BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02780.1
Length=2314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322589 jgi|Araly1|322589|fgenesh1_pm.C_scaffold_5000133 1871 0.0
Ahg471612 jgi|Araly1|471612|fgenesh2_kg.1__1566__AT1G14390.1 771 0.0
> Ahg322589 jgi|Araly1|322589|fgenesh1_pm.C_scaffold_5000133
Length=2265
Score = 1871 bits (1013), Expect = 0.0
Identities = 1185/1268 (93%), Gaps = 11/1268 (1%)
Strand=Plus/Plus
Query 1 ATGCAGAtttctcttcaaatccatttatcttccttcacttttcttcttcttatt-ttcct 59
||||||| ||||| ||||| ||| ||| |||||||||||| ||||||||| || || ||
Sbjct 1 ATGCAGAAGTCTCTCCAAATTCATGTATTTTCCTTCACTTTCCTTCTTCTTCTTCTT-CT 59
Query 60 tcttccAGTACTCTCTGAGTCTCAGGTAGCTTCAAGTGAATCACAAACTCTTCTTGAAAT 119
||||||| ||||| | || |||||| || |||||||||||||||||||||||||||||||
Sbjct 60 TCTTCCACTACTCACAGACTCTCAGCTAACTTCAAGTGAATCACAAACTCTTCTTGAAAT 119
Query 120 CCAGAAGCAACTACAATATCCACAGGTTCTTCAATCATGGACTGATACAACCAACTTCTG 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 CCAGAAGCAACTACAATATCCACAGGTTCTTCAATCATGGACTGATACAACCAATTTCTG 179
Query 180 TCACATTCGTCCGTCTCCTTCCTTGAGAATCATCTGCCTCCATGGTCACGTAACAGAGTT 239
||||||||||| ||| ||||||| | |||||||||| || |||||||||||||||||||
Sbjct 180 CCACATTCGTCCTTCTTCTTCCTTAACAATCATCTGCTTCAATGGTCACGTAACAGAGTT 239
Query 240 AACCGTCACCGGGAACAGAACTAGTAAGCTCTCTGGAAGTTTTCATAAACTCTTCACTCT 299
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 240 AACTGTCACCGGGAACAGAACCAGTAAGCTCTCTGGAAGTTTTCATAAACTCTTTACTCT 299
Query 300 TCTTACACAACTATCGAGCTTAAAGACTTTGTCTCTTACTTCTCTCGGAATTTCTGGTTC 359
||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 300 TCTTACACAACTATCAAGCTTAAACACTTTGTCTCTTACCTCTCTTGGAATTTCTGGTTC 359
Query 360 TCTTTCTCCTAAGATCATCACTAAGCTATCACCGTCTCTTG-AGTCTCTCAATCTTAGCT 418
||| ||||||||||||||||| ||| ||||||| ||||||| | ||||||||||| ||||
Sbjct 360 TCTCTCTCCTAAGATCATCACCAAGTTATCACCTTCTCTTGTA-TCTCTCAATCTAAGCT 418
Query 419 CTAATTTCATCTCTGGGAAGATTCCAGAAGAGATTGTGTCTTTGAAGAATCTGAAAAGCC 478
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 419 CTAATTTCATCTCCGGGAAGATCCCAGAAGAGATTGTGTCTTTGAAGAATCTGAAAAGCC 478
Query 479 TTGTTTTAAGAGACAATATGTTCTGGGGTTTTGTCTCTGATGATCTCAGAGGATTATCAA 538
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 479 TTGTTTTAACAGACAATATGTTCTGGGGTTTTGTCTCTGATGATCTCAGAGGATTGTCGA 538
