BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02720.1
Length=1723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484177 jgi|Araly1|484177|fgenesh2_kg.5__169__AT2G02720.1 2556 0.0
Ahg471616 jgi|Araly1|471616|fgenesh2_kg.1__1570__AT1G14420.1 717 0.0
Ahg488352 jgi|Araly1|488352|fgenesh2_kg.6__1486__AT5G15110.1 150 3e-35
> Ahg484177 jgi|Araly1|484177|fgenesh2_kg.5__169__AT2G02720.1
Length=1718
Score = 2556 bits (1384), Expect = 0.0
Identities = 1617/1726 (94%), Gaps = 30/1726 (2%)
Strand=Plus/Plus
Query 1 AAGTTCCTTGTTATTTAAGAAAGCCATGAATCCGATTATCTATTTCTAACCCTGGGCCGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGTTCCTTGTTATTTAAGAAAGCCATGAATCCGATTATCTATTTCTAACCCTGGGCCGA 60
Query 61 CCAGAAAACTTTTTGGACGACCCAAACTTCAAGGGTTCTAATAAATTCATCACCGGAAAA 120
||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 61 CCAGAAAAC-TTTTGGACGACCCAAATTTCAAGGGTTCTAATAAATTCTTCACCGGAAAA 119
Query 121 AGATACATATAAAATAAAAATCTCTCACCACTGCTGATTCAAATGGTGAATCTTGGGAGC 180
| ||| ||| |||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct 120 A-ATATTTAT-AAATAAAAATCTCTCACCACCGCCGATTCAAATGTTGAATCTTGGGAGC 177
Query 181 TACGTTTTCGTCTTTGTCGCGTTGTCTCTCACCGTGGTGGTTCCATCGGTTCAAGCCCAC 240
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 TACGTTTTCGTCTTTGTCTCGTTGTCTCTCACCGTGGTAGTTCCATCGGTTCAAGCCCAC 237
Query 241 ATCGCCGAATATGATGAATACTGGACGCAGCGTCAAACCAACGCATTGCGAGAAACTTTG 300
||||||| ||||||||| |||||||||||||||||||||| |||||||||| ||||||||
Sbjct 238 ATCGCCGTATATGATGACTACTGGACGCAGCGTCAAACCATCGCATTGCGACAAACTTTG 297
Query 301 GAATCTTATGACCCGAACCCAGAGAACGTCACGGACCACTTTAACTACCATGCCGCCTTA 360
||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 298 GAATCATATGACCCGAACCCAGATAACGTCACAGACCACTTCAACTACCATGCCGCCTTA 357
Query 361 GCTATGGAGACGACAGGGATAGTAAACGAAACAAGGAGGGATCTCCGTCAGGTCGGACGC 420
|| |||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 358 GCCATGGAGACTACAGGGATAGTCAACGAAACAAGGAGGGATCTCCGTCAGGTCAGAAGC 417
Query 421 GGTAAGAAAACAA-CTAGACGTGGAGGAAGGTTTGAATCCCTAAACGCGATCGATAAATG 479
|||||||||| || |||||||||| |||||||| |||||||| || ||||||||||||||
Sbjct 418 GGTAAGAAAA-AACCTAGACGTGGCGGAAGGTTCGAATCCCTTAATGCGATCGATAAATG 476
Query 480 CTGGCGAGGCGACAAAAACTGGGACAAAAACAGGAAAAAACTAGCAGATTGTGTCCTCGG 539
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 477 CTGGCGAGGCGACAAAAACTGGGACAAAAACCGGAAAAAACTAGCAGATTGCGTCCTTGG 536
Query 540 ATTTGGCCGGAAAACAACCGGAGGCAAAAACGGACCGATCTATGTAGTCACTGACCCATC 599
