BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02730.1
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936010 jgi|Araly1|936010|scaffold_500201.1 1448 0.0
Ahg484177 jgi|Araly1|484177|fgenesh2_kg.5__169__AT2G02720.1 553 2e-156
Ahg347259 jgi|Araly1|347259|fgenesh1_pg.C_scaffold_5000651 115 9e-25
> Ahg936010 jgi|Araly1|936010|scaffold_500201.1
Length=872
Score = 1448 bits (784), Expect = 0.0
Identities = 843/872 (97%), Gaps = 2/872 (0%)
Strand=Plus/Plus
Query 82 CACCTGTGAGTCTGCGACCATGGCTATGCAATCTGGTATTGGGTTATCGAAGATTTTGAT 141
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2 CACCTGTGAGTCTGCGACCATGGCTATGCAATCTGGAATTGGGTTATCGAAGATTTTGAT 61
Query 142 TCTAGCTGGAGCAGGTTATACTAGTACGATTCTGGTTAAGAATGGGAAGATGGCAGATAT 201
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TTTAGCTGGAGCAGGTTATACTAGTACGATTCTGGTTAAGAATGGGAAGATGGCAGATAT 121
Query 202 TTTGGGTGAGCTTCAGGCTTTGGTTAAGCGATTTGAGAAATCTGGAGATCATGTAGATGA 261
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 122 TTTGGGTGAGCTTCAGGCTTTGGTTAAGAGATTTGAGAAATCTGGAGATCATGTAGATGA 181
Query 262 TGATTCTGATGCCATGACTACTCAGATGCAACGATTAGCAATGGAGGTTCGGCAATTGGC 321
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 182 TGATTCTGATGCTATGACTACTCAGATGCAACGGTTAGCAATGGAGGTTCGGCAATTGGC 241
Query 322 TTCGTCGCGGCAGATAACTGTTATGAATGGAGCTCAGGGAGCTGATTTTACACCGTTTAT 381
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 242 TTCGTCGCGGCAGATAACTGTTATGAATGGAGCTCAGGGAGCTGACTTTACCCCGTTTAT 301
Query 382 TGTCCCGGCAGCGACATTGGGAGCATTAGGCTATGGCTATATGTGGTTCAAGGGAATTTC 441
||||||||||| ||||||||||| |||||||||||||||||| | |||||||| |||||
Sbjct 302 AGTCCCGGCAGCCACATTGGGAGCTTTAGGCTATGGCTATATGCGATTCAAGGGGATTTC 361
Query 442 ATTCTCTGATATCATGTGTGTAACGAAGCGGAACATGGAAAATGCAGTGTCGAACTTGAC 501
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 362 ATTCTCTGATATCATGTGTGTAACTAAGCGGAACATGGAAAATGCAGTGTCGAACTTGAC 421
Query 502 CAAGCATTTGGATACCGTTTCAGAAGCTAT-TTTGAATGCTAAGAAGCACCTGAGCCAGC 560
||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 422 AAAGCATTTGGATACCGTTTCAGAAGCTATCTCT-AATGCTAAGAAGCACCTGAGCCAGC 480
Query 561 GGCTTCAGAAGGTGGACGATAAGCTAGACTTGCAGAAAGATCTCTTAAAGGGAGTCCAGG 620
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 481 GGCTTCAGAAGGTGGACGATAAGCTGGACTTGCAGAAGGATCTCTTAAAGGGAGTCCAGG 540
Query 621 ATAATGTGGGTTTGGCTCTTGAGGATCTTGCTAACATTGGAGATGATTTTGACGCAATGC 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATAATGTGGGTTTGGCTCTTGAGGATCTTGCTAACATTGGAGATGATTTTGACGCAATGC 600
Query 681 ATAGCATCTTTGGTGGTATGGGTGGGAAATTAGATAGCATTGAGTACAAGCAGAATATTG 740
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 601 ATAGCATCTTCGGTGGTATGGGTGGAAAATTAGATAGCATTGAGTACAAGCAGAATATTG 660
Query 741 CGAACATGGGTTTGATATATCTGTGCGACTCTTTGGGTGGAGAAAATCACAAGATGCCGG 800
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 CGAATATGGGTTTGATATATCTGTGTGACTCTTTGGGTGGAGAAAATCACAAGATGCCGG 720
