BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02570.1 Length=1302 Score E Sequences producing significant alignments: (Bits) Value Ahg936001 jgi|Araly1|936001|scaffold_500192.1 1465 0.0 > Ahg936001 jgi|Araly1|936001|scaffold_500192.1 Length=943 Score = 1465 bits (793), Expect = 0.0 Identities = 895/945 (95%), Gaps = 3/945 (0%) Strand=Plus/Plus Query 104 GTTTTGAGTTTGG-GTAAAAAATGGTAGGAGGAGTAGAAGAATTGAGTATTGAACAGTTA 162 ||||||||||||| | |||| |||| ||||||||| ||||||||||| || || |||| Sbjct 1 GTTTTGAGTTTGGAG-AAAAGATGGAAGGAGGAGTTGAAGAATTGAGCATCCAAGTGTTA 59 Query 163 GCTTCGAGTATCTCTACCTACAAAGAACAACTCGAACAGGTTAGGCAGCTTTTGTCAGAG 222 ||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 60 GCTTCGAATCTCTCTACCTACAAAGAACAGCTCGAACAGGTTAGGCAGCTTTTGTCAGAG 119 Query 223 GATCCTAGGAACTCGGAATATGCAGACATGGAAAAGGAGCTTAAAGAGGTGATTGCATTG 282 || ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GACCCTAGAAACTTGGAATATGCAGACATGGAAAAGGAGCTTAAAGAGGTGATTGCATTG 179 Query 283 ACAGAGGAAGTTCTTGCAACTGCAAAGCAAAATGAGATTTCTCTATCAGATGCCGGAGTT 342 ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 180 ACAGAAGAACTTCTTGCAACTGCAAAGCAAAATGAGATTTCTCTATCGGATGCTGGAGTT 239 Query 343 AGTGCTGAAGCAACTCCTGGCTCACCCGATTTAGAGGGTGCTTGGGAAAAGACGGGTTTA 402 ||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||| | Sbjct 240 AGTGCTGAAGCAACTACTGGCTCACCCGATTTAGAGAGTGCTTGGGAAAACATGGGTTCA 299 Query 403 AGGAATGACCCAATCCATGAGGGTAAGTTCCCTGTTGGAACTAAAGTTCAAGCTGTCTTT 462 |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 300 AGGAATAACCCAATCCATGAGGGTAAGTTCCCTGTTGGAACAAAAGTTCAAGCTGTCTTT 359 Query 463 AGTGACGATGGCGAGTGGTATGATGCGACCATTGAGGCACATACTGCAAATGGCTATTTT 522 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 360 AGTGACGATGGCGAGTGGTATGATGCGACCATTGAGGCACATACTGCGAATGGCTATTTT 419 Query 523 GTTGCTTATGATGAGTGGGGAAACAAGGAAGAGGTGGATCCAGATAATGTGAGGCCAATC 582 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 420 GTTGCTTATGATGAGTGGGGAAACAAGGAAGAGGTTGATCCAGAAAATGTGAGGCCAATC 479 Query 583 GAGCAAAATGCTATTGTCGAAGCTGAGAGATTAGCTCAAGCTACCAAAAATGCTCTCAAA 642 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GAGCAAAATGCTATCGTGGAAGCTGAGAGATTAGCTCAAGCTACCAAAAATGCTCTCAAA 539 Query 643 AGAAAGATTGAGAAAGCTGCGAGTTCTGATTATCAGACAAAAACTCTACCAGCAAAGCTC 702 |||||||||||| |||||||||||||||| || ||||| |||||||||||||||||||| Sbjct 540 AGAAAGATTGAGCAAGCTGCGAGTTCTGACTACCAGACTAAAACTCTACCAGCAAAGCTT 599 Query 703 AAAATCGATCCTAATGATCCCGAGGATGTAAAAATAGCTAAGCGTAAGAAGATACATGCT 762 |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| Sbjct 600 AAAATCGATCCTAATGATCCTGAGGATGTAAAAATAGCAAAGCGTAAGAAGATTCATGCT 659 Query 763 TTCAAATCCAAGGCAAGGTTTGAGCAACTCGAGGTTGTGCAGAACAAGAAACAGAATGAT 822 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 660 TTCAAGTCCAAGGCAAGGTTTGAGCAACTCGAGGTTGTACAGAACAAGAAACAGAATGAT 719 Query 823 TGGCAACAGTTTCAGACGACTAAAGCCAAAACTAAAAAGGTAGGGTTCTTCACAGGGAGG 882 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TGGCAACAGTTTCAGACGACTAAAGCCAAAACTAAAAAGGTAGGGTTCTTCACAGGGAGG 779 Query 883 AAGAAAGAGAGTATATTTAAATCACCTGAGGATCCATTTGGAAAAGTGGGTGTGACTGGA 942 ||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||| Sbjct 780 AAGAAAGAGAGTATATTCAAATCACCAGAAGATCCATTTGGTAAAGTGGGTGTGACTGGA 839 Query 943 AGTGGGAAAGGTTTGACAGATTTCCAAAAGCGAGAGAAGCATCTTCATCTCAAGTCTGGT 1002 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 AGTGGGAAAGGTTTGACAGATTTCCAAAAGCGAGAGAAGCATCTTCATCTCAAGTCTGGT 899 Query 1003 AATGCTGAGGGCACTGATGAATGAACGAGAGATTTTTATGCTTTT 1047 |||| |||||||||||||||||||| |||||||||| ||| |||| Sbjct 900 AATGGTGAGGGCACTGATGAATGAAGGAGAGATTTT-ATGTTTTT 943 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48682965009 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5