BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02750.1
Length=2390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936012 jgi|Araly1|936012|scaffold_500203.1 3035 0.0
Ahg484180 jgi|Araly1|484180|fgenesh2_kg.5__172__AT2G02740.1 128 2e-28
> Ahg936012 jgi|Araly1|936012|scaffold_500203.1
Length=1879
Score = 3035 bits (1643), Expect = 0.0
Identities = 1794/1868 (96%), Gaps = 6/1868 (0%)
Strand=Plus/Plus
Query 54 TCTAGATGATAAACCTAACGAGACAGAGATACCGAGTCTCGAATCTCGTGACCGGTGGAA 113
|||||||||||||||| | ||| ||| ||||||||| ||||||||| |||||||||
Sbjct 16 TCTAGATGATAAACCT--C---ACA-AGACACCGAGTCTTGAATCTCGTCACCGGTGGAT 69
Query 114 CTTCGCTGGATGTGATTTTGTCTCACTCTCCTAACAAGTTCACATTCCCGCCTCTTCTTA 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 CTTCGCTGGATGTGATTTTGTCTCACTCTCCTAACAAGTTCACATTCCCGCCTCTTCTTA 129
Query 174 AATCATGCGCGAAGCTTGGAGATGTTGTACAAGGTCGGATTCTGCATGCCCAAGTCGTCA 233
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 130 AATCATGCGCGAAGCTTGGAGATGTTGTGCAAGGTCGGATTCTGCATGCCCATGTCGTCA 189
Query 234 AAACTGGGTTTTTCGTTGATGTGTTCACGGCAACGGCTTTGGTGAGTATGTATATGAAGG 293
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 190 AAACTGGTTTTTTTGTTGATGTGTTCACGGCGACGGCTTTGGTGAGTATGTATATGAAGG 249
Query 294 TGAAGCAGGTGACGGATGCTCTTAAGGTGCTCGATGAAATGCCTGAGAGGGGTATTGCGA 353
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 250 TGAAGCAGGTGACGGATGCTCTTAAGGTGCTCGATGAAATGCCTGAGAGAGGTATTGCGA 309
Query 354 GTGTTAATGCAGCGGTTTCTGGGCTTTTGGAGAATGGGTTTTGTAGAGATGCGTTTAGGA 413
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GTGTTAATGCAGCGGTTTCGGGGCTTTTGGAGAATGGGTTTTGTAGAGATGCGTTTAGGA 369
Query 414 TGTTTGGGGATGCTAGGGTTTCTGGGTCTGGGATGAATTCGGTTACCGTTGCTAGTGTTT 473
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 370 TGTTTGGGGATGCTAGGGTTTCTGGGTCTGGGATGAATTCGGTTACCGTGGCTAGTGTTT 429
Query 474 TGGGTGGTTGTGGGGATATTGAAGGAGGGATGCAATTGCATTGTTTGGCGATGAAATCAG 533
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 430 TGGGTGGTTGTGGGGATATTGAAGGAGGGATGCAAATGCATTGTTTGGCGATGAAATCAG 489
Query 534 GTTTTGAGATGGAAGTTTACGTTGGAACCTCTCTTGTTTCAATGTATTCGAGATGTGGAG 593
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 490 GTTTTGAGATGGAAGTTTACGTTGGAACTTCTCTTGTTTCAATGTATTCGAGATGTGGAG 549
Query 594 AGTGGGTTTTGGCTGCGAGAATGTTCGAAAAGGTTCCTCATAAGAGTGTTGTTACCTACA 653
||||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 550 AGTGGATTTTGGCTGCGAGAATGTTCGAAAAAGTGCCTCATAAGAGTGTTGTGACCTACA 609
Query 654 ATGCTTTTATCTCTGGATTGATGGAGAATGGAGTTATGAATTTGGTTCCTAGTGTTTTCA 713
||||||||||||| |||||||||||||||||||||||| ||||||| |||| ||| ||||
Sbjct 610 ATGCTTTTATCTCCGGATTGATGGAGAATGGAGTTATGCATTTGGTCCCTAATGTCTTCA 669
Query 714 ATCTCATGAGGAAGTTTTCAAGTGAAGAACCAAATGATGTTACTTTTGTTAATGCAATAA 773
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 670 ATCTCATGAGGAAGTTTTCAAGTGAAGAGCCAAATGATGTTACTTTTGTTAATGCAATAA 729
Query 774 CTGCTTGCGCTAGTCTTTTGAATCTCCAGTATGGTAGGCAACTTCATGGTCTTGTCATGA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 CTGCTTGCGCTAGTCTTTTGAATCTCCAGTATGGTAGGCAACTTCATGGTCTTGTCATGA 789
Query 834 AAAAAGAGTTTCAGTTTGAGACAATGGTTGGTACTGCTCTCATTGATATGTATTCGAAAT 893
||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 790 AAACAGAGTTTCAGTTTGATACAATGGTTGGTACAGCTCTCATTGATATGTATTCAAAAT 849
Query 894 GTCGGTGTTGGAAATCAGCTTACATTGTTTTCACCGAGCTGAAAGATACCAGGAACTTGA 953
|||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 850 GTCGATGTTGGAAATCAGCATACAGTGTTTTCACCGAGCTGAAAGATACCAGGAACTTGA 909
Query 954 TATCTTGGAACTCTGTTATCTCTGGAATGATGATTAATGGACAGCATGAGACAGCAGTTG 1013
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 910 TATCTTGGAACTCTGTTATCTCTGGGATGATGCTTAATGGACAGCATGAGACAGCAGTTG 969
Query 1014 AGTTGTTTGAAAAGTTGGATTCCGAGGGACTTAAGCCTGATTCAGCGACGTGGAATTCAC 1073