Query 801 ATATATTGATGCAGGAGAAGCTTCGGCTTTCAGGGAAGTCAAACACATGTATAGTACTTA 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATATATTGATGCAGGAGAAGCTTCGGCTTTCAGGGAAGTCAAACACATGTATAGTACTTA 780
Query 861 CAACCGAAGAAACTTCAAGCTCAGAGGGTTTAAAAGAAAGCGATAAGATACAGCTACTAG 920
||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 CAAACGAAGAAACTTCAACCTCAGAGGGTTTAAAAGAAAGCGATAAGATAGAGCTACTAG 840
Query 921 ATGACTGCTAATTCAAATGGTGCCAATATATC 952
||||||||||||||| ||||| ||||||||||
Sbjct 841 ATGACTGCTAATTCAGATGGTACCAATATATC 872
> Ahg484177 jgi|Araly1|484177|fgenesh2_kg.5__169__AT2G02720.1
Length=1718
Score = 553 bits (299), Expect = 2e-156
Identities = 387/425 (91%), Gaps = 23/425 (5%)
Strand=Plus/Minus
Query 1119 ttttttCCTTCAATTTTTTCGCATCCAACAAAAAA-TGAAACCTATATTTTTTC---TAA 1174
|||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1718 TTTTTTCCTTGAATTTTTTCGCATCCAACAAAAAATTGAAACCTATATTTTTTCTAATAA 1659
Query 1175 TAAT-A----TACTGCATTATGCACAATTTGTTACAAACACCATCCACAACACA-TACAA 1228
|||| | |||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1658 TAATAATCCGTACTGCATTATGCACAATTTGTTACAAACACCATCCACAACA-AGTACAG 1600
Query 1229 TTCTTTTTGTCtttttttttttGTTTGTTACCATAAC-ACA--TGAACACACACG--C-- 1281
||||||||||| ||||||||| |||||||||||||| ||| ||||||||||| |
Sbjct 1599 TTCTTTTTGTC--TTTTTTTTTCTTTGTTACCATAACAACACGGGAACACACACGCACGA 1542
Query 1282 ACA---AGCTTTTCTCAGCAGGACTTGCCAGGTTTGCAGCCAAGCGTACCAGCATCCTTG 1338
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1541 ACATGGAGCTTTTCTCAGCAGGACTTGCCCGGTTTGCAGCCAAGCGTACCAGCATCCTTG 1482
Query 1339 GTAAGTCTTCTGACCTTTGTTCCTGGCTGTGGCCGGATTGCAAACTTTCTAGGGATTGGA 1398
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GTGAGTCTTCTGACCTTTGTTCCTGGCTGTGGCCGGATTGCAAACTTTCTAGGGATTGGA 1422
Query 1399 TTTTTTGGGGTTGCGCTCCACGCGTTCGCCTTTCCTGATTGCACAAAGTAAGCTCCATTC 1458
||||| ||||| | ||||||||| || || |||||||||||||||||||||||||| |||
Sbjct 1421 TTTTTCGGGGTAGAGCTCCACGCATTTGCTTTTCCTGATTGCACAAAGTAAGCTCCGTTC 1362
Query 1459 AAGAAATAATCTTTCTCTGATTGCCAGTTCCATGATTTCCATTCAGGATAAGGTGTGTAC 1518
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1361 AAGAAATAATCTTTCTCTGATTGCCAATTCCATGTTTTCCATTCAGGATAAGGTGTGTAC 1302
Query 1519 TCTCT 1523
|||||
Sbjct 1301 TCTCT 1297
> Ahg347259 jgi|Araly1|347259|fgenesh1_pg.C_scaffold_5000651
Length=3594
Score = 115 bits (62), Expect = 9e-25
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 476 ATGGAAAATGCAGTGTCGAACTTGACCAAGCATTTGGATACCGTTTCAGAAGCTATTT-T 534
||||||||||| |||| ||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 1 ATGGAAAATGCGGTGTGGAACTTGACAAAGCATTTGGATACTGTTTCAGAAGCTATTTCT 60
Query 535 GAATGCTAAGAAGCACCTGAGCCAGCGGCT 564
|||||||||||||||||| | || |||||
Sbjct 61 -AATGCTAAGAAGCACCTGTGTCACCGGCT 89
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57021096765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5