Query 539 ATCTTCAAGAGCTGGATTTGGGAGGTAATAAACTCGGTCCTGAAGTTCCTTCACTCCCAA 598
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 539 ATCTTCAAGAGCTGGATTTGGGAGGTAATAAACTCGGTCCTAAAGTTCCTTCACTACCAA 598
Query 599 GTAAGCTC-ACCACTGTTTCATTGAAGAACAACTCCTTTAGATCCAAGATTCCAGAACAG 657
|||| || | |||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 599 GTAA-CTTGATCACTGTTTCATTGAAGAACAACTCTTTTAGATCCAGGATTCCAGAACAT 657
Query 658 ATCAAGAAGCTG-AATAACCTTCAAAGTTTAGACCTTTCTTCCAACGAATTCACCGGGTC 716
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATCAAGAAG-TGGAATAAGCTTCAAAGTTTAGACCTTTCTTCCAACGAATTCACCGGGTC 716
Query 717 GATTCCAGAGTTTCTGTTTTCGATTCCTTCTCTTCAAATTCTCAGTTTGGATCAGAATCT 776
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 717 GATTCCAGAGTTTCTGTTTTCGCTTCCTTCTCTTCAAATTCTCAGTTTGGATCAGAATAT 776
Query 777 GTTAAGCGGGTCACTTCCAAATTCTTCTTGCACCTCCTCAAAGATTATAACTTTAGACGT 836
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 GTTAAGCGGGTCACTTCCAAATTCTTCTTGCAGCTCCTCAAAGATTATAACTTTAGACGT 836
Query 837 GTCTCACAATCTTTTAACTGGAAAGCTTCCTTCTTGCTACTCTTCAAAGAGTTTCAGTAA 896
||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| ||
Sbjct 837 TTCTCACAATCTTTTAACCGGAAAACTTCCTTCTTGCTACACTTCAAAGAGTTTCAGAAA 896
Query 897 TCAGACAGTGCTTTTCTCATTCAACTGCTTGTCTTTGATTGGCACTCCTAACGCGAAGTA 956
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 897 TCAGACAGTGCTTTTCTCATTCAATTGCTTGTCTTTGGTTGGCACTCCTAACGCGAAGTA 956
Query 957 TCAGCGTCCGCTTTCTTTCTGTCAAAACCAAGCAAGCAAGGCAATAGCTGTGGAACCTAT 1016
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 957 TCAGCGTCCGCTTTCTTTCTGTCAAAACCAAGCAAGCAAAGCAATAGCTGTGGAACCTGT 1016
Query 1017 CCCCAAGGCTAAAGATAAAGATTCTGCAAGAATCAAACTCGGGTTAGTGATTTTGATAAT 1076
|| ||||| |||||| |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1017 CCACAAGGTTAAAGAGAAAGATTCTGCAAGAATCAAACTCGGTTTAGTGATTCTGATAAT 1076
Query 1077 CATCGGTGTGATCATCCTTGCAGCAATTTTGGTTCTGTTGGTTTTGATTGCCCTCAAAAG 1136
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1077 CATCGGTGTGATCATCCTTGCAGCAATTTTGGTTCTGTTGGTTTTGATTGTCCTGAAAAG 1136
Query 1137 AAGAAGATCAAGATCAGAAGATGATCCTTTTGAAGTGAACAACAGCAACAA---TGAGAG 1193
|||||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||
Sbjct 1137 AAGAAGATCAAGATCAGAAGCTGATCCTTTTGAAGTAAACAACAACAACAACAATGAGAG 1196
Query 1194 ACATGCCTCTGATAAAGTCTCTGTTTGCAGCACCACAACTGCCAGCTCTAAGTCATTACC 1253
