BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02770.1
Length=2161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924087 jgi|Araly1|924087|scaffold_105368.1 691 0.0
Ahg928862 jgi|Araly1|928862|scaffold_301319.1 571 6e-162
Ahg924117 jgi|Araly1|924117|scaffold_105398.1 483 3e-135
Ahg322589 jgi|Araly1|322589|fgenesh1_pm.C_scaffold_5000133 93.5 6e-18
Ahg471612 jgi|Araly1|471612|fgenesh2_kg.1__1566__AT1G14390.1 87.9 3e-16
> Ahg924087 jgi|Araly1|924087|scaffold_105368.1
Length=1640
Score = 691 bits (374), Expect = 0.0
Identities = 597/700 (85%), Gaps = 33/700 (5%)
Strand=Plus/Plus
Query 20 AATGTGTCTTTGTAACTACTAATATGGATACTCGTCTGGGCCTTCTCAT-GGACAAGGAT 78
||||||| ||||||||||| || || ||||||||||| ||| |||| || ||||||||||
Sbjct 670 AATGTGTGTTTGTAACTACAAACATTGATACTCGTCTCGGCGTTCT-ATCGGACAAGGAT 728
Query 79 GATACTGTATCTACATTCAAAGAGAAAATCTGCAAAGAGCATGAACAGTGTTTCCCTAGT 138
|||| ||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||
Sbjct 729 GATAGTGTATCTACTTTCAGAGACAAAATCTGCAAAGAGCATGAACAGTGTTTCCCAAGT 788
Query 139 TTTGG-AAACATCACTATCTCCGCTTTGAAGGTTA-ACTGTTGCGGTCAACTTTATCATT 196
||||| ||| ||||| ||||| ||||||||||||| | ||| | ||||||||||||||||
Sbjct 789 TTTGGGAAA-ATCACCATCTCTGCTTTGAAGGTTAGA-TGTGGTGGTCAACTTTATCATT 846
Query 197 TAGTTGATTCTCTGACTTTGAACACGGCTTTCCAAAGCAACGAATCGTTTCTTTTTGTTG 256
| |||||||| |||| |||||||| ||||||| ||||||||| |||||||| ||||| |
Sbjct 847 TGGTTGATTCGCTGATTTTGAACATAGCTTTCCCAAGCAACGACTCGTTTCTATTTGTGG 906
Query 257 ATGTGCTGAGGGTTGAGGAGAAGGGTAAAATGCTGACTGGAGAAACTCCTTTGTCAAACC 316
| ||| |||| |||||||||||||||| ||||||||||||||| || |||| |||||||
Sbjct 907 ACGTGGTGAGTGTTGAGGAGAAGGGTATTATGCTGACTGGAGAAGCTGCTTTTTCAAACC 966
Query 317 CTA-GTTTACTTGAGAGAGAGACCAATGATCTGACTATTAAGGAAGCTCCGGTAACCCAA 375
||| ||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 967 CTAAGTT-ACTTGAGAGAGAGACCAATGATCTGACGATTAAGGAAGCTCTGGTAACACAA 1025
Query 376 GCTGGTGATGATAAAACTAAAAAGAGGAAAC-TGAAAAGTTTGGATAGTAC-CAA---AA 430
|||| |||| | ||||||| ||||||||||| | |||| || ||||| | || ||
Sbjct 1026 GCTGCTGATAAGAAAACTAGAAAGAGGAAACAT-AAAACTTCAGATAGCGCGCATGCCAA 1084
Query 431 -GAA-GTCATAAGAAACGATCTCTTGGGGATC-AGTCAAGTGGA-AAAGGAGAGGTTG-A 485
||| ||| ||||||||| |||||||| || | ||||||||| | |||||||||||| |
Sbjct 1085 CGAAAGTCGTAAGAAACGCTCTCTTGGTGA-CGAGTCAAGTG-ATAAAGGAGAGGTTCCA 1142
Query 486 GTCTTTGGCAATGTCACCAACAGGAAAAGATCTTGAAAAGGGAGAAAAAAGTGCTGCTAC 545
|| || || || | ||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1143 A-CT--GG-AA---CA--AT-AGGCAAAGACCTTGAAAAGGGAGAAAAGAGTGCTGCTAC 1192
