BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02720.1 Length=1723 Score E Sequences producing significant alignments: (Bits) Value Ahg484177 jgi|Araly1|484177|fgenesh2_kg.5__169__AT2G02720.1 2556 0.0 Ahg471616 jgi|Araly1|471616|fgenesh2_kg.1__1570__AT1G14420.1 717 0.0 Ahg488352 jgi|Araly1|488352|fgenesh2_kg.6__1486__AT5G15110.1 150 3e-35 > Ahg484177 jgi|Araly1|484177|fgenesh2_kg.5__169__AT2G02720.1 Length=1718 Score = 2556 bits (1384), Expect = 0.0 Identities = 1617/1726 (94%), Gaps = 30/1726 (2%) Strand=Plus/Plus Query 1 AAGTTCCTTGTTATTTAAGAAAGCCATGAATCCGATTATCTATTTCTAACCCTGGGCCGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGTTCCTTGTTATTTAAGAAAGCCATGAATCCGATTATCTATTTCTAACCCTGGGCCGA 60 Query 61 CCAGAAAACTTTTTGGACGACCCAAACTTCAAGGGTTCTAATAAATTCATCACCGGAAAA 120 ||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 61 CCAGAAAAC-TTTTGGACGACCCAAATTTCAAGGGTTCTAATAAATTCTTCACCGGAAAA 119 Query 121 AGATACATATAAAATAAAAATCTCTCACCACTGCTGATTCAAATGGTGAATCTTGGGAGC 180 | ||| ||| |||||||||||||||||||| || |||||||||| |||||||||||||| Sbjct 120 A-ATATTTAT-AAATAAAAATCTCTCACCACCGCCGATTCAAATGTTGAATCTTGGGAGC 177 Query 181 TACGTTTTCGTCTTTGTCGCGTTGTCTCTCACCGTGGTGGTTCCATCGGTTCAAGCCCAC 240 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 178 TACGTTTTCGTCTTTGTCTCGTTGTCTCTCACCGTGGTAGTTCCATCGGTTCAAGCCCAC 237 Query 241 ATCGCCGAATATGATGAATACTGGACGCAGCGTCAAACCAACGCATTGCGAGAAACTTTG 300 ||||||| ||||||||| |||||||||||||||||||||| |||||||||| |||||||| Sbjct 238 ATCGCCGTATATGATGACTACTGGACGCAGCGTCAAACCATCGCATTGCGACAAACTTTG 297 Query 301 GAATCTTATGACCCGAACCCAGAGAACGTCACGGACCACTTTAACTACCATGCCGCCTTA 360 ||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||| Sbjct 298 GAATCATATGACCCGAACCCAGATAACGTCACAGACCACTTCAACTACCATGCCGCCTTA 357 Query 361 GCTATGGAGACGACAGGGATAGTAAACGAAACAAGGAGGGATCTCCGTCAGGTCGGACGC 420 || |||||||| ||||||||||| |||||||||||||||||||||||||||||| || || Sbjct 358 GCCATGGAGACTACAGGGATAGTCAACGAAACAAGGAGGGATCTCCGTCAGGTCAGAAGC 417 Query 421 GGTAAGAAAACAA-CTAGACGTGGAGGAAGGTTTGAATCCCTAAACGCGATCGATAAATG 479 |||||||||| || |||||||||| |||||||| |||||||| || |||||||||||||| Sbjct 418 GGTAAGAAAA-AACCTAGACGTGGCGGAAGGTTCGAATCCCTTAATGCGATCGATAAATG 476 Query 480 CTGGCGAGGCGACAAAAACTGGGACAAAAACAGGAAAAAACTAGCAGATTGTGTCCTCGG 539 ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || Sbjct 477 CTGGCGAGGCGACAAAAACTGGGACAAAAACCGGAAAAAACTAGCAGATTGCGTCCTTGG 536 Query 540 ATTTGGCCGGAAAACAACCGGAGGCAAAAACGGACCGATCTATGTAGTCACTGACCCATC 599 