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1197 ACATGCCTCTGATAAAGTCTCAGTTTGCAGCACCACAACCGCCAGCTCTAAGTCATTACC 1256
Query 1254 AGATTCAA 1261
||| ||||
Sbjct 1257 AGACTCAA 1264
Score = 1495 bits (809), Expect = 0.0
Identities = 916/969 (95%), Gaps = 2/969 (0%)
Strand=Plus/Plus
Query 1262 GACGTGTACCACAGACAATGAGATCTGCAGTGATTGGTTTGCCACCGTACCGCGTTTTCT 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1298 GACGTGTACCACAGACAATGAGATCTGCAGTGATTGGTTTGCCACCGTACCGCGTCTTCT 1357
Query 1322 CCTTGGAGGAACTGGAAGAAGCGACTAACGACTTTGATGCAGCTAGCCTGTTCTGCGAAC 1381
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1358 CCTTGGAGGAACTGGAAGAAGCGACTAACGACTTTGATGCAGCAAGTCTTTTCTGCGAAC 1417
Query 1382 AGCTGTATAGAGGTTGTCTAAGAGAAGGCATACCAGTGACAGTGCGAGT-TATCAAGCTG 1440
||||||| | |||| |||| ||||||||||||||||| ||||||||| | ||||||||||
Sbjct 1418 AGCTGTACAAAGGTCGTCTCAGAGAAGGCATACCAGTAACAGTGCGA-TGTATCAAGCTG 1476
Query 1441 AAGCAGAAGAGCTTGCCACAAAGCTTAGCTCAACAGATGGAAGTTTTATCAAAGCTAAGG 1500
||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 1477 AAGCAGAAGAGTTTGCCACAAAGCTTAGCTCAGCAGATGGAAGTTTTGTCGAAGCTAAGG 1536
Query 1501 CATATGCATTTGGTTAGCGTTCTTGGACACTCCATTGCCAGTAACCAAGACCACAATCAA 1560
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1537 CATATGCATTTGGTTAGCGTTCTTGGACACTGCATTGCCAGTAACCAAGACCACAATCAA 1596
Query 1561 CACGCTGGACACACCATCTTCATTGTTCAAGAATACATCTCTAGTGGATCATTGCGGGAC 1620
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1597 CACGCTGGAAACACCATCTTCATTGTCCAAGAATACATCTCTAGTGGATCATTGCGGGAC 1656
Query 1621 TTTCTCACAAACTGTAGGAAGAAAGAGGTACTGAAATGGCCTCAGAGAATGGCGATAGCA 1680
||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1657 TTTCTTACAAACTCTAGGAAGAAAGAAGTACTGAAATGGCCTCAGAGAATGGCGATAGCC 1716
Query 1681 ATAGGAGTCGCTCGAGGGATACAGTTCTTGCATATGGGAGTAGCACCAGGAATCTTTGGG 1740
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1717 ATAGGAGTCGCTCGAGGGATACAGTTCTTGCACATGGGAGTAGCACCAGGGATCTTTGGG 1776
Query 1741 AACAATTTGAAGATAGAGAACATCATGCTTGATGAAACACTCACAGTAAAAATCAGTGGC 1800
|||||| |||| |||||||| ||||||||||||||||||||||| || ||||| |||||
Sbjct 1777 AACAATCTGAAAATAGAGAATATCATGCTTGATGAAACACTCACCGTGAAAATTAGTGGA 1836
Query 1801 TATACTATTCCTTTACCATCCAAGGTTGGAGAAGAGAGGCCTCAAGCCAAAAAACCTCGG 1860
|||||||||||||||||| |||||||||||||||| || |||||||||||| | ||| ||