Query 546 GATTGACCAAGAGAATGATCTTGCACTTGTGGATGATGAGAACGAGAGTCATGAAGAAGA 605
| |||| |||||||| |||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 1193 GGTTGAACAAGAGAAGGATCTTGCACTTGTGGATGATGAGAAAGAGAGTCACAAAGATGA 1252
Query 606 TGTTCGTGTAGGAGCAATAGTAGAAGCTCCAAGTGCTTCGAAA-AATCTTTTAACTGCTG 664
|||| || ||||||||||||| |||||||||||||| | ||| ||||||||||||||||
Sbjct 1253 TGTTTGTTTAGGAGCAATAGTCCAAGCTCCAAGTGCTGC-AAATAATCTTTTAACTGCTG 1311
Query 665 AATTTTTAGACATCAATCAATCTGCTGATGTTGAGAACGA 704
|||| |||||| |||||||||| ||||||||||||| |||
Sbjct 1312 AATTGTTAGACGTCAATCAATCCGCTGATGTTGAGAGCGA 1351
Score = 111 bits (60), Expect = 2e-23
Identities = 67/70 (96%), Gaps = 1/70 (1%)
Strand=Plus/Plus
Query 733 AAATATGCTGATGAGGCTACTACATCTGTGAAGGCTGCTAAGAAAGGAAGGACAAAGAAA 792
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1467 AAAGATGCTGATGAGGCTACTACATCTGTGAAGGCTGCTAAGAAAGGAAGGGCAAAGAAA 1526
Query 793 GACAAGGCAG 802
|||||| |||
Sbjct 1527 GACAAG-CAG 1535
> Ahg928862 jgi|Araly1|928862|scaffold_301319.1
Length=952
Score = 571 bits (309), Expect = 6e-162
Identities = 389/428 (91%), Gaps = 4/428 (1%)
Strand=Plus/Plus
Query 1178 ATCAGACAAACAATGTGGTCGATCCTAGGACCTTGATATTCAAGAAGAACATGTATGGGA 1237
||||||||||||||| ||||||||| || ||||||| || |||||||| | |||||||
Sbjct 292 ATCAGACAAACAATGCAGTCGATCCTCGGTCCTTGATGTTTAAGAAGAATACATATGGGA 351
Query 1238 AGCCTGAGGTAGATTGGCAGAGTTATAAGAACTGTGATAGCCCACCATTGCATTTTAACA 1297
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| || |
Sbjct 352 AGCCTGAGGTAGATTGGCAGAATTATAAGAACTGTAATAACCCACCATTGCATTTCAATA 411
Query 1298 TCTCCCACACAGATTCATTGATTTCCTGTGGAGTGACTGTACATGTTCCTGTTGGTATTG 1357
||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||| |
Sbjct 412 TCTCCCACACAGATTCATTAATTGCCTGTGGGGTGACTGTACATGTTCCGGTTGGTATCG 471
Query 1358 ATCTTGAAGA-AATGGAAAGGAAGATAAAACATGATGTCTTAGCATTAGCAGAAAGATTT 1416
|| ||||||| || |||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 472 ATGTTGAAGACAA-GGAAAGGAAGATTAAACATGACGTCTTAGCATTTGCAGAAAGATTC 530
Query 1417 TACTCTGCTGATGAAGTGAAGTTTTTGTCAGCTATACCAGACCCGG-AAGTTCAGCGAAA 1475
|||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||
Sbjct 531 TACTCTGCTGATGAAGTGAAGTTTTTGTCAACTATACCGGACCCGGAAAG-TCAGCGAAA 589
Query 1476 GGAGTTTATTAAGTTATGGACTCTTAAGGAAGCATATGTGAAAGCATTAGGAAAAGGCTT 1535
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 590 GGAGTTTATTAAGTTATGGACTCTAAAGGAGGCATATGTGAAAGCATTAGGAAAAGGGTT 649
Query 1536 CTCTGGTGCACCTTTTAATACCTTCACAATCCAGTCTAAGGCTGGAACAAATGGAGGCTA 1595