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 970 AGCTGTTTGAACAGTTGGATTCCGAGGGACTTAAGCCTGATTCAGCGACGTGGAATTCGC 1029
Query 1074 TGATCAGTGGCTTTTCACAATTAGGGAAAGTAATTGAAGCTTTCAAGTTCTTTGAGAGAA 1133
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1030 TGATCAGTGGCTTTTCACAATTAGGGAAAGTAGTTGAAGCTTTCAAGTTCTTTGAGAGAA 1089
Query 1134 TGCTATCAGTAGTTATGGTTCCTAGTTTGAAATGTCTCACTAGCCTTTTATCTGCTTGTT 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1090 TGCTATCAGTAGTTATGGTTCCTAGTTTGAAATGTCTCACTAGCCTTTTATCGGCTTGTT 1149
Query 1194 CAGATATTTGGACTTTGAAGAACGGCAAAGAGATCCATGGGCATGTCATTAAAGCTGCAG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 CAGATATTTGGACTTTGAAGAACGGCAAAGAGATCCATGGGCATGTCATTAAAGCTGCAG 1209
Query 1254 CGGAAAGGGATATATTTGTTTTAACGTCTCTCATTGACATGTACATGAAATGTGGGCTCT 1313
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1210 CTGAAAGGGATATATTTGTTTTAACGTCTCTCATTGACATGTACATGAAATGTGGGTTCT 1269
Query 1314 CCTCGTGGGCACGCCGGATCTTTGATCGATTTGAACCGAAACCCAAGGATCCCGTGTTCT 1373
| | || |||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1270 CGTTGTTGGCACGCCGGATATTTGATCGGTTTGAGCCGAAACCCAAGGATCCCGTGTTCT 1329
Query 1374 GGAACGTTATGATATCTGGATATGGTAAACATGGAGAGTGTGAGTCTGCAATTGAAATAT 1433
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1330 GGAACGTTATGATATCTGGATATGGTAAACATGGAGAGTGTGAATCTGCAATTGAAATCT 1389
Query 1434 TCGAACTATTACGAGAGGAGAAAGTAGAACCGAGTTTAGCAACCTTTACTGCTGTTCTAT 1493
|||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1390 TCGACCTATTACGAGAGGAGGAAGTAGAACCGAGTTTAGCAACCTTCACTGCTGTTCTAT 1449
Query 1494 CTGCGTGTAGTCACTGTGGCAATGTCGAGAAGGGTTCTCAAATATTTAGGTTGATGCAGG 1553
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1450 CTGCGTGTAGTCACTGCGGCAATGTCGAGAAGGGATCTCAAATATTTAGGTTGATGCAGG 1509
Query 1554 AAGAATATGGATATAAACCTAGTACAGAGCACATAGGTTGTATGATTGATCTTTTGGGTC 1613
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1510 AAGAATATGGATATAAACCTAGTACAGAGCACATTGGTTGTATGGTTGATCTTTTGGGTC 1569
Query 1614 GGTCTGGGAGATTAAGAGAGGCCAAGGAGGTAATAGATCAAATGTCAGAACCATCGTCTT 1673
||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1570 GGTTTGGCAGATTAAGAGAAGCCAAGGAGGTAATAGATCAAATGTCAGATCCATCATCTT 1629
Query 1674 CGGTTTACTCTTCCTTGCTCGGTTCATGTAGGCAACACCTAGATCCAGTTCTTGGAGAGG 1733
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1630 CGGTTTACTCTTCTTTGCTCGGTTCATGTAGGCAACACCTGGATCCAGTGCTTGGAGAGG 1689
Query 1734 AAGCGGCAATGAAGCTAGCAGAGTTAGAGCCAGAGAATCCAGCTCCATTTGTGATCTTGT 1793
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1690 AAGCGGCAATGAAGCTAGCAGAGTTAGAGCCAGGGAATCCAGCTCCATTTGTGATCTTGT 1749
Query 1794 CCAGTATATATGCTGCATTAGAAAGATGGGAAGATGTGGAAAGTATCAGGCAGGTAATAG 1853
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 CCAGCATATATGCTGCATTAGAAAGATGGGAAGATGTGGAAAGTATCAGGCAGGTAATAG 1809
Query 1854 ATCAGAAGCAACTGGTGAAACTTCCAGGTCTTAGTTTGTCTGGTTAAGTATATGCCGACT 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1810 ATCAGAAGCAACTGGTGAAACTTCCAGGTCTTAGTTTGTCTGGTTAAGTATATGCTGAGT 1869
Query 1914 GGTCGAAT 1921
|||| |||
Sbjct 1870 GGTCCAAT 1877
> Ahg484180 jgi|Araly1|484180|fgenesh2_kg.5__172__AT2G02740.1
Length=1034
Score = 128 bits (69), Expect = 2e-28
Identities = 79/84 (94%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 2307 ATTCTTGTATTAGCAAAATTGTAATTGATTGCTTTTGAATGAATACAGATTGTCTAACAC 2366
|||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct 1034 ATTCTTGTATTAGCAAAATTGTAATTGATTTCTCATGAATGAATACAGATTGTCTAATAC 975
Query 2367 AAAATATAAGTTATTTCCTACACA 2390
||||||| ||||||||||||||||
Sbjct 974 AAAATATGAGTTATTTCCTACACA 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90045339180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5