BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02710.1
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484176 jgi|Araly1|484176|fgenesh2_kg.5__168__AT2G02710.2 1818 0.0
> Ahg484176 jgi|Araly1|484176|fgenesh2_kg.5__168__AT2G02710.2
Length=1622
Score = 1818 bits (984), Expect = 0.0
Identities = 1322/1474 (90%), Gaps = 68/1474 (5%)
Strand=Plus/Plus
Query 79 CtttttttCAATGAAAACATTTTCTTGATTCCTGATTTCAAATTTCACA-ATCTGGATTT 137
||||||| | |||||||||||||||||||||| ||||||||||||| || | |||| |||
Sbjct 198 CTTTTTTCCCATGAAAACATTTTCTTGATTCCCGATTTCAAATTTC-CATACCTGGGTTT 256
Query 138 CGTGTTTCGAATTCACTTTGAAGAAAAAGTTTCTCAATTTCGCCTGAAAACCCACATGGG 197
|||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 257 GGTGTTTCGGATTCACTTTGAAGAAAAAGTTTTTCAATTTCGCCTCAAAACCCACATGGG 316
Query 198 ATTGGAACTAAACACTAGACTGACAAGAAGAAG-AAGAGTAATCA-TCATCGAGTGTTTA 255
||||| |||||||||| ||||||||| ||| || ||||||||| | ||||||||||||||
Sbjct 317 ATTGGCACTAAACACTGGACTGACAACAAG-AGCAAGAGTAAT-AGTCATCGAGTGTTTA 374
Query 256 TTACGATTATGTCCTTAACGAAATCTTCAGAATCAGTTTTCACTgaagaagaagaagaag 315
|||||||||||||| | | || | ||| | | || | ||||||||
Sbjct 375 TTACGATTATGTCC-T--C--AA----C-GAA--A-TCTT--C---------AGAAGAAG 410
Query 316 aTTCCTTTAGCGGTCGATACACGT-TATGGATCAAAGAAGCATTAGAGGAGCTTCCACAC 374
||||||||| |||||||||||| | ||||||||| |||||| ||||| |||||||| |||
Sbjct 411 ATTCCTTTAACGGTCGATACAC-TCTATGGATCACAGAAGCTTTAGAAGAGCTTCCTCAC 469
Query 375 AATTTCACAATCACCGACCCGTTTATTTCGGGTCACCCGATTGTTTTCGCGAGCTTAGGG 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AATTTCACAATCACCGACCCGTTTATTTCGGGTCACCCGATTGTTTTCGCGAGCTTAGGG 529
Query 435 TTTTTGAAAATGACTGGCTATTCACGAGAAGAAGTGATCGGAAGAAACGGTAAAGTTTTT 494
||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 530 TTTTTGAAAATGACTGGGTATTCACGAGAAGAAGTCATCGGAAGAAACGGGAAAGTTTTT 589
Query 495 CAAGGACCTAAGACTAATCGAAGATCGATCATGGAGATTCGTGAAGCGATTCGTGAAGAG 554
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 590 CAAGGACCTAAGACTAATCGAAGATCGATCATGGAGATTCGTGAAGCTATTCGTGAAGAG 649
Query 555 AGATCAGTGCA-AGTGAGCTTGTTGAATTATCGTAAATCTGGGTCTCCGTTTTGGATGTT 613
||||| || | || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 650 AGATCTGT-TATGGTTAGCTTGTTGAATTATCGTAAATCTGGATCTCCGTTTTGGATGTT 708
Query 614 GTTTCATATGTGTCCTGTTTTTGGGAAAGATGATGGTAAAGTCACCAATTTTGTGGCGGT 673
|||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 709 GTTTCATATGAGTCCTGTTTTTGGGAGAGATGATGGTAAAGTCATCAATTTTGTGGCGGT 768
Query 674 TCAGGTCCCGATTTCGGGACGAGAACATCATCGGAAGAAGTTGAGAAATGTCGGAGATTT 733
|||||||||||||||||||| || | | |||| | | | || |||||||| |
Sbjct 769 TCAGGTCCCGATTTCGGGACAAG-A-A-CATC-G--G-A----AG----CTCGGAGATAT 813
Query 734 GTCGTCGGATAC-TTCT---CCGACATTTGGTTCTTGTCGAAGAGAGGTTTGTTTTGGTA 789
|||||||||| | |||| | ||||||||||||||||||||||||||||||||||
