BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02790.1
Length=2067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484185 jgi|Araly1|484185|fgenesh2_kg.5__177__AT2G02790.1 3101 0.0
> Ahg484185 jgi|Araly1|484185|fgenesh2_kg.5__177__AT2G02790.1
Length=2044
Score = 3101 bits (1679), Expect = 0.0
Identities = 1930/2050 (94%), Gaps = 21/2050 (1%)
Strand=Plus/Plus
Query 1 GTGTAATTTCTCACTGTAACCACtttttggttttttAGGTCACTGCTCCGACG-AAGACC 59
||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| |
Sbjct 1 GTGTAATTTCTTACTGTATCCACTTTTTGGTTTTTTAGGTCACTGCTCCGACGAAAGAGC 60
Query 60 CTTCTAACAAGACAACATTTTGAAGAACATAACAGTAACGATTCGCTACATTGTTTCTAT 119
|||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||
Sbjct 61 CTTCTAACAAGACAACATTTTGAAGAACGTAAGAGTAACGATTCGGTACATTGTTTCTAT 120
Query 120 TTTTGTAGCAAGTTTCTAATTGTAGCCATTAGAAAAGATGGGAAAGACTCCAAGTCCTGG 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTGTAGCAACTTTCTAATTGTAGCCATTAGAAAAGATGGGAAAGACTCCAAGTCCTGG 180
Query 180 TAAATGGATCAAGTCTCTTCTTGGAAAGAAGTCATCGAAATCGAGTTTGGAGAAAGGAGG 239
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 181 TAAATGGATCAAGTCTCTTCTTGGGAAGAAGTCATCCAAATCGAGTTTGGAGAAAGGAGG 240
Query 240 CGAAAAATTGAGATCTGCAAAGAAAGAAGAGCTTGTGGTGAAGGTGAAGGATAATAATGT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGAAAAATTGAGATCTGCAAAGAAAGAAGAGCTTGTGGTGAAGGTGAAGGATAATAATGT 300
Query 300 CTCAAAGTTACCTACCGAACCACCTGTAGTTTCATCACAAGAAGTTGCAGCTACTCAAAC 359
||| ||||||||| | ||||| |||| | ||||||| ||||||||||||||||||||| |
Sbjct 301 CTCCAAGTTACCTTCTGAACCGCCTGCAATTTCATCTCAAGAAGTTGCAGCTACTCAATC 360
Query 360 TGTGGTCGTTCCTGATGTTGTAATTGCTGAGAAGCAACTAAGTGGAGACATTGAAGGCGA 419
||| || |||||||||||||| ||| | |||||||| | ||| ||||||||||||||| |
Sbjct 361 TGTAGTAGTTCCTGATGTTGTCATTACCGAGAAGCAGCCAAGCGGAGACATTGAAGGCAA 420
Query 420 TGAGTCATCGAATGTGAATCTTGAGTCAGGGAATGACTCTGAAGAAGTCAAGCTTGAAGA 479
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 TGAGTCATCGAATGTGAATCTTGAGTCAGGGAATGACTCTGAAGAAGGAAAGCTTGAAGA 480
Query 480 AGCTGCTACAAAGGTTCAAGCTGCTTTGAGAGCTCAGCAGGCCCGTGAAGAATCTCAGAA 539
||||||||||||||||||||||||| | ||||||| |||||||||||||||| ||||||
Sbjct 481 AGCTGCTACAAAGGTTCAAGCTGCTCTCCGAGCTCATCAGGCCCGTGAAGAATTTCAGAA 540
Query 540 CCTCAAAGGTATCACAAGGGTGCAAGCAGTTATCCGTGGTCACTTGGTCAGAAGACAAGC 599
|||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 541 CCTCAAAGGTATCATAAGGCTGCAAGCAGTTATCCGTGGTCACTTGGTTAGAAGACAAGC 600