Sbjct 1837 TATACTATTCCTTTACCAACCAAGGTTGGAGAAGAAAGCCCTCAAGCCAAACATCCTTGG 1896
Query 1861 AGTAATGAAGATAGAGAGAAAGAAGATGTGTACCAGTTTGGAGTGATACTACTACAAATC 1920
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1897 AGTAATGAAGATAGAGAGAAAGAAGATGTGTACCAGTTTGGAGTGATACTACTACAGATC 1956
Query 1921 ATCACAGGGAAAGTAGTTGCTGCAGGATCTTCAGAGATGGGAAGTTTGAAGCTTCAGCTG 1980
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1957 ATCACAGGCAAAGTAGTTGATGCAGGATCTTCAGAGATGGGAAGTTTGAAGCTTCAGCTC 2016
Query 1981 GAGAACGGTTTGAGAGATGAACCATCAGTATTGAGCAGCTTAGCAGATCCATCTGTTAAA 2040
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2017 GAGAACGGTTTGAGAGATGAACCATCAGTATTGAGAAGCTTAGCAGATCCATCTGTTAAC 2076
Query 2041 GGATCATATGCTTATGAGTCGTTGAGGACGACAGTAGAGTTTGCTATCAACTGTCTTTGC 2100
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2077 GGGTCATATGCTTATGAGTCGTTGAGGACGACAGTAGAGTTTGCTATCAACTGTCTTTGC 2136
Query 2101 GAAGATCAGAGCAAGCGTCCTTCCATAGAAGACGTTGTGTGGAATCTACAGTATACAATT 2160
|||||||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 2137 GAAGATCAAAGCAAGCGGCCTTCGATAGAAGATGTTGTGTGGAATCTGCAGTATACAATT 2196
Query 2161 CAAGTGCAGCAAGGATGGAGACCAAGCAGTGGGAATCATGAATCATCCATGAAAGCAATA 2220
||||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||
Sbjct 2197 CAAGTGCAGCAAGGATGGAGACCGAGCAGTGGGAACCATGAATCGTCCATGAAGGCAATA 2256
Query 2221 TATGAATGA 2229
|||||||||
Sbjct 2257 TATGAATGA 2265
> Ahg471612 jgi|Araly1|471612|fgenesh2_kg.1__1566__AT1G14390.1
Length=2202
Score = 771 bits (417), Expect = 0.0
Identities = 789/966 (82%), Gaps = 35/966 (4%)
Strand=Plus/Plus
Query 1243 AAGTCATTACCAGATTCAAGACGTGTACCACAGACAATGAGATCTGCAGTGATTGGTTTG 1302
||| || |||||||| ||||||| ||||| || || |||||||| || |||||||| |
Sbjct 1231 AAGACAGTACCAGATCCAAGACGCGTACCGCAAACCATGAGATCCGCGGTGATTGGACTA 1290
Query 1303 CCACCGTACCGCGTTTTCTCCTTGGAGGAACTGGAAGAAGCGACTAACGACTTTGATGCA 1362
|||| |||| ||||||| |||||||||||||||||||| || ||| |||||||||||
Sbjct 1291 TCACCCTACCAAATTTTCTCGTTGGAGGAACTGGAAGAAGCCACAAACAACTTTGATGCA 1350
Query 1363 GC-TAGC-CTGTTCTGCGAACAGCTGTATAGAGGTTGTCTAAGAGAAGGCATACCAGTGA 1420
|| | | ||| | | |||||| |||||| ||||||||| |||||||||||| ||||||
Sbjct 1351 GCGAATCTCTG-T-GGAGAACAGTTGTATAAAGGTTGTCTTAGAGAAGGCATAGCAGTGA 1408
Query 1421 CAGTGCGAGT-TATCAAGCTGAAGCAGAAGAGCTTGC--CACA-AAGCTTAGCTCAACAG 1476