Sbjct 814 GTCGTCGGAT-CATTCTGAGTTGGTGTTTGGTTCTTGTCGAAGAGAGGTTTGTTTTGGTA 872
Query 790 ATTTCGTGTGTCAGGATCGAGCTTTACCAGTGGAATGTGATGATGATGAACAAGGATTAG 849
||||||| |||| | | ||||| ||||||||||||||||||||| | ||||||||||
Sbjct 873 GTTTCGTGCATCAGAAACAAGCTTCACCAGTGGAATGTGATGATGA-G--CAAGGATTAG 929
Query 850 AGGATTGGGAACAGTGTGAAGCGAGTGAGTCCGAGAAGCTGAAAGCTACGGAAGCTATTA 909
||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| ||||
Sbjct 930 AGGATTGGGAACACTGTGAAGCGAGTGAGTCTGAGAAGCTGAAAGCTGTGGAAGCAATTA 989
Query 910 ACAATGTGTTATCTATCTTAGTGCATTACAGCGAGTTGAGTGGTAGATTAGTCTGCGGAA 969
|||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||
Sbjct 990 ACAATGTGTTATCTATTTTAACGCGTTACAGCAAGTTGAGTGGTAGATTAGTCTGCGGAA 1049
Query 970 AGCGGTACTGCTTGCGAGGAGTAGATTGTCTAAGCTCGTCGTTAGTTATTTCTCTCGGTA 1029
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1050 AGCGGTACTGCTTGCGAGGAGTAGATTGTCTAAGTTCGTCGTTGGTTATTTCTCTCGGTA 1109
Query 1030 GAATCAAACAAAGTTTCGTATTAACCAATCCATGCTTACCAGACATGCCTATCATTTATG 1089
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1110 GAATCAAACAAAGTTTCGTATTAACCAATCCATGCTTACCCGACATGCCTATCGTTTATG 1169
Query 1090 CGAGTGATGCCTTTTTGACACTGACCGGTTACAAGAGACAGGAAGTGTTGGGACAAAACT 1149
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1170 CGAGTGATTCCTTTTTGACACTGACCGGTTACAAGAGACAGGAAGTGTTGGGTCAAAACT 1229
Query 1150 GTAGATTTCTGAGTGGGGTTGATACTGATTCCTCAGTACTATACGAGATGAAGGAATGCA 1209
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1230 GCAGATTTCTGAGTGGGGTTGATACCGATTCCTCAGTACTATACGAGATGAAGGAGTGCA 1289
Query 1210 TCTTAAAGGGACAATCATGCACAGTGCAAATACTAAATTACAGTAACAGAAAAGATAAGA 1269
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1290 TCTTAAAGGGACAATCATGCACAGTTCAAATACTAAATTACAGTAACAGAAAAGATAAGA 1349
Query 1270 GCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGACAGCAT 1329
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 GCTCATTCTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGACAGCAT 1409
Query 1330 ATTTTGTGGGTGTTCAAGTAGAAGCAAGTTGTAGAAATACTGAAATTAAAGAGCTGAGAC 1389
|||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||
Sbjct 1410 ATTTTGTGGGTGTTCAGGTGGAAGGAAGTTGTAGAAATACTGAAAGTAAAGAGCTGAGAC 1469
Query 1390 CAGAGACGAGACAACTGAGTGTTGTCGGTGCGGTTAGAGTTGCGGTTAGAAGCTCATTGA 1449
||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1470 CAGAGACAAGGCAACTGAGTGTGGTCGGTGCGGTTAGAGTTGCGGTTAGGAGCTCATTGA 1529
Query 1450 TGGTGACATGCTAATATACGCCAGAAAGAAAATG-CGTC---GACTTA---G-AGAA--G 1499
|||| |||||||||| |||||| ||||||||||| | || || | | |||| |
Sbjct 1530 TGGTAACATGCTAATGTACGCCCGAAAGAAAATGTC-TCTTAGAAAGAAAAGTAGAAAAG 1588
Query 1500 AGTCTAAAGTGAATTGGACATACATCTTTACTAT 1533
||| | | |||||||||| |||||||||||||||
Sbjct 1589 AGTATGATGTGAATTGGATATACATCTTTACTAT 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59268421220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5