Query 600 TGTTGCTACTTACTCGTGCATTTGGGGAATTGTGAAAGTACAAGCACTTGTTCGCGGGAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGTTGCTACTTACTCGTGCATTTGGGGAATTGTGAAAGTACAAGCACTTGTTCGCGGGAA 660
Query 660 GAAAGCTAGATCTTCAGAAACCGTGGCTCAACTTCAGAAAACAAATACGGAAACCGAGAC 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 661 GAAAGCTAGATCTTCAGAAACCGTGGCTCAACTCCAGAAAACAAATACGGAAACCGAGAC 720
Query 720 TTCTGAAACTTTGCAAGGAAGCACATACAGTTGGATGGAGAACCCTACAAAGCTCTCAAT 779
||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 721 TTCTGAAGCTTTGCAAGGAAGCACTTACAGTTGGATGGAGAATCCTACAAAGCTCTCCAT 780
Query 780 GATTGATAAGCTTTTGGTTTCGTCACCAACAACATTGCCTCTGAAGATCCAGTATAGTCC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GATTGATAAGCTTTTGGTTTCGTCACCAACAACATTGCCTCTGAAGATCCAGTATAGTCC 840
Query 840 TGAAGATCCTAACTCAGCCAAGGTGTGGCTTGGACGCTGGACGCAGTTGCAGGTTTGGGC 899
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 841 TGAGGATCCTAACTCAGCCAAGGTGTGGCTTGGACGCTGGACGCAATTACAGGTTTGGGC 900
Query 900 TCCTGGTCCAT-TGGTGGTTAAGAATCTGGTACCAAAATCTCAGACAAAGAAGCGAAGTT 958
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCCTGGTCC-TCTGGTGGTTAAGAATCTGGTACCAAAATCTCAGACAAAGAAGCGAAGTT 959
Query 959 TTCAAGCAGTCGAAGCGGAAAAGGGAAAACTTAAGAGAGGTGTCAGGAAACCAACCGGTG 1018
||||| |||| ||| ||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct 960 TTCAAACAGTTGAAACGGAAAAGGGAAAACTTAAGAAAGGTGTCAAGAAACCATCCGGTG 1019
Query 1019 TTTCAACTACTGCAAACAGCTCTACTAGCCGTTCAACAGCTGACAACGAAAAGCCTAAGC 1078
||||| ||| | |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1020 GTTCAAATACGGGGAACAGCTCGAGTAGCCGTTCAACAGCTGACAACGAAAAGCCTAAGC 1079
Query 1079 GAACTGTGAGGAAGGCCTCCACACTTGGTAAAGAACTTTCGAA-AATCGAGAACGACAAG 1137
|||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 1080 GAACTGTGAGGAAGGCCTCCACACTTGGTAAAGAACTTTC-AAGAATCGAGAATGACAAG 1138
Query 1138 TCTAAGCAGAGTTCAAGAAAAAGTACTAGCGCCATAAAGGAAGGGTCTTCAGTGGAGGTT 1197
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1139 TCTAAGCAGAGTTCAAGGAAAAGTACTAGCGCCATAAAGGAAGGGTCTTCAGTGGATGTT 1198
Query 1198 AAAGATGAGAAGCCTAGGATTAGTCATAAAAA-GGCTTCACTTTCTAATGGGATAGGGAA 1256
||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1199 AAAGATGAGAAGCCTAGAATTAGTC-TAAAAAAGGCTTCACTTTCTAATGGGATAGGGAA 1257
Query 1257 AGCTACCCGCAAATCAGCTGAGAAGAAGAAAGAGATTGCAGATGCAGTGCAGAAAGAATT 1316
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1258 AGCTACCCGCAAATCCGCTGAGAAGAAGAAAGAGATTGCAGATTCAGTGCAGAAAGAATT 1317
Query 1317 GCCTATTGAAGAGGTTTCAGTTTCTTTAGTTGATGCTCCTGAAGATGAAAAGATGAATCT 1376
| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 1318 GTCTATTGAAGAGGTTTCAGCTTCTGTAGCTGATGCTCCTGAAGATGAAAAGATGAATCT 1377
