BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G02680.1

Length=1950
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg896203 jgi|Araly1|896203|Al_scaffold_0005_169                     272    6e-72
  Ahg924827 jgi|Araly1|924827|scaffold_200388.1                       54.7    3e-06


> Ahg896203 jgi|Araly1|896203|Al_scaffold_0005_169
Length=486

 Score =  272 bits (147),  Expect = 6e-72
 Identities = 382/489 (78%), Gaps = 42/489 (9%)
 Strand=Plus/Plus

Query  1    ATGGACTTGTTCGGAGAATTTCGTAAGGTG-GAAATCGATGGGAAACCATTTCT-TGTAT  58
            ||| ||||| |||||||||||| | ||| | ||||| ||||||||||||| ||| | |||
Sbjct  1    ATGAACTTGATCGGAGAATTTCAT-AGGGGAGAAATTGATGGGAAACCATATCTCT-TAT  58

Query  59   ACCACAAAGTTATGAAACCATTACCACAAATACACACCCCAAACTCCTCCGATGAAGAAA  118
            ||||||| ||||||||||| |||||||||||| | |   |    | | ||||||||||||
Sbjct  59   ACCACAAGGTTATGAAACCCTTACCACAAATA-A-A---C---TTTC-CCGATGAAGAAA  109

Query  119  CCACCATCGAAAAACCATTATCAATCCAAAAC-GAAGAAACTTCCTCCGATGAA-GAAAC  176
            ||||||||| |||||| ||||| |||||||||  || |||| ||||||||| || | | |
Sbjct  110  CCACCATCGTAAAACCTTTATCCATCCAAAACAAAACAAAC-TCCTCCGAT-AAGGTAGC  167

Query  177  CATTGACTCCGGTGACAACCTACCTCTTCCACTTCTTTTCGCATGCCCTATTGT-ACGAC  235
            |||||| || || ||  |||| |||||||| | | |||||| |||||||    | || | 
Sbjct  168  CATTGATTCTGGCGATGACCTCCCTCTTCCGCCTGTTTTCGTATGCCCT-GCATCACAAA  226

Query  236  TCACCTCAAC-AGTGATTATTGACAATATTACA-TTACAGGATGATCA-AGGGAAG-TC-  290
             ||||||||| | || ||| ||| ||||||| | | || || |||  | | || || || 
Sbjct  227  ACACCTCAACAATTG-TTACTGAGAATATTAAACTGAC-GGGTGA--AGACGG-AGATCA  281

Query  291  AGTA----GAACACTTTTTCAATCTCAAGACATCCCCCT-TCCATGGTGACAATACGTCA  345
            | ||     || | |||||||| |||||||| | ||||| ||  ||||||||||  |  |
Sbjct  282  AATACCTCTAATA-TTTTTCAAGCTCAAGAC-TTCCCCTCTCTTTGGTGACAATTTG-AA  338

Query  346  --GTTGATCATGATCCCGTACTACCTCTGTTTTGGTGCAACAATAAAGAAGCTGATCCAG  403
              |||| || | ||  |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct  339  GGGTTG-TCGTCATGTCGTACTCCCTTTGTTTTGGTGCAACAATAAAGAAGCTGATCCAG  397

Query  404  AGAACGATTGC-GTTATTTGCAGAGCCGAAAAGGTCGGCACGGACTATTATTACTGTGTC  462
            | ||||||||| || |||| |||| || |||||||||||||  |||||||||  ||||||
Sbjct  398  AAAACGATTGCCGT-ATTTTCAGAACCCAAAAGGTCGGCACATACTATTATTTTTGTGTC  456

Query  463  GAGTGTGAT  471
            || ||||||
Sbjct  457  GATTGTGAT  465


> Ahg924827 jgi|Araly1|924827|scaffold_200388.1
Length=524

 Score = 54.7 bits (29),  Expect = 3e-06
 Identities = 31/32 (97%), Gaps = 0/32 (0%)
 Strand=Plus/Plus

Query  477  GTACCACAAAGAATGTGTCGAGTCTCCACTTA  508
            ||| ||||||||||||||||||||||||||||
Sbjct  411  GTATCACAAAGAATGTGTCGAGTCTCCACTTA  442



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 73285631380


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5