||||| | || ||| |||||||| ||||||| || | |||| || || ||||||||
Sbjct 1409 CAGTGAG-GTGTATTAAGCTGAAACAGAAGA-ATT-CAACACAGAA-TTTGGCTCAACAA 1464
Query 1477 ATGGAAGTTTTATCAAAGCTAAGGCATATGCATTTGGTTAGCGTTCTTGGACACTCCATT 1536
|||||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||
Sbjct 1465 ATGGAAGTTTTATCAACGCTAAGGCATATGCATTTGGTCAGTGTTCTTGGACACTGCATT 1524
Query 1537 GCCAGTAACCAAGACCA-CAATCAACACG-CTGGACACACCATCTTCATTGTTCAAGAAT 1594
| | | | ||||| || | ||| | | | | ||| |||||| ||||| || |||||||
Sbjct 1525 GGTACTTATCAAGATCATC-ATCCATATGCCGGGA-GCACCATATTCATAGTCCAAGAAT 1582
Query 1595 ACATCTCTAGTGGATCATTGCGGGACTT-TCTCA-CAAACTGTAGGAAGAAAGAGGTACT 1652
||||||||| || || ||| |||| || |||| | |||| || |||||||||||| |
Sbjct 1583 ACATCTCTAACGGGTCTTTGAGGGA-TTACCTCATC-GACTGGAGAAAGAAAGAGGTATT 1640
Query 1653 GAAATGGCCTCAGAGAATGGCGATAGCAATAGGAGTCGCTCGAGGGATACAGTTCTTGCA 1712
|||||||||||||||||| ||||||| || ||||| |||||||| || |||||||||||
Sbjct 1641 AAAATGGCCTCAGAGAATGTCGATAGCGATTGGAGTTGCTCGAGGAATTCAGTTCTTGCA 1700
Query 1713 TATGGGAGTAGCACCAGGAATCTTTGGGAACAATTTGAAGATAGAGAACATCATGCTTGA 1772
| ||||| |||||||||||||||||||| |||||| |||||||||| | | |||||
Sbjct 1701 CACAGGAGTGGCACCAGGAATCTTTGGGAATAATTTGGAGATAGAGAATGTTTTACTTGA 1760
Query 1773 TGAAACACTCACAGTAAAAATCAGTGGCTATACTATTCCTTTACCATCCAAG-GTTGGAG 1831
|||||||||||| |||||| ||||||| |||||||||||||||||||||||| ||| |
Sbjct 1761 TGAAACACTCACTGTAAAACTCAGTGGTTATACTATTCCTTTACCATCCAAGAGTTTTA- 1819
Query 1832 AAGAGAGGCCTCA-AGCCAAAAAACCTCGGAGTAATGAAGATAGAGAGAAAGAAGATGTG 1890
| | | | | | | || | |||||||| ||| ||||||| |||||||||
Sbjct 1820 TTTTTA----T-ATATACGGAGAGCC-C-TAGTAATGATGATGGAGAGAAGGAAGATGTG 1872
Query 1891 TACCAGTTTGGAGTGATACTACTACAAATCATCACAGGGAAAGTAGTTG-CTGCAGGATC 1949
||||||||||||||||||||||| || ||||||||||| |||||| ||| | || | |||
Sbjct 1873 TACCAGTTTGGAGTGATACTACTTCAGATCATCACAGGCAAAGTA-TTGGCGGCTGCATC 1931
Query 1950 TTCAGAGATGGGAAGTTTGAAGCTTCAGCTGGAGAACGGTTTGAGAGATGAACCATCAGT 2009
||||||| |||| || ||||||||||||||||||||| |||||||||| ||||||| ||
Sbjct 1932 TTCAGAGTTGGGGAGCTTGAAGCTTCAGCTGGAGAACAGTTTGAGAGACGAACCATTGGT 1991
Query 2010 ATTGAGCAGCTTAGCAGATCCATCTGTTAAAGGATCATATGCTTATGAGTCGTTGAGGAC 2069
||| | ||||| |||||||| | ||| | |||| ||||||| |||||||| ||||| ||
Sbjct 1992 GTTGCGTAGCTTGGCAGATCCGTGTGTGAGAGGAACATATGCATATGAGTCATTGAGAAC 2051