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 537 ATTTGGCCGTAAAACAACCGGAGGCAAAAACGGACCAATCTATGTAGTCACTGACCCATC 596 Query 600 CGACAACGATCTACTAAAACCAAAACCAGGG-ACTATAAGGCACGCCGTGACAAGGGACC 658 ||||||||||||||| || |||||||| ||| |||||||| |||||||||||||| |||| Sbjct 597 CGACAACGATCTACTGAACCCAAAACC-GGGAACTATAAGACACGCCGTGACAAGAGACC 655 Query 659 GACCACTCTGGATCATCTTTGCGAGAAGCATGATCATAAAACTGCAACAAGAACTGATCA 718 ||||||| |||||| | || |||||||||||||||||||||||||||||||||||||||| Sbjct 656 GACCACTGTGGATCGTATTCGCGAGAAGCATGATCATAAAACTGCAACAAGAACTGATCA 715 Query 719 TAACGAATGATAAAACAATCGACGGTCGGGGAGCGAAAATTTATATCACTGGGGGTGCAG 778 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 716 TAACGAATGATAAAACAATCGACGGTCGGGGAGCGAGAATTTATATAACTGGGGGTGCAG 775 Query 779 GTTTAACGTTGCAGTTCGTCAGGAATGTGATAATACATAATATTCATATCAAACAGATTA 838 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| Sbjct 776 GTTTAACGTTGCAGTTCGTGAGGAATGTGATAATACATAATGTTCATATCAAACTCATTA 835 Query 839 AAAGGGGAGCTGGTGGGTTGATTATAGACTCCGAGCAACATTTTGGGCTTCGGACAGTGA 898 ||| |||| ||||||| |||||| |||||||||||| |||| ||||| ||||||| ||| Sbjct 836 AAAAAGGAGTTGGTGGGGTGATTAGAGACTCCGAGCATCATTATGGGCATCGGACAATGA 895 Query 899 GTGATGGCGATGGGATTAATATTTTTGGAGCAACGAATGTTTGGATCGATCATGTCTCAA 958 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 GTGATGGTGATGGGATTAATATTTTTGGAGCAACGAATGTTTGGATCGATCATGTCTCAA 955 Query 959 TGACGGATTGTTCTGATGGGATGATTGATGCGATCATGGGATCGACTGCAATTACTATCT 1018 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 956 TGACGGATTGTTCTGATGGGATGATTGATGCGATCATGGGATCGACCGCGATTACTATCT 1015 Query 1019 CCAATTCCCATTTTACCGACCACGACGAGGTGATGCTATTTGGGGGTACAAACAAGGATG 1078 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1016 CCAATTCACATTTTACCGACCACGACGAGGTGATGCTGTTTGGGGGTACAAACAAGGATG 1075 Query 1079 TGATCGACAAGAAAATGCAGATAACAGTTGCGTTTAACCATTTTGGTAAGAGATTGAAGC 1138 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1076 TGATCGACAAGAAAATGCAGATAACGGTTGCGTTTAACCATTTTGGTAAGAGATTGAAGC 1135 Query 1139 AAAGAATGCCTAGAGTCAGATTTGGTTTGGTCCATGTTGTGAACAATGACTACACTCACT 1198 |||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1136 AAAGAATGCCAAGGGTCAGATATGGTTTGGTCCATGTTGTGAACAATGACTACACTCACT 1195 Query 1199 GGGAAATGTATGCAATTGGTGGAAACATGAACCCTACCATTATAAGTCAAGGCAATCGTT 1258 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1196 GGGAAATGTATGCAATTGGTGGAAACATGAACCCTACCATTATAAGCCAAGGCAATCGTT 1255 Query 1259 TCATTGCTCCTCCTATTGAAGATTCCAAGCAGGTTACAAAGAGAGAGTACACACCTTATC 