|||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| ||
Sbjct 650 TTCTGCTGCACCTTTTAATACCTTCACAATCCAATCTAAGGCTGGAACAAAAGGAGAATA 709
Query 1596 CAATCTTT 1603
||||||||
Sbjct 710 CAATCTTT 717
Score = 189 bits (102), Expect = 7e-47
Identities = 128/140 (91%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 1635 TTTGCAA-ACATCTGAAATGTCTGTCGA-TTCACAGGAGAAGACAAAGAAATGCAACGGA 1692
||||||| |||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct 715 TTTGCAAGACATCTGAAATGACT-ACCAGTTCACTGGAGAAGACAAACAATTGCAACGGA 773
Query 1693 GAATGGAAGTTTGCCCTATTGGAGTTGGCTGATTCTCATTATGCTGCAATCTGTATTGAA 1752
| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGATGGAAGTTTTCCCTTTTGGAGTTGGCTGATTCTCATTATGCTGCAATCTGTATTGAA 833
Query 1753 GATGATCAAGCTAGTGGAGG 1772
||||||||||||||||||||
Sbjct 834 GATGATCAAGCTAGTGGAGG 853
> Ahg924117 jgi|Araly1|924117|scaffold_105398.1
Length=958
Score = 483 bits (261), Expect = 3e-135
Identities = 498/607 (82%), Gaps = 38/607 (6%)
Strand=Plus/Plus
Query 42 TATGGATACTCGTCTGGGCCTTCTCATGGACAAG-GATGATACTGTATCTACATTCAAAG 100
||| |||||||||||||| |||||| | ||| || ||||||| ||||||| | |||| ||
Sbjct 83 TATTGATACTCGTCTGGGACTTCTCCTTGAC-AGTGATGATAGTGTATCTGCTTTCAGAG 141
Query 101 AGAAAATCTGCAAAGAGCATGAACAGTGTTTCCCTAGTTTTGGAAACATCACTATCTCCG 160
| ||||||||||| || ||||||||||||||||| ||| |||||| ||| ||| |||| |
Sbjct 142 AAAAAATCTGCAAGGAACATGAACAGTGTTTCCCAAGTGTTGGAAGCATTACTGTCTCTG 201
Query 161 CTTTGAAGGTTAACTGTTGCGGTCAACTTTATCATTTAGTTGATTCT-CTGACTTTGAAC 219
||||||||||||| | | | |||||| ||||||| | | ||||| | ||| |||||||
Sbjct 202 CTTTGAAGGTTAAATATGGTGGTCAATTTTATCACGTGGCTGATT-TAATGATTTTGAAC 260
Query 220 ACGGCTTTCCAAAGC---A---ACGA--A-TCGTTTCTTTTTGTTGATGTGC-TGAGGGT 269
| | |||||||||| | || | | |||||||| ||||||||||| | |||||||
Sbjct 261 AATGTTTTCCAAAGCATAAGTGACAACCACTCGTTTCTATTTGTTGATGT-CTTGAGGGT 319
Query 270 TGAGGAGAAGGGTAAAATGCTGACTGGAGAAA-CTCCTTTGTCAAACCCT-AGTTTACTT 327
|||||||||||||| |||||||||||| ||| || |||| |||| |||| || |||||
Sbjct 320 TGAGGAGAAGGGTATTATGCTGACTGGA-AAAGCTTCTTTTTCAAGCCCTAAG-CTACTT 377
Query 328 GAGAGAGAGACCAATGATCTGACTATTAAGGAAGCTCCGGTAACCCAAGCTGGTGATGAT 387
|||| ||||||||||||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 378 GAGATAGAGACCAATGATATGACGGTTAAGGAAGCTCCGGTAACCCAAGCTGGTGATAAG 437
Query 388 AAAACTAAAAAGAGGAAAC-TGAAAAGTTTGGATAGTAC-CAA---AAG-AA-GTCATAA 440
|||| || ||||||||||| | |||| ||| ||||| | || || || ||| |||
Sbjct 438 AAAAGTAGAAAGAGGAAACAT-AAAACTTTAGATAGCGCGCATGCCAACCAAAGTCGTAA 496
