGGATCCAGATAATGTGAGGCCAATC 582
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 420 GTTGCTTATGATGAGTGGGGAAACAAGGAAGAGGTTGATCCAGAAAATGTGAGGCCAATC 479
Query 583 GAGCAAAATGCTATTGTCGAAGCTGAGAGATTAGCTCAAGCTACCAAAAATGCTCTCAAA 642
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAGCAAAATGCTATCGTGGAAGCTGAGAGATTAGCTCAAGCTACCAAAAATGCTCTCAAA 539
Query 643 AGAAAGATTGAGAAAGCTGCGAGTTCTGATTATCAGACAAAAACTCTACCAGCAAAGCTC 702
|||||||||||| |||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 540 AGAAAGATTGAGCAAGCTGCGAGTTCTGACTACCAGACTAAAACTCTACCAGCAAAGCTT 599
Query 703 AAAATCGATCCTAATGATCCCGAGGATGTAAAAATAGCTAAGCGTAAGAAGATACATGCT 762
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 600 AAAATCGATCCTAATGATCCTGAGGATGTAAAAATAGCAAAGCGTAAGAAGATTCATGCT 659
Query 763 TTCAAATCCAAGGCAAGGTTTGAGCAACTCGAGGTTGTGCAGAACAAGAAACAGAATGAT 822
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 660 TTCAAGTCCAAGGCAAGGTTTGAGCAACTCGAGGTTGTACAGAACAAGAAACAGAATGAT 719
Query 823 TGGCAACAGTTTCAGACGACTAAAGCCAAAACTAAAAAGGTAGGGTTCTTCACAGGGAGG 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGGCAACAGTTTCAGACGACTAAAGCCAAAACTAAAAAGGTAGGGTTCTTCACAGGGAGG 779
Query 883 AAGAAAGAGAGTATATTTAAATCACCTGAGGATCCATTTGGAAAAGTGGGTGTGACTGGA 942
||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||
Sbjct 780 AAGAAAGAGAGTATATTCAAATCACCAGAAGATCCATTTGGTAAAGTGGGTGTGACTGGA 839
Query 943 AGTGGGAAAGGTTTGACAGATTTCCAAAAGCGAGAGAAGCATCTTCATCTCAAGTCTGGT 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGTGGGAAAGGTTTGACAGATTTCCAAAAGCGAGAGAAGCATCTTCATCTCAAGTCTGGT 899
Query 1003 AATGCTGAGGGCACTGATGAATGAACGAGAGATTTTTATGCTTTT 1047
|||| |||||||||||||||||||| |||||||||| ||| ||||
Sbjct 900 AATGGTGAGGGCACTGATGAATGAAGGAGAGATTTT-ATGTTTTT 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5