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 537 ATTTGGCCGTAAAACAACCGGAGGCAAAAACGGACCAATCTATGTAGTCACTGACCCATC 596
Query 600 CGACAACGATCTACTAAAACCAAAACCAGGG-ACTATAAGGCACGCCGTGACAAGGGACC 658
||||||||||||||| || |||||||| ||| |||||||| |||||||||||||| ||||
Sbjct 597 CGACAACGATCTACTGAACCCAAAACC-GGGAACTATAAGACACGCCGTGACAAGAGACC 655
Query 659 GACCACTCTGGATCATCTTTGCGAGAAGCATGATCATAAAACTGCAACAAGAACTGATCA 718
||||||| |||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GACCACTGTGGATCGTATTCGCGAGAAGCATGATCATAAAACTGCAACAAGAACTGATCA 715
Query 719 TAACGAATGATAAAACAATCGACGGTCGGGGAGCGAAAATTTATATCACTGGGGGTGCAG 778
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 716 TAACGAATGATAAAACAATCGACGGTCGGGGAGCGAGAATTTATATAACTGGGGGTGCAG 775
Query 779 GTTTAACGTTGCAGTTCGTCAGGAATGTGATAATACATAATATTCATATCAAACAGATTA 838
||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||
Sbjct 776 GTTTAACGTTGCAGTTCGTGAGGAATGTGATAATACATAATGTTCATATCAAACTCATTA 835
Query 839 AAAGGGGAGCTGGTGGGTTGATTATAGACTCCGAGCAACATTTTGGGCTTCGGACAGTGA 898
||| |||| ||||||| |||||| |||||||||||| |||| ||||| ||||||| |||
Sbjct 836 AAAAAGGAGTTGGTGGGGTGATTAGAGACTCCGAGCATCATTATGGGCATCGGACAATGA 895
Query 899 GTGATGGCGATGGGATTAATATTTTTGGAGCAACGAATGTTTGGATCGATCATGTCTCAA 958
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GTGATGGTGATGGGATTAATATTTTTGGAGCAACGAATGTTTGGATCGATCATGTCTCAA 955
Query 959 TGACGGATTGTTCTGATGGGATGATTGATGCGATCATGGGATCGACTGCAATTACTATCT 1018
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 956 TGACGGATTGTTCTGATGGGATGATTGATGCGATCATGGGATCGACCGCGATTACTATCT 1015
Query 1019 CCAATTCCCATTTTACCGACCACGACGAGGTGATGCTATTTGGGGGTACAAACAAGGATG 1078
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1016 CCAATTCACATTTTACCGACCACGACGAGGTGATGCTGTTTGGGGGTACAAACAAGGATG 1075
Query 1079 TGATCGACAAGAAAATGCAGATAACAGTTGCGTTTAACCATTTTGGTAAGAGATTGAAGC 1138
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1076 TGATCGACAAGAAAATGCAGATAACGGTTGCGTTTAACCATTTTGGTAAGAGATTGAAGC 1135
Query 1139 AAAGAATGCCTAGAGTCAGATTTGGTTTGGTCCATGTTGTGAACAATGACTACACTCACT 1198
|||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AAAGAATGCCAAGGGTCAGATATGGTTTGGTCCATGTTGTGAACAATGACTACACTCACT 1195
Query 1199 GGGAAATGTATGCAATTGGTGGAAACATGAACCCTACCATTATAAGTCAAGGCAATCGTT 1258
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1196 GGGAAATGTATGCAATTGGTGGAAACATGAACCCTACCATTATAAGCCAAGGCAATCGTT 1255
Query 1259 TCATTGCTCCTCCTATTGAAGATTCCAAGCAGGTTACAAAGAGAGAGTACACACCTTATC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TCATTGCTCCTCCTATTGAAGATTCCAAGCAGGTTACAAAGAGAGAGTACACACCTTATC 1315