Query 441 GAAACGATCTCTTGGGGATCAGTCAAGTGGAAAAGGAGAGGTTG-AGTCTTTGGCAATGT 499
|||| | |||||||| || ||||||||||| |||||||||||| | || || ||
Sbjct 497 GAAATGCTCTCTTGGTGACCAGTCAAGTGGTAAAGGAGAGGTTCCAA-CT--GG-AA--- 549
Query 500 CACCAACAGGAAAAGATCTTGAAAAGGGAGAAAAAAGTGCTGCTACGATTGACCAAGAGA 559
|| | ||| ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 550 CA--AT-AGGCAAAGACCTTGAAAAGGGAGAAAAAAGTGCTGCTACGGTTGACCAAGAGA 606
Query 560 ATGATCTTGCACTTGTGGATGATGAGAACGAGAGTCATGAAGAAGATGTTCGTGTAGGAG 619
| ||||||||||||||||||||||||||||||||||| |||| |||||| || ||||||
Sbjct 607 AGGATCTTGCACTTGTGGATGATGAGAACGAGAGTCACAAAGATGATGTTTGTTTAGGAG 666
Query 620 CAATAGT 626
|||||||
Sbjct 667 CAATAGT 673
Score = 113 bits (61), Expect = 5e-24
Identities = 70/74 (95%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 729 TGGAAAATATGCTGATGAGGCTACTACATCTGTGAAGGCTGCTAAGAAAGGAAGGACAAA 788
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 833 TGGAAAAGATGCTGATGAGGCTACTACATCTGTGAAGGTTGCTAAGAAAGGAAGGGCAAA 892
Query 789 GAAAGACAAGGCAG 802
|||||||||| |||
Sbjct 893 GAAAGACAAG-CAG 905
> Ahg322589 jgi|Araly1|322589|fgenesh1_pm.C_scaffold_5000133
Length=2265
Score = 93.5 bits (50), Expect = 6e-18
Identities = 61/66 (92%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 1851 TAACGAAGATGGAGAGAAAGGAA-ATGTGTACCAGTTTGGAGTGATACTACTACAGCTCA 1909
||| |||||| |||||||| ||| |||||||||||||||||||||||||||||||| |||
Sbjct 1899 TAATGAAGATAGAGAGAAA-GAAGATGTGTACCAGTTTGGAGTGATACTACTACAGATCA 1957
Query 1910 TCACAG 1915
||||||
Sbjct 1958 TCACAG 1963
Score = 91.6 bits (49), Expect = 2e-17
Identities = 69/78 (88%), Gaps = 3/78 (4%)
Strand=Plus/Plus
Query 2031 TGGAATCTGCAGTATACAATTCAAGTGCAGCAAAAGATGGAGGCCAAGCAGTGGGAATCA 2090
||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||
Sbjct 2176 TGGAATCTGCAGTATACAATTCAAGTGCAGCAAG-GATGGAGACCGAGCAGTGGGAACCA 2234
Query 2091 TGAAAATCATCTATGAAG 2108
|||| || || ||||||
Sbjct 2235 TGAA--TCGTCCATGAAG 2250
> Ahg471612 jgi|Araly1|471612|fgenesh2_kg.1__1566__AT1G14390.1
Length=2202
Score = 87.9 bits (47), Expect = 3e-16
Identities = 60/66 (91%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 1851 TAACGAAGATGGAGAGAAAGGAA-ATGTGTACCAGTTTGGAGTGATACTACTACAGCTCA 1909
||| || ||||||||| |||||| |||||||||||||||||||||||||||| ||| |||
Sbjct 1845 TAATGATGATGGAGAG-AAGGAAGATGTGTACCAGTTTGGAGTGATACTACTTCAGATCA 1903
Query 1910 TCACAG 1915
||||||
Sbjct 1904 TCACAG 1909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81322673075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5