BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02760.1
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484183 jgi|Araly1|484183|fgenesh2_kg.5__175__AT2G02760.1 1066 0.0
Ahg471614 jgi|Araly1|471614|fgenesh2_kg.1__1568__AT1G14400.1 608 2e-173
Ahg315981 jgi|Araly1|315981|fgenesh1_pm.C_scaffold_2001014 235 4e-61
> Ahg484183 jgi|Araly1|484183|fgenesh2_kg.5__175__AT2G02760.1
Length=864
Score = 1066 bits (577), Expect = 0.0
Identities = 709/767 (92%), Gaps = 31/767 (4%)
Strand=Plus/Plus
Query 18 AGATATGTGTTGATTAGATCGAAGCTTCTAGAAGATCACACCACTGCGTGCGTTATACGA 77
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AGATATGTTTTGATTAGATCGAAGTTTCTAGAAGATCACACCACTGCGTGCGTTATACGA 60
Query 78 ACTTCTACATCATTTCTCTTTTCTCTCATCGCTCGGTGAATTCGAGGATCCTCGAGCTTT 137
||||| || || || | | || | || | |||||||||| |||||||||
Sbjct 61 ACTTC--CA-CA----TC--AT-T-TC-T---TC--T---TTCGAGGATCGTCGAGCTTT 100
Query 138 TTGATCGGAGAC---T-TT-T-TC-TC-TCATCGTCGTTGTTTGAATTCTCCGGCTGAGA 189
|||||||||||| | || | || || ||||| |||| |||||||||| ||||| |||
Sbjct 101 TTGATCGGAGACTTTTATTCTCTCATCATCATCATCGTCGTTTGAATTCCCCGGCCAAGA 160
Query 190 GATGCTTGCTTGACGACGAATCTCCACCGATCTTTTACCTTTTCGCACAACAAGTAAGAG 249
|||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||
Sbjct 161 GATGCTTGCTTGACGACGAACCTCCACCGATCTTTTGCCTTTTTGCACAACAAGTAAGAG 220
Query 250 AAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTCAAGAGGTTGCAGCAAGA 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 AAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTCAAGAGGTTGCAGCAAGA 280
Query 310 CCCACCTGCAGGAATTAGTGGTGCTCCACAAGACAACAATATCATGTTGTGGAATGCTGT 369
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 CCCACCTGCTGGAATTAGTGGTGCTCCACAAGACAACAATATCATGTTGTGGAATGCTGT 340
Query 370 TATATTCGGGCCTGATGATACCCCTTGGGATGGAGGTACTTTCAAATTGTCACTGCAGTT 429
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 341 TATATTCGGGCCTGATGATACCCCTTGGGATGGAGGTACTTTCAAACTCTCACTGCAGTT 400
Query 430 TTCGGAAGATTATCCAAATAAACCACCAACAGTGCGGTTTGTTTCACGGATGTTCCATCC 489
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 401 TTCGGAAGATTATCCTAATAAGCCACCAACAGTTCGGTTTGTTTCACGGATGTTCCATCC 460
Query 490 AAACATTTATGCTGATGGGAGTATATGCTTGGACATTCTCCAAAACCAATGGAGTCCAAT 549
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 461 AAATATTTATGCTGATGGGAGTATATGCTTGGACATTCTCCAGAACCAATGGAGTCCAAT 520
Query 550 ATACGATGTCGCTGCTATACTAACCTCCATTCAGTCATTGCTATGTGATCCTAATCCGAA 609
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 521 ATACGATGTCGCGGCTATACTAACCTCCATTCAGTCATTGCTCTGTGATCCTAATCCGAA 580
Query 610 TTCTCCTGCAAATTCGGAAGCTGCACGAATGTTCAGTGAAAGCAAGCGCGAGTACAACAG 669
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 581 TTCTCCTGCAAATTCGGAAGCGGCACGAATGTTCAGTGAAAGCAAGCGCGAGTACAACAG 640
Query 670 AAGAGTCCGCGAGGTTGTCGAACAAAGCTGGACTGCCGACTAGTAATTATATCAT--TGT 727
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 641 AAGAGTCCGCGAGGTTGTCGAACAAAGCTGGACTGCCGACTAGTAATTATATT-TGCTGT 699
Query 728 AGCATTTGTCTTCAAATAACATTAAACCTCCTCTCTTGTATCTGATT 774
|||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 700 AGCATTTGTCTTCAAATAACATTAAACCTCGTCTCTTGTGTTTGATT 746
Score = 167 bits (90), Expect = 1e-40
Identities = 109/118 (92%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 813 CCACTCTCTTTTATGTCTTTCTGTGT-TTTTCAAACTCTGTGATTTGTTGCTCTTCATGt 871
||||||||||| |||||||| ||||| ||||| |||||||||||||||| || || ||||
Sbjct 747 CCACTCTCTTTCATGTCTTTGTGTGTGTTTTC-AACTCTGTGATTTGTTTCTTTTGATGT 805
Query 872 tttttttCTTTGTATTTTCGTAACCACATTCATCTTCATAATTATCATATGTATTTCA 929
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TTCTTTTCTATGTATTTTCGTAACCACATTCATCTTCATAATTATCATATGTATTTCA 863