Query 1319 CTGAATGGAAATCATGGAACTGGCAATCAGAGAAAGATTATTTCTTGAATGGAGCTTACT 1378
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1316 CTGAATGGAAAACATGGAATTGGCAATCAGAGAAAGATTATTTCTTGAACGGAGCTTACT 1375
Query 1379 TTGTGCAATCAGGAAAGGCGAACGCGTGGAGCGCAACCCCAAAAAATCCAATCCCTAGAA 1438
|||||||||||||||| || || ||||||||| | ||||| |||||||||||||||||||
Sbjct 1376 TTGTGCAATCAGGAAAAGCAAATGCGTGGAGCTCTACCCCGAAAAATCCAATCCCTAGAA 1435
Query 1439 AGTTTGCAATCCGGCCACAGCCAGGAACAAAGGTCAGAAGACTTACCAAGGATGCTGGTA 1498
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1436 AGTTTGCAATCCGGCCACAGCCAGGAACAAAGGTCAGAAGACTCACCAAGGATGCTGGTA 1495
Query 1499 CGCTTGGCTGCAAACCTGGCAAGTCCTGCTGAGAAAAGCT---TGT--G--CGTGTGTGT 1551
|||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||
Sbjct 1496 CGCTTGGCTGCAAACCGGGCAAGTCCTGCTGAGAAAAGCTCCATGTTCGTGCGTGTGTGT 1555
Query 1552 TCA--TGT-GTTATGGTAACAAACaaaaaaaaaaaGACAAAAAGAATTGTA-TGTGTTGT 1607
|| ||| |||||||||||||| ||||||||| ||||||||||| |||| | ||||||
Sbjct 1556 TCCCGTGTTGTTATGGTAACAAAGAAAAAAAAA--GACAAAAAGAACTGTACT-TGTTGT 1612
Query 1608 GGATGGTGTTTGTAACAAATTGTGCATAATGCAGTA----T-ATTATTA---GAAAAAAT 1659
|||||||||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 1613 GGATGGTGTTTGTAACAAATTGTGCATAATGCAGTACGGATTATTATTATTAGAAAAAAT 1672
Query 1660 ATAGGTTTCA-TTTTTTGTTGGATGCGAAAAAATTGAAGGaaaaaa 1704
|||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1673 ATAGGTTTCAATTTTTTGTTGGATGCGAAAAAATTCAAGGAAAAAA 1718
> Ahg471616 jgi|Araly1|471616|fgenesh2_kg.1__1570__AT1G14420.1
Length=1764
Score = 717 bits (388), Expect = 0.0
Identities = 852/1073 (79%), Gaps = 44/1073 (4%)
Strand=Plus/Plus
Query 463 AACGCGATCGATAAATGCTGGCGAGGCGA-CAAAAACTGGGAC-AAAAACAGGAAAAAAC 520
||| |||| || |||||||||||| |||| | ||||||| | |||||| |||| ||||
Sbjct 420 AACCCGATAGACAAATGCTGGCGATGCGATC-GTAACTGGG-CGAAAAACCGGAAGAAAC 477
Query 521 TAGCAGATTGTGTCCTCGGATTTGGCCGGAAAACAACCGGAGGCAAAA-ACGGACCGATC 579
|||| |||||||| |||||||| ||||||| ||| || ||||| |||| ||||||||||
Sbjct 478 TAGCGGATTGTGTGCTCGGATTCGGCCGGAGAACCACTGGAGG-AAAAGACGGACCGATA 536
Query 580 TATGTAGTCACTGACCCATCCGACAACGATC-TACTAAAACCAAAACCAGGGACTATAAG 638
|| || |||| ||| | || ||| | |||| || | || || |||||||| || ||||
Sbjct 537 TACGTCGTCAAGGACGCGTCTGACGATGATCTTA-TCAACCCTAAACCAGGAACGCTAAG 595
Query 639 GCACGCCGTGACAAGGGACCGACCACTCTGGATCATCTTTGCGAGAAGCATGATCATAAA 698
||| || ||||| | || |||| || |||||||| || || |||||||||||||||||
