BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02800.1 Length=1683 Score E Sequences producing significant alignments: (Bits) Value Ahg484186 jgi|Araly1|484186|fgenesh2_kg.5__178__AT2G02800.1 2381 0.0 Ahg471608 jgi|Araly1|471608|fgenesh2_kg.1__1562__AT1G14370.1 989 0.0 > Ahg484186 jgi|Araly1|484186|fgenesh2_kg.5__178__AT2G02800.1 Length=1469 Score = 2381 bits (1289), Expect = 0.0 Identities = 1413/1472 (96%), Gaps = 11/1472 (1%) Strand=Plus/Plus Query 135 aaaaaaaaGCTCGTTGGCTTTGTTCCTTT-GAATCTGTTGATTGTTTTATCGAGTGAGAA 193 ||| |||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| Sbjct 1 AAAGAAAAGCTCGTTGGCTTTGTT-CTTTAGAATCTGTTGATTG-TTTATCGAGTGAGAA 58 Query 194 ATGGGTAATTGCTTAGATTCATCAGCTAAAGTGGATAGTAGCAGCCACAGTCCTCATGCT 253 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 59 ATGGGTAATTGCTTAGATTCATCAGCTAAAGTGGATAGTAGCAGCCATAGTCCTCATGCT 118 Query 254 AATTCTGCTTCATTGAGCTCAAGAGTTTCTAGCAAGACAAGTCGTTCCACAGTTCCTTCA 313 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 119 AATTCTGCTTCGTTGAGCTCAAGAGTTTCAAGCAAGACAAGTCGTTCCACAGTTCCTTCA 178 Query 314 AGCTTAAGCATAAATTCTTACAGCAGTGTTGAGTCTTTACCTACACCAAGAACAGAAGGA 373 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 179 AGCTTAAGCATAAATTCTTACAGCAGTGTGGAGTCTTTACCTACACCAAGAACAGAAGGA 238 Query 374 GAGATTTTGTCATCACCAAATCTTAAAGCTTTCACCTTTAACGAGCTCAAGAACGCTACG 433 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 GAGATTTTGTCATCACCAAATCTTAAAGCTTTCACCTTTAACGAGCTCAAGAACGCTACT 298 Query 434 AGGAACTTT-CGACCCGATAGTCTTTTAGGTGAAGGAGGTTTTGGCTATGTGTTTAAAGG 492 ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 299 AGGAA-TTTCCGACCCGATAGTCTTTTAGGTGAAGGAGGTTTTGGTTATGTGTTTAAAGG 357 Query 493 GTGGATTGATGGAACTACTTTAACTGCTTCAAAACCGGGTTCTGGAATTGTTGTTGCGGT 552 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct 358 ATGGATTGATGGAACTACTTTAACTGCTTCAAAACCGGGTTCTGGAATCGTTGTCGCTGT 417 Query 553 TAAGAAGCTTAAAACTGAAGGTTATCAAGGTCATAAAGAGTGGTTGACTGAAGTGAACTA 612 ||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 418 TAAGAAGCTTAAAGCTGAAGGTTTTCAAGGTCATAAGGAGTGGTTGACTGAAGTGAACTA 477 Query 613 TCTTGGTCAGCTTAGTCACCCAAATCTCGTCAAACTTGTTGGGTATTGTGTAGAGGGAGA 672 ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || Sbjct 478 TCTTGGTCAGCTTAGTCACCCAAATCTTGTCAAACTAGTTGGGTATTGTGTAGAGGGCGA 537 Query 673 AAACCGGTTACTGGTATACGAGTTCATGCCAAAAGGAAGCTTGGAGAATCATCTTTTTAG 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 AAACCGGTTACTGGTATACGAGTTCATGCCAAAAGGAAGCTTGGAGAATCATCTTTTTAG 597 Query 733 ACGTGGCGCTCAGCCACTTACGTGGGCTATAAGGATGAAAGTTGCAATAGGGGCTGCCAA 792 |||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 