> Ahg471614 jgi|Araly1|471614|fgenesh2_kg.1__1568__AT1G14400.1
Length=927
Score = 608 bits (329), Expect = 2e-173
Identities = 419/464 (90%), Gaps = 0/464 (0%)
Strand=Plus/Plus
Query 251 AGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTCAAGAGGTTGCAGCAAGAC 310
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 205 AGGATGTCGACGCCAGCTAGGAAGAGGTTGATGAGGGATTTCAAGAGGTTGCAGCAAGAC 264
Query 311 CCACCTGCAGGAATTAGTGGTGCTCCACAAGACAACAATATCATGTTGTGGAATGCTGTT 370
|||||||| || ||||||||||||||||| ||||||||||||||| | |||||||||||
Sbjct 265 CCACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAATATCATGCTCTGGAATGCTGTC 324
Query 371 ATATTCGGGCCTGATGATACCCCTTGGGATGGAGGTACTTTCAAATTGTCACTGCAGTTT 430
||||| ||||||||||| || || ||||||||||||||||||||| | |||||||||||
Sbjct 325 ATATTTGGGCCTGATGACACACCATGGGATGGAGGTACTTTCAAACTCTCACTGCAGTTC 384
Query 431 TCGGAAGATTATCCAAATAAACCACCAACAGTGCGGTTTGTTTCACGGATGTTCCATCCA 490
|| ||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 385 TCTGAAGATTATCCTAATAAACCACCAACAGTTCGGTTTGTGTCACGGATGTTTCATCCA 444
Query 491 AACATTTATGCTGATGGGAGTATATGCTTGGACATTCTCCAAAACCAATGGAGTCCAATA 550
|| |||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 445 AATATTTATGCAGATGGGAGTATCTGCTTGGACATTCTACAAAACCAGTGGAGTCCAATA 504
Query 551 TACGATGTCGCTGCTATACTAACCTCCATTCAGTCATTGCTATGTGATCCTAATCCGAAT 610
|| ||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 505 TATGATGTTGCTGCTATACTTACCTCCATCCAGTCCTTGCTCTGTGACCCTAATCCGAAT 564
Query 611 TCTCCTGCAAATTCGGAAGCTGCACGAATGTTCAGTGAAAGCAAGCGCGAGTACAACAGA 670
||||||||||| ||||||||||| || |||| ||| ||||||||||| ||||||||||||
Sbjct 565 TCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAAGCAAGCGTGAGTACAACAGA 624
Query 671 AGAGTCCGCGAGGTTGTCGAACAAAGCTGGACTGCCGACTAGTA 714
||||| || || ||||| || |||||||||||||| ||||||||
Sbjct 625 AGAGTGCGTGATGTTGTTGAGCAAAGCTGGACTGCTGACTAGTA 668
> Ahg315981 jgi|Araly1|315981|fgenesh1_pm.C_scaffold_2001014
Length=471
Score = 235 bits (127), Expect = 4e-61
Identities = 333/431 (77%), Gaps = 19/431 (4%)
Strand=Plus/Plus
Query 254 ATGTCGACTCCAGCGAGGAAGA-GATTGATGAGGGATTTCAAGAGGTTGCAGCAAGACCC 312
||||| |||||||| ||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAACTCCAGCAAGGAAGAGGCTT-ATGAGGGATTTCAAGAGGTTGCAGCAAGACCC 59
Query 313 ACCTGCAGGAATTAGTGGTGCTCCACAAGACAACAATATCATGTTGTGGAATGCTGTTAT 372
||||| ||||| | ||||| | | ||||| ||||| ||| | | ||||| || |||||
Sbjct 60 TCCTGCTGGAATCAATGGTGATTCTCAAGATAACAACATCTTACTCTGGAACGCCGTTAT 119
Query 373 ATTCGGGCCTGATGATACCCCTTGGGATGGAGGTACT-TTCAAA-TT-GTC--A---C-- 422
|| || || |||||||| | ||||||||||||||| || ||| || || | |
Sbjct 120 CTTTGGTCCGGATGATACACTTTGGGATGGAGGTACAATT-AAAGTTTGTATTATGACCC 178
Query 423 TGCAGTTTTCGGAAGATTATCCAAATAAACCACCAACAGTGCGGTTTGTTTCACGGATGT 482
| || ||| | || ||||||||||| || ||||| || || || |||||| | |||||||
Sbjct 179 TTCAATTTACAGAGGATTATCCAAACAAGCCACCGACTGTTCGCTTTGTTACTCGGATGT 238
Query 483 TCCATCCAAACATTTATGCTGATGGGAGTATATG-CTTGGACATTCTC-CAAAACCAATG 540
| || ||||| || ||||| ||||| ||||| || |||| |||| || || || || ||
Sbjct 239 TTCACCCAAATATCTATGCAGATGGAAGTATTTGTCTTG-ACAT-CTTACAGAATCAGTG 296
Query 541 GAGTCCAATATACGATGTCGCTGCTATACTAACCTCCATTCAGTCATTGCTA-TGTGATC 599
|||||| || || ||||| || || || || || || || |||||| | || |||||||
Sbjct 297 GAGTCCTATTTATGATGTTGCAGCAATTCTTACATCTATCCAGTCACT-CTTCTGTGATC 355
Query 600 CTAATCCGAATTCTCCTGCAAATTCGGAAGCTGCACGAATGTTCAGTGAAAGCAAGCGCG 659
| | || || || |||||||| || |||||||| || | ||||| |||| |||||| |
Sbjct 356 CCAGCCCAAACTCACCTGCAAACTCAGAAGCTGCCCGCTTATTCAGCGAAAACAAGCGAG 415
Query 660 AGTACAACAGA 670
| |||||||||
Sbjct 416 AATACAACAGA 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34653731553
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5