BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02750.1 Length=2390 Score E Sequences producing significant alignments: (Bits) Value Ahg936012 jgi|Araly1|936012|scaffold_500203.1 3035 0.0 Ahg484180 jgi|Araly1|484180|fgenesh2_kg.5__172__AT2G02740.1 128 2e-28 > Ahg936012 jgi|Araly1|936012|scaffold_500203.1 Length=1879 Score = 3035 bits (1643), Expect = 0.0 Identities = 1794/1868 (96%), Gaps = 6/1868 (0%) Strand=Plus/Plus Query 54 TCTAGATGATAAACCTAACGAGACAGAGATACCGAGTCTCGAATCTCGTGACCGGTGGAA 113 |||||||||||||||| | ||| ||| ||||||||| ||||||||| ||||||||| Sbjct 16 TCTAGATGATAAACCT--C---ACA-AGACACCGAGTCTTGAATCTCGTCACCGGTGGAT 69 Query 114 CTTCGCTGGATGTGATTTTGTCTCACTCTCCTAACAAGTTCACATTCCCGCCTCTTCTTA 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 70 CTTCGCTGGATGTGATTTTGTCTCACTCTCCTAACAAGTTCACATTCCCGCCTCTTCTTA 129 Query 174 AATCATGCGCGAAGCTTGGAGATGTTGTACAAGGTCGGATTCTGCATGCCCAAGTCGTCA 233 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 130 AATCATGCGCGAAGCTTGGAGATGTTGTGCAAGGTCGGATTCTGCATGCCCATGTCGTCA 189 Query 234 AAACTGGGTTTTTCGTTGATGTGTTCACGGCAACGGCTTTGGTGAGTATGTATATGAAGG 293 ||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 190 AAACTGGTTTTTTTGTTGATGTGTTCACGGCGACGGCTTTGGTGAGTATGTATATGAAGG 249 Query 294 TGAAGCAGGTGACGGATGCTCTTAAGGTGCTCGATGAAATGCCTGAGAGGGGTATTGCGA 353 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 250 TGAAGCAGGTGACGGATGCTCTTAAGGTGCTCGATGAAATGCCTGAGAGAGGTATTGCGA 309 Query 354 GTGTTAATGCAGCGGTTTCTGGGCTTTTGGAGAATGGGTTTTGTAGAGATGCGTTTAGGA 413 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 310 GTGTTAATGCAGCGGTTTCGGGGCTTTTGGAGAATGGGTTTTGTAGAGATGCGTTTAGGA 369 Query 414 TGTTTGGGGATGCTAGGGTTTCTGGGTCTGGGATGAATTCGGTTACCGTTGCTAGTGTTT 473 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 370 TGTTTGGGGATGCTAGGGTTTCTGGGTCTGGGATGAATTCGGTTACCGTGGCTAGTGTTT 429 Query 474 TGGGTGGTTGTGGGGATATTGAAGGAGGGATGCAATTGCATTGTTTGGCGATGAAATCAG 533 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 430 TGGGTGGTTGTGGGGATATTGAAGGAGGGATGCAAATGCATTGTTTGGCGATGAAATCAG 489 Query 534 GTTTTGAGATGGAAGTTTACGTTGGAACCTCTCTTGTTTCAATGTATTCGAGATGTGGAG 593 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 490 GTTTTGAGATGGAAGTTTACGTTGGAACTTCTCTTGTTTCAATGTATTCGAGATGTGGAG 549 Query 594 AGTGGGTTTTGGCTGCGAGAATGTTCGAAAAGGTTCCTCATAAGAGTGTTGTTACCTACA 653 ||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct 550 AGTGGATTTTGGCTGCGAGAATGTTCGAAAAAGTGCCTCATAAGAGTGTTGTGACCTACA 609 Query 654 ATGCTTTTATCTCTGGATTGATGGAGAATGGAGTTATGAATTTGGTTCCTAGTGTTTTCA 713 ||||||||||||| |||||||||||||||||||||||| ||||||| |||| ||| |||| Sbjct 610 ATGCTTTTATCTCCGGATTGATGGAGAATGGAGTTATGCATTTGGTCCCTAATGTCTTCA 669 Query 714 ATCTCATGAGGAAGTTTTCAAGTGAAGAACCAAATGATGTTACTTTTGTTAATGCAATAA 773 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 670 ATCTCATGAGGAAGTTTTCAAGTGAAGAGCCAAATGATGTTACTTTTGTTAATGCAATAA 729 Query 774 CTGCTTGCGCTAGTCTTTTGAATCTCCAGTATGGTAGGCAACTTCATGGTCTTGTCATGA 833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 730 CTGCTTGCGCTAGTCTTTTGAATCTCCAGTATGGTAGGCAACTTCATGGTCTTGTCATGA 789 Query 834 AAAAAGAGTTTCAGTTTGAGACAATGGTTGGTACTGCTCTCATTGATATGTATTCGAAAT 893 ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct 790 AAACAGAGTTTCAGTTTGATACAATGGTTGGTACAGCTCTCATTGATATGTATTCAAAAT 849 Query 894 GTCGGTGTTGGAAATCAGCTTACATTGTTTTCACCGAGCTGAAAGATACCAGGAACTTGA 953 |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 850 GTCGATGTTGGAAATCAGCATACAGTGTTTTCACCGAGCTGAAAGATACCAGGAACTTGA 909 Query 954 TATCTTGGAACTCTGTTATCTCTGGAATGATGATTAATGGACAGCATGAGACAGCAGTTG 1013 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 910 TATCTTGGAACTCTGTTATCTCTGGGATGATGCTTAATGGACAGCATGAGACAGCAGTTG 969 Query 1014 AGTTGTTTGAAAAGTTGGATTCCGAGGGACTTAAGCCTGATTCAGCGACGTGGAATTCAC 