598 ACGTGGTGCACAGCCACTTACGTGGGCTATAAGGATGAAAGTTGCAATAGGAGCAGCCAA 657 Query 793 AGGACTTACTTTTCTCCATGATGCGAAATCGCAAGTGATATACAGAGACTTTAAAGCTGC 852 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 658 GGGACTTACTTTTCTCCATGATGCAAAATCGCAAGTGATATACAGAGACTTTAAAGCTGC 717 Query 853 TAACATTCTACTTGATGCGGAATTCAACAGTAAACTTTCAGACTTCGGTCTAGCTAAAGC 912 |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TAACATCCTACTCGACGCGGAATTCAACAGTAAACTTTCAGACTTCGGTCTAGCTAAAGC 777 Query 913 AGGTCCTACCGGTGACAAGACTCATGTGTCCACACAAGTCATGGGTACTCACGGATATGC 972 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 AGGTCCTACCGGTGACAAGACTCATGTGTCCACACAAGTCATGGGTACTCACGGATATGC 837 Query 973 TGCCCCGGAATATGTAGCAACAGGTCGATTAACTGCTAAGAGCGATGTATACAGTTTCGG 1032 ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 838 CGCCCCTGAATATGTAGCAACAGGTCGATTAACAGCTAAGAGCGATGTATACAGTTTCGG 897 Query 1033 TGTGGTACTACTGGAATTACTCTCAGGACGAAGAGCGGTGGACAAATCAAAAGTGGGAAT 1092 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 TGTGGTACTACTGGAATTACTCTCAGGACGAAGAGCGGTGGACAAATCAAAAGTGGGAAT 957 Query 1093 GGAACAGAGTCTAGTGGACTGGGCAACACCGTATCTCGGCGACAAGCGGAAGCTCTTTAG 1152 |||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||| Sbjct 958 GGAACAGAGTCTTGTGGACTGGGCAACACCGTATCTTGGTGACAAGCGAAAGCTCTTTAG 1017 Query 1153 AATAATGGACACGAGATTAGGCGGTCAGTATCCTCAAAAAGGAGCATACACAGCAGCTAG 1212 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1018 AATAATGGACACGAGATTAGGCGGTCAGTATTCTCAAAAAGGAGCATACACAGCAGCTAG 1077 Query 1213 TCTTGCATTGCAATGCTTAAACCCTGACGCAAAACTGAGACCGAAAATGTCGGAAGTTTT 1272 |||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| Sbjct 1078 TCTTGCATTGCAATGCTTAAACCCCGACGCAAAACTCAGACCTAAAATGTCAGAAGTTTT 1137 Query 1273 GGCCAAATTAGATCAGCTTGAATCAACGAAACCTGGAACTGGAGTTGGAAACAGACAAGC 1332 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1138 GGCCAAATTAGATCAGCTTGAATCAACGAAACCTGGAACTGGAATTGGAAACAGACAAGC 1197 Query 1333 ACAGATTGATTCCCCAAGAGGTAGTAATGGATCTATTGTACAGAAATCTCCAAGGAGGTA 1392 ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 1198 TCAGATTGATTCCCCAAGAGGTAGTAATGGATCTGTTGTACAGAAATCTCCGAGGAGGTA 1257 Query 1393 TAGTTATGATCGGCCTCTCTTACACATAACTCCTGGTGCTTCTCCTTTGCCTACTCACAA 1452 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1258 TAGTTATGATCGGCCTCTCTTACACATAACTCCTGGTGCTTCTCCTTTGCCTTCTCACAA 1317 Query 1453 TCACTCTCCTCGTGTAAGATAGGAATCACTGTAATAGTTAT-CTTTTGTCTTTGTCTGTT 1511 ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| Sbjct 1318 TCACTCTCCTCGTGTAAGATAGGAATCACGGTAATAGTTTTTCTTTTGTCTTTGTCTGTT 1377 Query 1512 GTATGCTG-T-T-TGT--AAAATGTGTTGTGTAATGGACCAAAGTTTCATTCTTGGCTCA 1566 |||||||| | | ||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 1378 GTATGCTGCTCTGTGTGTAAAATGTGTTGTGTAACGGACCAAAGTTTCATTCTTGGCTCA 1437 Query 1567 ATTTATAAAATTTGGTTTCAGTATGGTTTGTT 1598 ||||||||||||||||||| ||||||||||| Sbjct 1438 GTTTATAAAATTTGGTTTCAATATGGTTTGTT 1469 > Ahg471608 jgi|Araly1|471608|fgenesh2_kg.1__1562__AT1G14370.1 Length=1747 Score = 989 bits (535), Expect = 0.0 Identities = 1063/1312 (81%), Gaps = 60/1312 (5%) Strand=Plus/Plus Query 191 GAAATGGGTAATTGCTTAGATTCATCAGCTAAAGTGGATAGTAGCAGCCACAGTCCTCAT 250 |||||||||||||| ||||||||||||||||||||||||| ||||| ||| || || ||| Sbjct 275 GAAATGGGTAATTGTTTAGATTCATCAGCTAAAGTGGATAATAGCAACCATAGCCCACAT 334 Query 251 GCTAATTCTGCTTCATT-GAG-CTC-AAGAGTTTCTAGCAAGACAAGTCGTTCCACAGTT 307 |||||||||||||| || | | ||| || |||||| ||||||||||| ||||| || ||| Sbjct 335 GCTAATTCTGCTTC-TTCG-GCCTCGAA-AGTTTCGAGCAAGACAAGCCGTTCAACGGTT 391 Query 308 CCTTCAAGCTTAAGCATAAATTCTTACAG--C----AGT-GTTGA-G-TCTTTACCTACA 358 |||||| | ||||||| || ||||||||| | ||| ||| | | | ||||| || Sbjct 392 CCTTCAGGATTAAGCACAACTTCTTACAGCACAGATAGTAGTTTAGGACCATTACCAACG 451 Query 359 CCAAGAACAGAAGGAGAGAT-TTTGTCATCACCAAATCTT-AAAGCTTTCACCTTT-AAC 415 | || |||||||||||||| || ||||| ||||| ||| |||||||||| |||| ||| Sbjct 452 CTTAGGACAGAAGGAGAGATACTT-TCATCGCCAAA-CTTAAAAGCTTTCA-CTTTCAAC 508 Query 416 GAGCTCAAGAACGCTACGAGGAACTTTCGACCCGATAGTCTTTTAGGTGAAGGAGGTTTT 475 || ||||||||||| || | ||||||||| | |||| |||| |||| ||||||||||| Sbjct 509 GAACTCAAGAACGCAACTAAGAACTTTCGTCAAGATAATCTTCTAGGCGAAGGAGGTTTC 568 Query 476 GGCTATGTGT-TT-AAAGGGTGGATTGATGGAACTA-CTTTAACTGCTTCAAAACCGGGT 532 || | ||||| || ||||| ||||||||| ||| | || | ||||||||| || ||| Sbjct 569 GG-T-TGTGTATTCAAAGGATGGATTGATCAAAC-ATCTCTCACTGCTTCACGCCCTGGT 625 Query 533 TCTGGAATTGTTGTTGCGGTTAAGAAGCTTAAAACTGAAGGTTATCAAGGTCATAAAGAG 592 |||||||| |||||||| |||||| |||||| ||||||||| |||||||||||||||| Sbjct 626 TCTGGAATCGTTGTTGCTGTTAAGCTGCTTAAGCCTGAAGGTTTTCAAGGTCATAAAGAG 685 Query 593 TGGTTGACTGAAGTGAACTATCTTGGTCAGCTTAGTCACCCAAATCTCGTCA-AACTTGT 651 |||||||||||||| |||||||||||||| ||||||||||||||||| || | ||| || Sbjct 686 TGGTTGACTGAAGTAAACTATCTTGGTCAACTTAGTCACCCAAATCTTGT-ATTACTCGT 744 Query 652 TGGGTATTGTGTAGAGGGAGAAAACCGG-TTACTGGTATACGAGTTCATGCCAAAAGGAA 710 ||| || || | || || ||||||||| || || ||||| || |||||||||||||||| Sbjct 745 TGGATACTGCGCGGAAGGCGAAAACCGGCTT-CTTGTATATGAATTCATGCCAAAAGGAA 803 Query 711 GCTTGGAGAATCATCTTTTTAGACGTGGCGCTCAGCCACTTACGTGGGCTATAAGGATGA 770 |||||||||||||||||||||||||||| || || |||||||| ||||| |||||||||| Sbjct 804 GCTTGGAGAATCATCTTTTTAGACGTGGTGCGCAACCACTTACATGGGCGATAAGGATGA 863 Query 771 AAGTTGCAATAGGGGCTGCCAAAGGACTTACTTTTCTCCATGATGCGAAAT-CGCAAGTG 