1318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1256 TCATTGCTCCTCCTATTGAAGATTCCAAGCAGGTTACAAAGAGAGAGTACACACCTTATC 1315 Query 1319 CTGAATGGAAATCATGGAACTGGCAATCAGAGAAAGATTATTTCTTGAATGGAGCTTACT 1378 ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1316 CTGAATGGAAAACATGGAATTGGCAATCAGAGAAAGATTATTTCTTGAACGGAGCTTACT 1375 Query 1379 TTGTGCAATCAGGAAAGGCGAACGCGTGGAGCGCAACCCCAAAAAATCCAATCCCTAGAA 1438 |||||||||||||||| || || ||||||||| | ||||| ||||||||||||||||||| Sbjct 1376 TTGTGCAATCAGGAAAAGCAAATGCGTGGAGCTCTACCCCGAAAAATCCAATCCCTAGAA 1435 Query 1439 AGTTTGCAATCCGGCCACAGCCAGGAACAAAGGTCAGAAGACTTACCAAGGATGCTGGTA 1498 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1436 AGTTTGCAATCCGGCCACAGCCAGGAACAAAGGTCAGAAGACTCACCAAGGATGCTGGTA 1495 Query 1499 CGCTTGGCTGCAAACCTGGCAAGTCCTGCTGAGAAAAGCT---TGT--G--CGTGTGTGT 1551 |||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||| Sbjct 1496 CGCTTGGCTGCAAACCGGGCAAGTCCTGCTGAGAAAAGCTCCATGTTCGTGCGTGTGTGT 1555 Query 1552 TCA--TGT-GTTATGGTAACAAACaaaaaaaaaaaGACAAAAAGAATTGTA-TGTGTTGT 1607 || ||| |||||||||||||| ||||||||| ||||||||||| |||| | |||||| Sbjct 1556 TCCCGTGTTGTTATGGTAACAAAGAAAAAAAAA--GACAAAAAGAACTGTACT-TGTTGT 1612 Query 1608 GGATGGTGTTTGTAACAAATTGTGCATAATGCAGTA----T-ATTATTA---GAAAAAAT 1659 |||||||||||||||||||||||||||||||||||| | ||||||| |||||||| Sbjct 1613 GGATGGTGTTTGTAACAAATTGTGCATAATGCAGTACGGATTATTATTATTAGAAAAAAT 1672 Query 1660 ATAGGTTTCA-TTTTTTGTTGGATGCGAAAAAATTGAAGGaaaaaa 1704 |||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 1673 ATAGGTTTCAATTTTTTGTTGGATGCGAAAAAATTCAAGGAAAAAA 1718 > Ahg471616 jgi|Araly1|471616|fgenesh2_kg.1__1570__AT1G14420.1 Length=1764 Score = 717 bits (388), Expect = 0.0 Identities = 852/1073 (79%), Gaps = 44/1073 (4%) Strand=Plus/Plus Query 463 AACGCGATCGATAAATGCTGGCGAGGCGA-CAAAAACTGGGAC-AAAAACAGGAAAAAAC 520 ||| |||| || |||||||||||| |||| | ||||||| | |||||| |||| |||| Sbjct 420 AACCCGATAGACAAATGCTGGCGATGCGATC-GTAACTGGG-CGAAAAACCGGAAGAAAC 477 Query 521 TAGCAGATTGTGTCCTCGGATTTGGCCGGAAAACAACCGGAGGCAAAA-ACGGACCGATC 579 |||| |||||||| |||||||| ||||||| ||| || ||||| |||| |||||||||| Sbjct 478 TAGCGGATTGTGTGCTCGGATTCGGCCGGAGAACCACTGGAGG-AAAAGACGGACCGATA 536 Query 580 TATGTAGTCACTGACCCATCCGACAACGATC-TACTAAAACCAAAACCAGGGACTATAAG 638 || || |||| ||| | || ||| | |||| || | || || |||||||| || |||| Sbjct 537 TACGTCGTCAAGGACGCGTCTGACGATGATCTTA-TCAACCCTAAACCAGGAACGCTAAG 595 Query 639 GCACGCCGTGACAAGGGACCGACCACTCTGGATCATCTTTGCGAGAAGCATGATCATAAA 698 ||| || ||||| | || |||| || |||||||| || || ||||||||||||||||| Sbjct 596 GCATGCAGTGACTCGAAACGGACCGCTTTGGATCATATTCGCAAGAAGCATGATCATAAA 655 Query 699 ACTGCAACAAGAACTGATCATAACGAATGATAAAACAATCGACGGTCGGGGAGCGAAAAT 758 |||||||||||||||||| ||||| | || ||||||||||| || | ||||| | | Sbjct 656 ACTGCAACAAGAACTGATGATAACTAGCGACAAAACAATCGATGGAAGAGGAGCTAGGGT 715 Query 759 TTATATCACTGG-GGGTGCAGGTTTAACGTTGCAGT-TCGTCAGGAATGTGATAATACAT 816 ||| |||| ||| ||||| || ||||||||||| | | || | |||||||| ||||| Sbjct 716 TTACATCA-TGGAAGGTGCTGGATTAACGTTGCAATAT-GTAAATAATGTGATCATACAC 773 Query 817 AATATTCATATCAAACAGATT-AAAAGGGGAGCTGGTGGGTTGATTATAGACTCCGAGCA 875 |||||| || |||| || ||| |||| | ||||||||||| | |||||| ||| | Sbjct 774 AATATTTATGTCAAGCACATTGTTCCTGGGAAC-GGTGGGTTGATCAGAGACTCTGAGGA 832 Query 876 ACATTTTGGGCTTCGGACAGTGAGTGATGGCGATGGGATTAATATT-TTTGGAGCAACGA 934 || | |||||| ||||| || ||||| ||| ||| | | || ||||||||||| | Sbjct 833 TCACATAGGGCTTAGGACAAAAAGCGATGGTGAT-GGAATCAGCTTGTTTGGAGCAACCA 891 Query 935 ATGTTTGGATCGATCATGTCTCAATGAC-GGATTGTTCTGATGGGATGATTGATGCGA-T 992 || ||||||||||||||||||||||||| || ||| | ||||| ||||| ||||| | | Sbjct 892 ATATTTGGATCGATCATGTCTCAATGACAAGA-TGTGCAGATGGTATGATCGATGCTATT 950 Query 993 CATGGGATCGACTGCAATTACTATCTCCAATTCCCATTTTACCGACCACGACGAGGTGAT 1052 | || || ||||| | ||||| |||||| ||||| ||||||||| | |||||||| Sbjct 951 GA-CGGCTCCACTGCTGTAACTATTTCCAATAGTCATTTCACCGACCACCAAGAGGTGAT 1009 Query 1053 GCTATTTGGGG-GTA-CAAACAAGGATGTGATCGACAAGAAAATGCAGATAACAGTTGCG 1110 | | ||||||| | | | || | ||||| |||||||||||||||||||| |||||| Sbjct 1010 GTTGTTTGGGGCG-AGGGATGAA-CACGTGATAGACAAGAAAATGCAGATAACGGTTGCG 1067 Query 1111 TTTAACCATTTTGGTAAGAGATT-GAAGCAAAGAATGCCTAGAGT-CAGATTTGGTTTGG 1168 |||||||| || ||||||||||| ||| || ||||||||| | | ||||| ||| Sbjct 1068 TTTAACCACTTCGGTAAGAGATTGGAA-CAGAGAATGCCTCG-TTGCAGATATGGAACAA 1125 Query 1169 TCCATGTTGTGAACAATGACTACACTCACTGGGAAATGTATGCAATTGGTGGAAACATGA 1228 ||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1126 TCCATGTGGTGAACAATGACTACACACATTGGGAAATGTATGCAATTGGTGGAAACATGA 1185 Query 1229 ACCCTACCATTATAAGTCAAGGCAATCGTTTCATTGCTCCTCCTATTGAAGATTCCAAGC 1288 ||||||| ||||| ||||||||||||||||||||||||||||||| ||| | |||| | Sbjct 1186 ACCCTACAATTATTAGTCAAGGCAATCGTTTCATTGCTCCTCCTAACGAACAAGCCAAAC 1245 Query 1289 AGGTTACAAAGAGAGAGTACACACCTTATC-CTGAATGGAAATCATGGAACTGGCAATCA 1347 || |||||||||||||||||||||| || | ||||||||||||| ||||| ||||||||| Sbjct 1246 AGATTACAAAGAGAGAGTACACACCATA-CACTGAATGGAAATCTTGGAATTGGCAATCA 1304 Query 1348 