Query 2070 GACAGTAGAGTTTGCTATCAACTGTCTTTGCGAAGATCAGAGCAAGCGTCCTTCCATAGA 2129
|||||||||||||| || ||||||||||| ||||||||||| || || || || |||||
Sbjct 2052 CACAGTAGAGTTTGCCATTAACTGTCTTTGTGAAGATCAGAGGAATCGGCCATCGATAGA 2111
Query 2130 AGACGTTGTGTGGAATCTACAGTATACAATTCAAGTGCAGCAAGGATGGAGACCAAGCAG 2189
|| ||||| |||||||| ||||| ||||||||||||||||| ||||||| | ||||||
Sbjct 2112 GGATGTTGTATGGAATCTGCAGTACACAATTCAAGTGCAGCAGGGATGGA--C-AAGCAG 2168
Query 2190 TGGGAA 2195
||||||
Sbjct 2169 TGGGAA 2174
Score = 540 bits (292), Expect = 2e-152
Identities = 857/1116 (77%), Gaps = 93/1116 (8%)
Strand=Plus/Plus
Query 41 ttcttcttcttatt-ttccttcttccAGTACTCTCTGAGTCTCAG-GTAGCT-TCAAGTG 97
||||||||||| || || ||||| ||| ||||||| || || ||| || | |||||||
Sbjct 50 TTCTTCTTCTTCTTCTT-CTTCTGCCACTACTCTCAGAATCACAGCTTA--TATCAAGTG 106
Query 98 AATCACA-AACTCTTCTTGAAATCCAGAAGCAACTACAATATCCA-CAGGTTCTTCAATC 155
||||| | |||||| || |||||||| ||||| ||||||||||| || |||||| |||
Sbjct 107 AATCA-AGAACTCTACTAGAAATCCAAAAGCATTTACAATATCCACCA-ATTCTTCGATC 164
Query 156 ATGGACTG-ATA-C-AACCAACTTCTGTC-ACATTCGTCCGTCTCCTTCCTTGAGAATCA 211
||||| | | | | ||||| ||||| | || | | | | |||||||| || | ||||
Sbjct 165 ATGGA--GCA-ACCGGACCAATTTCTG-CTACCTCCCTTCTTCTCCTTCTTTCAAAATCC 220
Query 212 TCTGCCTCCATGGTCACGTAACAGAGTTAACCGTCACCGGGAACAGAACTAGT-AAGCTC 270
|||| || ||||||| ||||| || ||||||||||| ||||||||||| || ||||||
Sbjct 221 TCTGTTTCAATGGTCATGTAACCGAATTAACCGTCACTGGGAACAGAAC-CGTGAAGCTC 279
Query 271 TCTGGAAG-T-TTTCA--TA--AACTCTTCACTCTTCTTACACAACTATCGAGCTTAAAG 324
||||||| | || || | |||||||||| |||||||| |||| || | |||||||
Sbjct 280 CCTGGAAGATATTCCAGCGACTCACTCTTCACTGTTCTTACAAAACTCTCAAACTTAAAG 339
Query 325 ACTTTGTCTCTTACT-TCTCTCGGAATTTCTGGTTCTCTTTCTCCTAAGATCATCACTAA 383
|| ||||||| | | |||||||| || |||||| |||| || | |||||||| | |
Sbjct 340 ACATTGTCTC-TGGTCTCTCTCGGCATCTCTGGTCCTCTCCCTACAAAGATCAT--C-AG 395
Query 384 GCTATCACCGTCTCTTGAGTCTCTCAATCTTAGCTCTAATTTCATCTCTGGGAAGATTCC 443
| |||| | ||||| ||||||| ||||| || ||||||||||| || ||||| |||||
Sbjct 396 GTTATCTTCATCTCTCCAGTCTCTGAATCTCAGTTCTAATTTCATATCGGGGAAAATTCC 455
Query 444 -AGAAGAGATTGT-GTCTTTGAAGAATC-TGAAAAGCCTTGTT-TTAAG-AGACAATATG 498
| |||||| | | ||| |||||||| | ||| ||| |||||| || | | ||||| ||
Sbjct 456 TA-AAGAGA-TCTCGTCGTTGAAGAA-CTTGAGAAGTCTTGTTCTT--GCAAACAATCTG 510
Query 499 TTCTGGGGTTTTGTCTCTGATGATCTCAGAGGATTATCAAATCTTCAAGAGCTGGATTTG 558
