BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02740.1
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484180 jgi|Araly1|484180|fgenesh2_kg.5__172__AT2G02740.1 1393 0.0
Ahg471615 jgi|Araly1|471615|fgenesh2_kg.1__1569__AT1G14410.1 660 0.0
> Ahg484180 jgi|Araly1|484180|fgenesh2_kg.5__172__AT2G02740.1
Length=1034
Score = 1393 bits (754), Expect = 0.0
Identities = 810/837 (97%), Gaps = 4/837 (0%)
Strand=Plus/Plus
Query 19 GAAGCATTGAGAGTGAAAAGAAAAACAATGTCGCAGCTGTTATCTTCTCCTCCAATGGCG 78
||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 1 GAAGCATTGAGAGGGAAAAGAAAAACGATGACGCAGCTCTTATCTTCTCCTCCAATGGCG 60
Query 79 GTTTTCTCCAAAACCTTCATAAACCATAAGTTTTCAGATGCTCGTTTTCTCTCTTCTCAC 138
|||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 GTTTTCTCCAAACCCTTCAGAAACCATAAGTTTTCAGATGCTCGTTTTCCCTCTTCTCAC 120
Query 139 TCAATTCTCACCTCCGGTGGA-TTCGCCGGAAAAATTATTCCTTTAAAACCGACGGCGAG 197
|||||||||||||||||| || |||||||||||||| ||||| ||||||||||||| ||
Sbjct 121 TCAATTCTCACCTCCGGT-GATTTCGCCGGAAAAATCGTTCCTGTAAAACCGACGGCAAG 179
Query 198 GTTGAAATTAACGGTGAAGTCTCGACAAAG-TGATTACTTTGAGAAACAGAGGTTTGGTG 256
|||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||
Sbjct 180 GTTGAAATTAACGGTGAAGTCTCGAC-AAGATGATTACTTTGAGAAGCAGAGGTTTGGTG 238
Query 257 ACTCGTCTTCTTCGCAAAACGCTGAAGTATCTTCTCCTAGATTTTACGTGGGTCATTCGA 316
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 239 ACTCGTCTTCTTCGCAAAACGCTGAAGGATCTTCTCCAAGATTTTACGTGGGTCATTCGA 298
Query 317 TTTACAAAGGGAAAGCTGCTCTTACGATAGAACCACGAGCACCAGAGTTTGTGGCTTTGG 376
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 299 TTTACAAAGGGAAAGCTGCTCTTACGATAGAGCCACGAGCACCAGAGTTTGTGGCTTTGG 358
Query 377 AATCTGGTGCGTTCAAGCTGACAAAGGAAGGTTTTTTGTTGCTCCAATTTGCTCCTGCAG 436
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 359 AATCTGGTGCGTTCAAGCTGACAAAGGAAGGTTTTTTGTTGCTCCAGTTTGCTCCTGCAG 418
Query 437 CTGGTGTTCGTCAATATGATTGGAGTAGGAAGCAGGTCTTCTCGTTGTCGGTTACAGAAA 496
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTGGTGTTCGTCAATACGATTGGAGTAGGAAGCAGGTCTTCTCGTTGTCGGTTACAGAAA 478
Query 497 TCGGTAATCTAGTTAGCCTTGGGCCGAGGGAATCATGTGAATTCTTCCATGATCCATTCA 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCGGTAATCTAGTTAGCCTTGGGCCGAGGGAATCATGTGAATTCTTCCATGATCCATTCA 538
Query 557 AGGGAAAAGGTAGTGATGAAGGTAAAGTGAGGAAAGTGTTGAAAGTTGAGCCGCTCCCAG 616
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 AGGGAAAAGGTAGTGATGAAGGTAAAGTGAGGAAAGTGTTGAAAGTTGAGCCCCTCCCAG 598
Query 617 ATGGTTCTGGCCGCTTCTTTAACCTGAGTGTTCAAAACAAGCTCTTGAATGTAGATGAGA 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATGGTTCTGGCCGCTTCTTTAACCTGAGTGTTCAAAACAAGCTCTTGAATGTAGATGAGA 658
Query 677 GTGTATACATACCAATCACTAAAGCAGAGTTTGCTGTTCTTATCTCTGCTTTCAACTTCG 736
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GTGTATACATACCAATCACTAAAGCAGAGTTTGCTGTTCTTATCTCTGCTTTCAACTTCA 718
Query 737 TCTTGCCGCACCTTATAGGCTGGAGTGCATTTGCTAACTCCATCAAACCAGAAGACTCTA 796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 719 TCTTGCCGCACCTTATAGGCTGGAGTGCATTTGCTAACTCCATCAAACCAGAAGACGCTA 778
Query 797 ACCGCCTTAACAATGCTTCGCCTAAGTATGGAGGAGACTACGAATGGAGTAGATGAT 853
|||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 779 ACCGCCTTAACAATGCATCGCCCAAGTATGGAGGAGACTATGAATGGAGTAGATGAT 835
Score = 270 bits (146), Expect = 1e-71
Identities = 183/200 (92%), Gaps = 5/200 (3%)
Strand=Plus/Plus
Query 898 CATCTTTTTGTTGTT-GCAAATCAATGAGTCACCAAGAGCTGTTCGAGATAGAGAACGGA 956
