BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02590.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936002 jgi|Araly1|936002|scaffold_500193.1 1530 0.0
Ahg932218 jgi|Araly1|932218|scaffold_400206.1 200 2e-50
> Ahg936002 jgi|Araly1|936002|scaffold_500193.1
Length=1015
Score = 1530 bits (828), Expect = 0.0
Identities = 953/1015 (94%), Gaps = 1/1015 (0%)
Strand=Plus/Plus
Query 41 TCAAAGCTGAACT-ATAAAAATGGCGATTTCTACATTACTCTCAATCTCTTCTTTCACTC 99
||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAAACCTGAATTAAAAAAAATGGCGATTTCTACATTACTCTCAATCTCTTCTTTCACTC 60
Query 100 TATCTTCTTCCTCATCAACAAAAACCCATCTCCTTACTTCAATACCTGCTTCAAGGGTTT 159
|||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||
Sbjct 61 TATCTTCTTCCTCATCAACAAAAACCCATCTCCTAACTTCAACACCCACTTCTAGGGTTT 120
Query 160 ATTCTTATCCAATTTCACCCAAATGGAAGCAAATTCGTTTCCTGCAGAGTCAAAGTTCCA 219
|||| | ||| | ||| || |||| ||||||| |||||| || ||||||||||||| ||
Sbjct 121 ATTCATCTCCGAGTTCTCCAAAATCAAAGCAAAATCGTTTACTACAGAGTCAAAGTTTCA 180
Query 220 GTCTTTTCTATCCATTACGCCGCAATTTCACCAGATTCTGTTCTTCTCCAGATGGGTTTC 279
|||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 GTCTTTTCCACCCATTACGCCGTAATTTCACCAGATTCTGTTCTTCTCCAGATGGGTTTC 240
Query 280 TCAGAAACACCAAAGACGACGAAGAAGGAAACGAAATCATTCAGCTTCCGTCTATTGGTG 339
||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 TCAGAAAAACCAAAGAAGACGAAGAAGGAAACGAAATCATCCAGCTTCCGTCTATTGGTG 300
Query 340 TAAACCCTGTGAAATTCGCGATTTGCGTTGTGTTGTGGGCTTCTTTCTCTCTGCTTTGGT 399
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 TAAACCCTGTCAAATTCGCGATTTGCGTTGTGTTGTGGGCTTCTTTCTCTTTGCTTTGGT 360
Query 400 TTGCTAGGTCTGGAGATGCCAAAGCTGCGACTGATTCTATCAAATCTTCGAGCTTTGGTC 459
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 TTGCTAGGTCTGGAGATGCTAAAGCTGCGACTGATTCAATCAAATCTTCGAGCTTTGGTC 420
Query 460 TCAGAATCGCCTCCACTCTTCGCCGTTTTGGTTGGCCAGACGAAGCTGTTGTGTTTGCTT 519
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 TCAAAATCGCCTCCACTCTTCGCCGTTTTGGTTGGCCAGACGAAGCTGTGGTGTTTGCTT 480
Query 520 TAGCTACTCTTCCGGTTATTGAACTCCGTGGTGCCATTCCTGTTGGTTATTGGATGCAAC 579
|||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |
Sbjct 481 TAGCTACTCTTCCGGTTATTGAACTCCGTGGTGCTATTCCTGCTGGTTACTGGATGCAGC 540
Query 580 TAAAACCGGTGGTTCTCACTTCCTTCTCTGTTCTTGGCAATATGGTTCCAGTTCCATTCA 639
||||||| | |||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 541 TAAAACCTATAGTTCTCACTTTCTTCTCTGTTCTTGGCAATATGGTTCCGGTTCCATTCA 600
Query 640 TCGTACTTTACCTCAAAACGTTTGCATCTTTTGTGGCGGGTAAGAGCCAAACAGCTTCTA 699
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCGTACTTTACCTCAAAAAGTTTGCATCTTTTGTGGCGGGTAAGAGCCAAACAGCTTCTA 660
Query 700 AATTACTTGATATCTTGTTTAAAAGAGCTAAAGAGAAAGCTGGACCTGTGGAAGAGTTCA 759
|| ||||||||||| | || ||||||||||||||||||||||| || ||||||||||||
Sbjct 661 AACTACTTGATATCCTATTCAAAAGAGCTAAAGAGAAAGCTGGGCCAGTGGAAGAGTTCC 720
Query 760 AATGGTTAGGGCTAATGCTCTTTGTAGCTGTTCCATTCCCTGGAACCGGTGCTTGGACAG 819
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 721 AATGGTTAGGGCTAATGCTCTTTGTAGCTGTTCCGTTCCCTGGAACCGGTGCTTGGACAG 780
Query 820 GAGCTATAATAGCATCAATCCTCGACATGCCGTTTTGGTCTGCTGTTTCGTCTAATTTCT 879
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 GAGCTATAATAGCATCGATCCTCGACATGCCGTTTTGGCCTGCTGTTTCGTCTAATTTCT 840
Query 880 GCGGTGTAGTGTTGGCTGGACTGTTGGTGAACTTGCTGGTAAATCTTGGTTTGAAACAAG 939
||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||
Sbjct 841 GCGGTGTAGTGTTGGCTGGACTGCTGGTGAATTTGCTGGTGAATCTAGGTTTGAAACAAG 900
Query 940 CCATTGTAGCTGGTATTGCTCTCTTCTTTGTATCTACGTTTATGTGGAGCGTTCTCAGAA 999
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 901 CCATTGTTGCTGGTATAGCTCTCTTCTTTGTATCTACATTTATGTGGAGCGTTCTCAGAA 960
Query 1000 ACATTAGGAAGTCTATAAAACCATCGTTGCCTTGAATTCGTTATTAGATACTTAG 1054
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 961 ACATTAGGAAGTCTATAAAACCATCGTTGCCTTGAATTGGTTATTAGATATTTAG 1015
> Ahg932218 jgi|Araly1|932218|scaffold_400206.1
Length=321
Score = 200 bits (108), Expect = 2e-50
Identities = 135/148 (91%), Gaps = 1/148 (1%)
Strand=Plus/Minus
Query 720 AAAAGAGCTAAAGAGAAAGCTGGACCTGTGGAAGAGTTCAAATGGTTAGGGCTAATGCTC 779
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 149 AAAAGTGCTAAAGAGAAAGCTGGACCTGTGGAAGAGTTCCAATGGCTAGGGCTAATGCTC 90
Query 780 TTTGTAGCTGTTCCATTCCCTGGAACCGGTGCTTGGACAGGAGCTATAATAGCATCAATC 839
|| ||||||||||||||||| |||| |||||||||||||| |||||||||||||| |||
Sbjct 89 GTTATAGCTGTTCCATTCCCTTGAACTGGTGCTTGGACAGGCGCTATAATAGCATCGATC 30
Query 840 CTCGACATGCCGTTTTGGTCTGCTGTTT 867
|||||||| |||| ||||||||||||
Sbjct 29 TTCGACATGACGTTC-GGTCTGCTGTTT 3
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5