Query 1377 TATCCCTGTAACAATTTCGAAAGAGTCTGATCTCGATAAAGATGAGAAGTCACTGGTCCT 1436
|||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1378 TATCCCTGAAACAATTTTGAAAGAGTCTGATCTCGATAAAGATGAGAAATCACCGGTCCT 1437
Query 1437 GGATAAGCCGGAGCAAGATGAACTCAGGACTGCCGAGAGAGATGATAAAGCTGAAGAGGA 1496
|||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1438 GGATAACCCGGAGCAAGAGGAACTCAAGACTGCCGAGAGAGATGATAAAGCTGAAGAGGA 1497
Query 1497 ACTCAAGACTGCAGAGAGAGATGATAGTGCTGAAGAGAAAATCCAGGAGCCAGACGCGCA 1556
|||||||||||| ||||||||||| | ||||||||| ||||||| |||||||||| |||
Sbjct 1498 ACTCAAGACTGCCGAGAGAGATGAGAAAGCTGAAGAGGAAATCCAAGAGCCAGACGTGCA 1557
Query 1557 GATAAGCTCTGAGAATGGAAATGTTGCTTCTGAGAACACAAAGCCAAGCGATAGACGAGC 1616
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1558 GATAAGCTCTGAGAATGGAAATGTTGCTTCTGAGAACACAAAGCCAAGCGATAGGCGAGC 1617
Query 1617 TTCATTACCTGCAAAGATTGAAAATCATCATCAAGACGATGGGCTTACACAGAGTGGGAG 1676
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TTCATTACCTGCAAAAATTGAGAATCATCATCAAGACGATGGGCTTACACAGAGTGGGAG 1677
Query 1677 AAAAATCCCAAGCTATATGGCTCCAACTGCATCTGCAAAGGCAAGAATAAGAGGACAAGG 1736
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 AAAAATCCCAAGCTACATGGCTCCAACTGCATCTGCAAAGGCAAGAATAAGAGGACAAGG 1737
Query 1737 GTCTCCGAGGATAGCTCAAGAGAAGCCTGAGAAAAATGGGACAACACGGCGCCACTCTCT 1796
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1738 GTCTCCGAGAATTGCTCAAGAGAAGCCTGAGAAAAACGGGACAACACGGCGCCACTCTCT 1797
Query 1797 TCCTCCTGCAGCCAATGGTAAGCTGAGTACAATGTCTCCAAGAGCTCACAGACTTCTCAT 1856
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1798 TCCTCCTGCAGCCAATGGTAAGCTGAGTACAATGTCTCCAAGGGCTCACAGACTTCTCAT 1857
Query 1857 AGCTTCAGCCAAAGGATCAATGAACAGTGACAGATCTTTTTCATCTTCCAAGGACATTGG 1916
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1858 AGCTTCAGCTAAAGGATCAATGAACAGTGACAGATCTTTTTCGTCTTCCAAGGACATTGG 1917
Query 1917 TGGTAAGAGGTTTAAACCTATAACTA-T-A--CACAAGCCTTTTTGTCAATTTCTTTTAC 1972
||||||||||||||||||||||| || | | ||||||||| || |||| |||||||
Sbjct 1918 TGGTAAGAGGTTTAAACCTATAATTAATTATACACAAGCCTCTT---CAATAACTTTTAC 1974
Query 1973 A-T-T--A-T--CTACATCCTTTTAACAAATTTAGTTCATGTTTATATCAGACAAGTCGA 2025
| | | | | |||||| ||||||||| |||| |||||||||||| |||||||||||||
Sbjct 1975 ACTATCTAGTATCTACATACTTTTAACACATTTCGTTCATGTTTATTTCAGACAAGTCGA 2034
Query 2026 CGAAAGCTGA 2035
||||||||||
Sbjct 2035 CGAAAGCTGA 2044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77742190045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5