829 |||| ||| |||| || || ||||| || |||||||| ||||| || ||| | |||||| Sbjct 864 AAGTGGCAGTAGGTGCAGCTAAAGGGCTAACTTTTCTTCATGAAGC-AAAGGCACAAGTG 922 Query 830 ATATACAGAGACTTTAAAGCTGCTAACATTCTACTTGATGCGGAATTCAACAG-TAAACT 888 ||||||||||||||||||||||||||||||||||| || || || ||||| | ||| || Sbjct 923 ATATACAGAGACTTTAAAGCTGCTAACATTCTACTCGACGCTGAGTTCAAT-GCTAAGCT 981 Query 889 TTCAGACTTCGG-TCTAGCTAAAGCAGGTCCTACCGGTGACAAGACTCATGTGTCCACAC 947 ||| || ||||| | | || |||||||| ||||| ||||| || || |||||||| ||| Sbjct 982 TTCGGATTTCGGAT-TGGCAAAAGCAGGGCCTACTGGTGATAATACACATGTGTCAACA- 1039 Query 948 AAG-TCATGGGTACTCACGGATATGCTGCCCCGGAATATGTAGCAACAGGTCGATTAACT 1006 ||| |||| |||||||| |||||||| || || |||||||| || |||||| ||||||| Sbjct 1040 AAGGTCATTGGTACTCATGGATATGCAGCACCTGAATATGTTGCCACAGGTAGATTAACC 1099 Query 1007 GCTAAGAGCGATGTATACAGTTTCGGTGTGGTACTACTGGAATTACTCTCAGGACGAAGA 1066 || ||||| ||||| ||||| ||||| || |||||||| ||| || | |||||||| | Sbjct 1100 GCAAAGAGTGATGTGTACAGCTTCGGGGTCGTACTACTAGAACTAATATCAGGACGGCGT 1159 Query 1067 GCGGTGGACAAATCAAAAGTGGGAATGGAACAGAGTCTAGTGGACTGGGCAACACCGTAT 1126 || ||||||| ||||| | ||||| ||| | ||||| |||||||||||||||||||| Sbjct 1160 GCCATGGACAAGTCAAATGGGGGAAACGAATATAGTCTTGTGGACTGGGCAACACCGTAC 1219 Query 1127 CTCGGCGACAAGCGGAAGCTCTTTAGAATAATGGACACGAGATTAGGCGGTCAGTATCCT 1186 || ||||| ||||| ||||| ||| | ||||||||||||| | |||| ||||| ||||| Sbjct 1220 CTTGGCGATAAGCGAAAGCTTTTTCGCATAATGGACACGAAACTAGGGGGTCAATATCCA 1279 Query 1187 CAAAAAGGAGCATACACAGCAGCTAGTCTTGCATTGCAATGCTTAAACCCTGACGCAAAA 1246 ||||| ||||| | |||||| |||| ||||||||||||||||||||| ||||| |||||| Sbjct 1280 CAAAAGGGAGCTTTCACAGCTGCTAATCTTGCATTGCAATGCTTAAATCCTGATGCAAAA 1339 Query 1247 CTGAGACCGAAAATGTCGGAAGTTTTGGCCAAATTAGATCAGCTTGAATCAACGAAACCT 1306 || || ||||||||||| || ||||| | || |||||| ||||| ||||| || | | Sbjct 1340 CTCAGGCCGAAAATGTCAGAGGTTTTAGTCACATTAGAACAGCTAGAATC--CGTTGC-T 1396 Query 1307 GGAAC-TGGAGTTGGAAACAGACAAGCACAGATTGATTCCCCAAGAGGT-AGTAATGGAT 1364 ||| |||| ||||| || || | || || || |||||| | | | || | Sbjct 1397 A-AACCTGGAACC--AAACACACC--CA-A-ATGGAATCTCCAAGATTTCA-TCATTCCT 1448 Query 1365 CTATTGTACAGAAATCTCCAAGG-AGG-TATAGTTATGATCGGCCTCT-CTTACACATAA 1421 || || | ||||||||||| || | | |||||| ||||||||||||| || ||||| | Sbjct 1449 CTGTTATGCAGAAATCTCC--GGTAAGATATAGTCATGATCGGCCTCTGCTG-CACATTA 1505 Query 1422 CTCCTGGTGCTTCTCCTTTGCC-TACTCACAATCACTCTCCTCGTGTAAGAT 1472 |||||||||| || ||||| || | || ||| ||| |||||||||||||||| Sbjct 1506 CTCCTGGTGCATCGCCTTTACCAT-CTTACAGTCAATCTCCTCGTGTAAGAT 1556 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63115535965 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5