1073 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 970 AGCTGTTTGAACAGTTGGATTCCGAGGGACTTAAGCCTGATTCAGCGACGTGGAATTCGC 1029 Query 1074 TGATCAGTGGCTTTTCACAATTAGGGAAAGTAATTGAAGCTTTCAAGTTCTTTGAGAGAA 1133 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1030 TGATCAGTGGCTTTTCACAATTAGGGAAAGTAGTTGAAGCTTTCAAGTTCTTTGAGAGAA 1089 Query 1134 TGCTATCAGTAGTTATGGTTCCTAGTTTGAAATGTCTCACTAGCCTTTTATCTGCTTGTT 1193 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1090 TGCTATCAGTAGTTATGGTTCCTAGTTTGAAATGTCTCACTAGCCTTTTATCGGCTTGTT 1149 Query 1194 CAGATATTTGGACTTTGAAGAACGGCAAAGAGATCCATGGGCATGTCATTAAAGCTGCAG 1253 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1150 CAGATATTTGGACTTTGAAGAACGGCAAAGAGATCCATGGGCATGTCATTAAAGCTGCAG 1209 Query 1254 CGGAAAGGGATATATTTGTTTTAACGTCTCTCATTGACATGTACATGAAATGTGGGCTCT 1313 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1210 CTGAAAGGGATATATTTGTTTTAACGTCTCTCATTGACATGTACATGAAATGTGGGTTCT 1269 Query 1314 CCTCGTGGGCACGCCGGATCTTTGATCGATTTGAACCGAAACCCAAGGATCCCGTGTTCT 1373 | | || |||||||||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 1270 CGTTGTTGGCACGCCGGATATTTGATCGGTTTGAGCCGAAACCCAAGGATCCCGTGTTCT 1329 Query 1374 GGAACGTTATGATATCTGGATATGGTAAACATGGAGAGTGTGAGTCTGCAATTGAAATAT 1433 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1330 GGAACGTTATGATATCTGGATATGGTAAACATGGAGAGTGTGAATCTGCAATTGAAATCT 1389 Query 1434 TCGAACTATTACGAGAGGAGAAAGTAGAACCGAGTTTAGCAACCTTTACTGCTGTTCTAT 1493 |||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 1390 TCGACCTATTACGAGAGGAGGAAGTAGAACCGAGTTTAGCAACCTTCACTGCTGTTCTAT 1449 Query 1494 CTGCGTGTAGTCACTGTGGCAATGTCGAGAAGGGTTCTCAAATATTTAGGTTGATGCAGG 1553 |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1450 CTGCGTGTAGTCACTGCGGCAATGTCGAGAAGGGATCTCAAATATTTAGGTTGATGCAGG 1509 Query 1554 AAGAATATGGATATAAACCTAGTACAGAGCACATAGGTTGTATGATTGATCTTTTGGGTC 1613 |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 1510 AAGAATATGGATATAAACCTAGTACAGAGCACATTGGTTGTATGGTTGATCTTTTGGGTC 1569 Query 1614 GGTCTGGGAGATTAAGAGAGGCCAAGGAGGTAATAGATCAAATGTCAGAACCATCGTCTT 1673 ||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct 1570 GGTTTGGCAGATTAAGAGAAGCCAAGGAGGTAATAGATCAAATGTCAGATCCATCATCTT 1629 Query 1674 CGGTTTACTCTTCCTTGCTCGGTTCATGTAGGCAACACCTAGATCCAGTTCTTGGAGAGG 1733 ||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 1630 CGGTTTACTCTTCTTTGCTCGGTTCATGTAGGCAACACCTGGATCCAGTGCTTGGAGAGG 1689 Query 1734 AAGCGGCAATGAAGCTAGCAGAGTTAGAGCCAGAGAATCCAGCTCCATTTGTGATCTTGT 1793 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1690 AAGCGGCAATGAAGCTAGCAGAGTTAGAGCCAGGGAATCCAGCTCCATTTGTGATCTTGT 1749 Query 1794 CCAGTATATATGCTGCATTAGAAAGATGGGAAGATGTGGAAAGTATCAGGCAGGTAATAG 1853 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1750 CCAGCATATATGCTGCATTAGAAAGATGGGAAGATGTGGAAAGTATCAGGCAGGTAATAG 1809 Query 1854 ATCAGAAGCAACTGGTGAAACTTCCAGGTCTTAGTTTGTCTGGTTAAGTATATGCCGACT 1913 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1810 ATCAGAAGCAACTGGTGAAACTTCCAGGTCTTAGTTTGTCTGGTTAAGTATATGCTGAGT 1869 Query 1914 GGTCGAAT 1921 |||| ||| Sbjct 1870 GGTCCAAT 1877 > Ahg484180 jgi|Araly1|484180|fgenesh2_kg.5__172__AT2G02740.1 Length=1034 Score = 128 bits (69), Expect = 2e-28 Identities = 79/84 (94%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 2307 ATTCTTGTATTAGCAAAATTGTAATTGATTGCTTTTGAATGAATACAGATTGTCTAACAC 2366 |||||||||||||||||||||||||||||| || |||||||||||||||||||||| || Sbjct 1034 ATTCTTGTATTAGCAAAATTGTAATTGATTTCTCATGAATGAATACAGATTGTCTAATAC 975 Query 2367 AAAATATAAGTTATTTCCTACACA 2390 ||||||| |||||||||||||||| Sbjct 974 AAAATATGAGTTATTTCCTACACA 951 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90045339180 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5