|||||||||||| || ||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 836 CATCTTTTTGTTCTTAAAAAATCAATGAGTCACCAAGAGCTGTTCAAGACACAGAACGGA 895
Query 957 AAGAAAAGCAGCAGCAGAGACTGAAGTA--GTTTAGACCAAATG-GAATGTGTTGTTGTG 1013
|||||||| ||||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 896 AAGAAAAGTAGCAGCAGAGACTGAAGTAGCGTTTAGACCAAATGTG-ATGTGTTGTTGTG 954
Query 1014 TAGGAAATAACTTATATTTTGTGTTAGACAATCTGTATTCATTCAAAAGCAATCAATTAC 1073
|||||||||||| ||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct 955 TAGGAAATAACTCATATTTTGTATTAGACAATCTGTATTCATTCATGAGAAATCAATTAC 1014
Query 1074 AATTTTGCTAATACAAGAAT 1093
||||||||||||||||||||
Sbjct 1015 AATTTTGCTAATACAAGAAT 1034
> Ahg471615 jgi|Araly1|471615|fgenesh2_kg.1__1569__AT1G14410.1
Length=1062
Score = 660 bits (357), Expect = 0.0
Identities = 564/662 (85%), Gaps = 21/662 (3%)
Strand=Plus/Plus
Query 205 TTAACGGTGAAGTCTCGACA-AAGTGATTACTTTGAGAAACAGAGGTTTGGTGA-----C 258
||| |||| ||||| || || | | |||||||| ||||| ||||| || ||||| |
Sbjct 194 TTATCGGTTAAGTCCCGCCAGACG-GATTACTTCGAGAAGCAGAGATTCGGTGACTCTTC 252
Query 259 -TCGTCTTCTTCGCAAAACGCTGAAGTATCT-TCTCCTAGATTTTACGTGGGTCATTCGA 316
|| |||||||| ||||| ||||||| || | || ||||||||||||||||||||||||
Sbjct 253 TTCTTCTTCTTCTCAAAATGCTGAAGGAT-TGCCTGCTAGATTTTACGTGGGTCATTCGA 311
Query 317 TTTACAAAGGGAAAGCTGCTCTTACGA-TAGAACCACGAGCACCAGAGTTTGTGGCTTTG 375
| ||||||||||||||||| || || | | || ||| ||||||||||||| ||||||||
Sbjct 312 TATACAAAGGGAAAGCTGCGCTAAC-AGTGGAGCCAAGAGCACCAGAGTTCGTGGCTTTA 370
Query 376 GAATCTGGTGCGTTCAAGCTGAC-AAAGGAAGGTTTTTTGTTGCTCCAATTTGCTCCTGC 434
|| ||||| || |||||| || | ||| || ||||| | |||||||| ||||||||| |
Sbjct 371 GACTCTGGAGCTTTCAAGTTGTCGAAA-GATGGTTTCGTATTGCTCCAGTTTGCTCCTTC 429
Query 435 AGCTGGTGTTCGTCAATATGATTGGAGTAGGAAGCAGGTCTTCTCGTTGTCGGTTACAGA 494
|||||||| || |||||||||||||| | ||| ||||| ||||| ||||| ||||||||
Sbjct 430 TGCTGGTGTACGACAATATGATTGGAGCAAGAAACAGGTGTTCTCATTGTCTGTTACAGA 489
Query 495 AATCGGTAA-TCTAGTTAGCCTTGGGCCGAGGGAATCATGTGAATTCTTCCATGATCCAT 553
|||||| || |||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 490 AATCGG-AACTCTAGTTAGCCTAGGCCCGAGGGAATCTTGTGAATTCTTCCATGATCCAT 548
Query 554 TCAAGGGAAAAGGTAGTGATGAAGGTAAAGTGAGGAAAGTGTTGAAAGTTGAGCCGCTCC 613
||||||| ||| |||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 549 TCAAGGGGAAA---AGTGATGAGGGAAAAGTGAGGAAAGTGTTGAAAGTTGAGCCTCTCC 605
Query 614 CAGATGGTTCTGGCCGCTTCTTTAACCTGAGTGTTCAAAACAAGCTCT-TGAATGTAGAT 672
||||||||||||| | |||||| ||||| ||||||||||||||||| | ||||||| |||
Sbjct 606 CAGATGGTTCTGGTCACTTCTTCAACCTAAGTGTTCAAAACAAGCT-TGTGAATGTGGAT 664
Query 673 GAGAGTGTATACATACCAATCACTAAAGCAGAGTTTGCTGTTCTTATCTCTGCTTTCAAC 732
||||| | ||||||||||| ||| ||||||||||||||||||||||||||| |||||
Sbjct 665 GAGAGCATTTACATACCAATTACTCGAGCAGAGTTTGCTGTTCTTATCTCTGCCTTCAAT 724
Query 733 TTCGTCTTGCCGCACCTTATAGGCTGGAGTGCATTTGCTAACTCCATCAAACCAGAAGAC 792
|| |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 725 TTTGTCTTGCCTTACCTTATAGGCTGGAATGCATTTGCAAACTCCATCAAACCAGAAGAC 784
Query 793 TCTAACCGCCTTAACAATGCTTCGCCTAAGTATGGAGGAGACTACGAATGGAGTAGATGA 852
| ||||| | ||||| ||||||||||| |||||||||||||| ||||||| |||||||
Sbjct 785 ACAAACCGTGTGAACAACGCTTCGCCTAACTATGGAGGAGACTATGAATGGAATAGATGA 844
Query 853 TG 854
||
Sbjct 845 TG 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40753398273
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5