GA-GAAAGATTATTTCTTGAATGGAGCTTACTTTGTGCAATCAGG-AAAGGCGAACGCGT 1405 || | | ||||| ||| | || |||||||| ||||||||||| || |||| | || |||| Sbjct 1305 GAAGGA-GATTACTTCCTCAACGGAGCTTATTTTGTGCAATCCGGGAAAG-CAAATGCGT 1362 Query 1406 GGAGCGC-AACCCCAAAAAATCCAATCCCTAGA-AAGTTTGCAATCCGGCC-ACAGCCAG 1462 ||||| | || || ||||| || |||| | | ||||||||||| || || | | || | Sbjct 1363 GGAGCTCTAAACCGAAAAAC-CCGCTCCCGA-ACAAGTTTGCAATTCGACCTAAA-CCGG 1419 Query 1463 GAACAAAGGTCAG-AAGACTTACCAAGGATGCTGGTA-CGCTTGGCTGCAAAC 1513 |||| | |||| | || |||||||| |||||| || | | ||||||||||||| Sbjct 1420 GAACGATGGTCCGGAA-ACTTACCATGGATGCAGG-AGCACTTGGCTGCAAAC 1470 > Ahg488352 jgi|Araly1|488352|fgenesh2_kg.6__1486__AT5G15110.1 Length=1617 Score = 150 bits (81), Expect = 3e-35 Identities = 322/433 (74%), Gaps = 37/433 (9%) Strand=Plus/Plus Query 982 ATTGATGCGATCATGGGATCGACT-GCAATTACTATCTCCAATTCCCATTTTAC-CGACC 1039 |||||||| || | ||||| ||| || ||||| |||||||| || || || || | ||| Sbjct 1081 ATTGATGCCATTGTTGGATCCACTGGC-ATTACAATCTCCAACTCTCACTTCACTC-ACC 1138 Query 1040 ACGACGAGGTGATGCTATTTGGGGGTAC-AAACAAGGATGTGATC-GACAAGAAAATGC- 1096 || |||| |||||| | |||| | | | ||||| | ||| | | |||||| | |||| Sbjct 1139 ACAACGATGTGATGTTGCTTGGTGCT-CAAAACACGAATG-AAGCAGACAAGCATATGCA 1196 Query 1097 AGATAACAGTTGCGTT-TAACCATTTTGGT-AAGAGA-TTGAAGCAAAGAATGCCTA-GA 1152 || | |||||||| || ||||||||||||| ||| || ||| | || |||||||| | || Sbjct 1197 AG-TCACAGTTGC-TTATAACCATTTTGGTAAAG-GACTTGTA-CAGAGAATGCCAAGGA 1252 Query 1153 GTCAGATTTGG-TTTGGTCCATGTTGTGAACAATGACTACACTCACTGGGAAATGTATGC 1211 || ||| || ||| || |||||||||||||||||||||||||||||||| | ||||| Sbjct 1253 -TCCGATGGGGATTT-GTTCATGTTGTGAACAATGACTACACTCACTGGGAGCTTTATGC 1310 Query 1212 AATTGGTGGAAA-CATGAACCCTACCATTATAAGTCAAGGCAATCGTTTCATTGCTCCTC 1270 || || || | || | || ||| ||| | || || || || || ||||| ||||||| Sbjct 1311 GATCGGAGGTAGTCAAGGTCC-TACGATTCTCAGCCATGGAAACCGATTCATAGCTCCTC 1369 Query 1271 CTATTGAAG----ATTCCA-AGCAGGTTACAAAGAGAGAGTACACACCTTATCCTGAATG 1325 | | || ||| || || |||| ||||||||||| || | | | ||| || Sbjct 1370 C-ACACAAACCTCATTACAGAG-AGGTGACAAAGAGAGATTATGCTTCGGAGGATGAGTG 1427 Query 1326 GAAATCA-TGGAACTGGCA-ATCAGAGAAAGAT-TATTTCTTGAATGGAGCTTACTTTGT 1382 |||| || ||||||||| | ||| ||||||||| |||| | |||| |||||||| ||| Sbjct 1428 GAAA-CACTGGAACTGG-AGATCTGAGAAAGATGTATT-CATGAACGGAGCTTA-TTTCA 1483 Query 1383 G-CAATCAGGAAA 1394 | ||||| ||||| Sbjct 1484 GACAATCTGGAAA 1496 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64639145765 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5