Sbjct 596 GCATGCAGTGACTCGAAACGGACCGCTTTGGATCATATTCGCAAGAAGCATGATCATAAA 655
Query 699 ACTGCAACAAGAACTGATCATAACGAATGATAAAACAATCGACGGTCGGGGAGCGAAAAT 758
|||||||||||||||||| ||||| | || ||||||||||| || | ||||| | |
Sbjct 656 ACTGCAACAAGAACTGATGATAACTAGCGACAAAACAATCGATGGAAGAGGAGCTAGGGT 715
Query 759 TTATATCACTGG-GGGTGCAGGTTTAACGTTGCAGT-TCGTCAGGAATGTGATAATACAT 816
||| |||| ||| ||||| || ||||||||||| | | || | |||||||| |||||
Sbjct 716 TTACATCA-TGGAAGGTGCTGGATTAACGTTGCAATAT-GTAAATAATGTGATCATACAC 773
Query 817 AATATTCATATCAAACAGATT-AAAAGGGGAGCTGGTGGGTTGATTATAGACTCCGAGCA 875
|||||| || |||| || ||| |||| | ||||||||||| | |||||| ||| |
Sbjct 774 AATATTTATGTCAAGCACATTGTTCCTGGGAAC-GGTGGGTTGATCAGAGACTCTGAGGA 832
Query 876 ACATTTTGGGCTTCGGACAGTGAGTGATGGCGATGGGATTAATATT-TTTGGAGCAACGA 934
|| | |||||| ||||| || ||||| ||| ||| | | || ||||||||||| |
Sbjct 833 TCACATAGGGCTTAGGACAAAAAGCGATGGTGAT-GGAATCAGCTTGTTTGGAGCAACCA 891
Query 935 ATGTTTGGATCGATCATGTCTCAATGAC-GGATTGTTCTGATGGGATGATTGATGCGA-T 992
|| ||||||||||||||||||||||||| || ||| | ||||| ||||| ||||| | |
Sbjct 892 ATATTTGGATCGATCATGTCTCAATGACAAGA-TGTGCAGATGGTATGATCGATGCTATT 950
Query 993 CATGGGATCGACTGCAATTACTATCTCCAATTCCCATTTTACCGACCACGACGAGGTGAT 1052
| || || ||||| | ||||| |||||| ||||| ||||||||| | ||||||||
Sbjct 951 GA-CGGCTCCACTGCTGTAACTATTTCCAATAGTCATTTCACCGACCACCAAGAGGTGAT 1009
Query 1053 GCTATTTGGGG-GTA-CAAACAAGGATGTGATCGACAAGAAAATGCAGATAACAGTTGCG 1110
| | ||||||| | | | || | ||||| |||||||||||||||||||| ||||||
Sbjct 1010 GTTGTTTGGGGCG-AGGGATGAA-CACGTGATAGACAAGAAAATGCAGATAACGGTTGCG 1067
Query 1111 TTTAACCATTTTGGTAAGAGATT-GAAGCAAAGAATGCCTAGAGT-CAGATTTGGTTTGG 1168
|||||||| || ||||||||||| ||| || ||||||||| | | ||||| |||
Sbjct 1068 TTTAACCACTTCGGTAAGAGATTGGAA-CAGAGAATGCCTCG-TTGCAGATATGGAACAA 1125
Query 1169 TCCATGTTGTGAACAATGACTACACTCACTGGGAAATGTATGCAATTGGTGGAAACATGA 1228
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1126 TCCATGTGGTGAACAATGACTACACACATTGGGAAATGTATGCAATTGGTGGAAACATGA 1185
Query 1229 ACCCTACCATTATAAGTCAAGGCAATCGTTTCATTGCTCCTCCTATTGAAGATTCCAAGC 1288
||||||| ||||| ||||||||||||||||||||||||||||||| ||| | |||| |
Sbjct 1186 ACCCTACAATTATTAGTCAAGGCAATCGTTTCATTGCTCCTCCTAACGAACAAGCCAAAC 1245
Query 1289 AGGTTACAAAGAGAGAGTACACACCTTATC-CTGAATGGAAATCATGGAACTGGCAATCA 1347
|| |||||||||||||||||||||| || | ||||||||||||| ||||| |||||||||
Sbjct 1246 AGATTACAAAGAGAGAGTACACACCATA-CACTGAATGGAAATCTTGGAATTGGCAATCA 1304
Query 1348 GA-GAAAGATTATTTCTTGAATGGAGCTTACTTTGTGCAATCAGG-AAAGGCGAACGCGT 1405