||| || ||| || ||||||||||||||| || ||||| ||||||||| ||||
Sbjct 511 TTCAATGGAAGTGT-TC--CTGATCTCAGAGGATTGTCGAATCTCCAAGAGCTGAATTTA 567
Query 559 GGAGGTAATAAACTCGGTCCTGAAG---TTCCTTCACTCCCAAGTAAGC-TCACCACTGT 614
|| |||||||||||||||||||||| |||||||||| ||||||| | | | ||| ||
Sbjct 568 GGCGGTAATAAACTCGGTCCTGAAGTTCTTCCTTCACTTGCAAGTAA-CTTGATCACCGT 626
Query 615 TTCATTGAAGAACAACTCCTTTAGATCCAAGATTCCAGAACAGATCAAGAAGCTGAATAA 674
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||
Sbjct 627 TTCATTGAAGAACAACTCTTTTGGATCCAAGATTCCAGAACAGATCAAGAAGCTGAGTAA 686
Query 675 CCTTCAAAGTTTAGACCTTTCTTCCAACGAA-TTCACCGGGTCGATTCCAGAGTTTC-TG 732
||||||| || || ||||| |||||| || ||||| ||||| || ||| || ||| ||
Sbjct 687 GCTTCAAAACTTGGATCTTTCCTCCAAC-AAGTTCACTGGGTCAATCCCA-AGATTCCTG 744
Query 733 TTTTCGATTCCTTCTCTTCA-AATTCTCAGTTTGG-ATCAGAATCT-GTTAAGCGGGTCA 789
|||||| ||||||| ||||| ||| || ||||||| | || || || | | || || |||
Sbjct 745 TTTTCGCTTCCTTCGCTTCAGAAT-CTAAGTTTGGCA-CAAAA-CTTGCTGAGTGGATCA 801
Query 790 CTTCCAAATTCTTC-TTG--CACCTCCTCAAAGATTATAACTTTAGACGTGTCTCACAAT 846
||||||||||| || ||| || |||| || | ||| || |||||| || |||| |||
Sbjct 802 CTTCCAAATTCATCGTTGTGCAGCTCC--AA-GCTTAGAATTTTAGATGTTTCTCGGAAT 858
Query 847 CTTTTAACTGGAAAGCTTCCTTCTTGCTACTCTTCAAAGAGTTTCAGTAATCAGACAGTG 906
||| | ||||| |||||||| ||||||| || ||| |||| | | |||||||||
Sbjct 859 CTTCTGACTGGGAAGCTTCCATCTTGCTTCTTTTCCAAGA-----A--A--CAGACAGTG 909
Query 907 CTTTTCTCATTCAACTGCTTGTCTTTGATTGGCACTCCTAAC-GCGAAGTATCAGCGTCC 965
|| ||| ||||||| ||||||||| | | || ||||| | || |||||||| |||||
Sbjct 910 CTCTTCACATTCAATTGCTTGTCTATAAAAGGTTCTCCTT-CTGCTAAGTATCAACGTCC 968
Query 966 -GCTTTCTTTCTGTCAAAACCAAGCAA-GCAAGGCAATAGCTG-TG-GAAC-CT-ATCCC 1019
| || | |||||| ||||| | |||| ||||| || |||||| || ||| || | | |
Sbjct 969 AG-TTACCTTCTGTGAAAACGAGGCAAAGCAAG-CAGTAGCTGCTGTGAAGTCTGA-CAC 1025
Query 1020 CAAGGCT-AA-A--G-ATAAA-GATTCTGCAAGAATCAAACTCGGGTTAGTGATTT-TGA 1072
|| | | || | | | ||| || | || ||||| ||||||| || |||||| | |
Sbjct 1026 TAAAGATCAAGAAAGGAAAAAAGAAGATACAGGAATCGAACTCGGATTGGTGATTGGT-A 1084
Query 1073 TAATCATCGGTGTGATCATCCTTGCAGCAATTTTGG 1108
| |||||||||||| || || || |||| ||||||
Sbjct 1085 TTATCATCGGTGTGGTCCTCGTTTCAGCGGTTTTGG 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87150480560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5