|| | | ||||| ||| | || |||||||| ||||||||||| || |||| | || ||||
Sbjct 1305 GAAGGA-GATTACTTCCTCAACGGAGCTTATTTTGTGCAATCCGGGAAAG-CAAATGCGT 1362
Query 1406 GGAGCGC-AACCCCAAAAAATCCAATCCCTAGA-AAGTTTGCAATCCGGCC-ACAGCCAG 1462
||||| | || || ||||| || |||| | | ||||||||||| || || | | || |
Sbjct 1363 GGAGCTCTAAACCGAAAAAC-CCGCTCCCGA-ACAAGTTTGCAATTCGACCTAAA-CCGG 1419
Query 1463 GAACAAAGGTCAG-AAGACTTACCAAGGATGCTGGTA-CGCTTGGCTGCAAAC 1513
|||| | |||| | || |||||||| |||||| || | | |||||||||||||
Sbjct 1420 GAACGATGGTCCGGAA-ACTTACCATGGATGCAGG-AGCACTTGGCTGCAAAC 1470
> Ahg488352 jgi|Araly1|488352|fgenesh2_kg.6__1486__AT5G15110.1
Length=1617
Score = 150 bits (81), Expect = 3e-35
Identities = 322/433 (74%), Gaps = 37/433 (9%)
Strand=Plus/Plus
Query 982 ATTGATGCGATCATGGGATCGACT-GCAATTACTATCTCCAATTCCCATTTTAC-CGACC 1039
|||||||| || | ||||| ||| || ||||| |||||||| || || || || | |||
Sbjct 1081 ATTGATGCCATTGTTGGATCCACTGGC-ATTACAATCTCCAACTCTCACTTCACTC-ACC 1138
Query 1040 ACGACGAGGTGATGCTATTTGGGGGTAC-AAACAAGGATGTGATC-GACAAGAAAATGC- 1096
|| |||| |||||| | |||| | | | ||||| | ||| | | |||||| | ||||
Sbjct 1139 ACAACGATGTGATGTTGCTTGGTGCT-CAAAACACGAATG-AAGCAGACAAGCATATGCA 1196
Query 1097 AGATAACAGTTGCGTT-TAACCATTTTGGT-AAGAGA-TTGAAGCAAAGAATGCCTA-GA 1152
|| | |||||||| || ||||||||||||| ||| || ||| | || |||||||| | ||
Sbjct 1197 AG-TCACAGTTGC-TTATAACCATTTTGGTAAAG-GACTTGTA-CAGAGAATGCCAAGGA 1252
Query 1153 GTCAGATTTGG-TTTGGTCCATGTTGTGAACAATGACTACACTCACTGGGAAATGTATGC 1211
|| ||| || ||| || |||||||||||||||||||||||||||||||| | |||||
Sbjct 1253 -TCCGATGGGGATTT-GTTCATGTTGTGAACAATGACTACACTCACTGGGAGCTTTATGC 1310
Query 1212 AATTGGTGGAAA-CATGAACCCTACCATTATAAGTCAAGGCAATCGTTTCATTGCTCCTC 1270
|| || || | || | || ||| ||| | || || || || || ||||| |||||||
Sbjct 1311 GATCGGAGGTAGTCAAGGTCC-TACGATTCTCAGCCATGGAAACCGATTCATAGCTCCTC 1369
Query 1271 CTATTGAAG----ATTCCA-AGCAGGTTACAAAGAGAGAGTACACACCTTATCCTGAATG 1325
| | || ||| || || |||| ||||||||||| || | | | ||| ||
Sbjct 1370 C-ACACAAACCTCATTACAGAG-AGGTGACAAAGAGAGATTATGCTTCGGAGGATGAGTG 1427
Query 1326 GAAATCA-TGGAACTGGCA-ATCAGAGAAAGAT-TATTTCTTGAATGGAGCTTACTTTGT 1382
|||| || ||||||||| | ||| ||||||||| |||| | |||| |||||||| |||
Sbjct 1428 GAAA-CACTGGAACTGG-AGATCTGAGAAAGATGTATT-CATGAACGGAGCTTA-TTTCA 1483
Query 1383 G-CAATCAGGAAA 1394
| ||||| |||||
Sbjct 1484 GACAATCTGGAAA 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64639145765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5