BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02800.1
Length=1683
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484186 jgi|Araly1|484186|fgenesh2_kg.5__178__AT2G02800.1 2381 0.0
Ahg471608 jgi|Araly1|471608|fgenesh2_kg.1__1562__AT1G14370.1 989 0.0
> Ahg484186 jgi|Araly1|484186|fgenesh2_kg.5__178__AT2G02800.1
Length=1469
Score = 2381 bits (1289), Expect = 0.0
Identities = 1413/1472 (96%), Gaps = 11/1472 (1%)
Strand=Plus/Plus
Query 135 aaaaaaaaGCTCGTTGGCTTTGTTCCTTT-GAATCTGTTGATTGTTTTATCGAGTGAGAA 193
||| |||||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 1 AAAGAAAAGCTCGTTGGCTTTGTT-CTTTAGAATCTGTTGATTG-TTTATCGAGTGAGAA 58
Query 194 ATGGGTAATTGCTTAGATTCATCAGCTAAAGTGGATAGTAGCAGCCACAGTCCTCATGCT 253
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 59 ATGGGTAATTGCTTAGATTCATCAGCTAAAGTGGATAGTAGCAGCCATAGTCCTCATGCT 118
Query 254 AATTCTGCTTCATTGAGCTCAAGAGTTTCTAGCAAGACAAGTCGTTCCACAGTTCCTTCA 313
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 119 AATTCTGCTTCGTTGAGCTCAAGAGTTTCAAGCAAGACAAGTCGTTCCACAGTTCCTTCA 178
Query 314 AGCTTAAGCATAAATTCTTACAGCAGTGTTGAGTCTTTACCTACACCAAGAACAGAAGGA 373
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 179 AGCTTAAGCATAAATTCTTACAGCAGTGTGGAGTCTTTACCTACACCAAGAACAGAAGGA 238
Query 374 GAGATTTTGTCATCACCAAATCTTAAAGCTTTCACCTTTAACGAGCTCAAGAACGCTACG 433
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GAGATTTTGTCATCACCAAATCTTAAAGCTTTCACCTTTAACGAGCTCAAGAACGCTACT 298
Query 434 AGGAACTTT-CGACCCGATAGTCTTTTAGGTGAAGGAGGTTTTGGCTATGTGTTTAAAGG 492
||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 299 AGGAA-TTTCCGACCCGATAGTCTTTTAGGTGAAGGAGGTTTTGGTTATGTGTTTAAAGG 357
Query 493 GTGGATTGATGGAACTACTTTAACTGCTTCAAAACCGGGTTCTGGAATTGTTGTTGCGGT 552
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 358 ATGGATTGATGGAACTACTTTAACTGCTTCAAAACCGGGTTCTGGAATCGTTGTCGCTGT 417
Query 553 TAAGAAGCTTAAAACTGAAGGTTATCAAGGTCATAAAGAGTGGTTGACTGAAGTGAACTA 612
||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 418 TAAGAAGCTTAAAGCTGAAGGTTTTCAAGGTCATAAGGAGTGGTTGACTGAAGTGAACTA 477
Query 613 TCTTGGTCAGCTTAGTCACCCAAATCTCGTCAAACTTGTTGGGTATTGTGTAGAGGGAGA 672
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 478 TCTTGGTCAGCTTAGTCACCCAAATCTTGTCAAACTAGTTGGGTATTGTGTAGAGGGCGA 537
Query 673 AAACCGGTTACTGGTATACGAGTTCATGCCAAAAGGAAGCTTGGAGAATCATCTTTTTAG 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAACCGGTTACTGGTATACGAGTTCATGCCAAAAGGAAGCTTGGAGAATCATCTTTTTAG 597
Query 733 ACGTGGCGCTCAGCCACTTACGTGGGCTATAAGGATGAAAGTTGCAATAGGGGCTGCCAA 792
|||||| || ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 598 ACGTGGTGCACAGCCACTTACGTGGGCTATAAGGATGAAAGTTGCAATAGGAGCAGCCAA 657
Query 793 AGGACTTACTTTTCTCCATGATGCGAAATCGCAAGTGATATACAGAGACTTTAAAGCTGC 852
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 658 GGGACTTACTTTTCTCCATGATGCAAAATCGCAAGTGATATACAGAGACTTTAAAGCTGC 717
Query 853 TAACATTCTACTTGATGCGGAATTCAACAGTAAACTTTCAGACTTCGGTCTAGCTAAAGC 912
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TAACATCCTACTCGACGCGGAATTCAACAGTAAACTTTCAGACTTCGGTCTAGCTAAAGC 777
Query 913 AGGTCCTACCGGTGACAAGACTCATGTGTCCACACAAGTCATGGGTACTCACGGATATGC 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGGTCCTACCGGTGACAAGACTCATGTGTCCACACAAGTCATGGGTACTCACGGATATGC 837
Query 973 TGCCCCGGAATATGTAGCAACAGGTCGATTAACTGCTAAGAGCGATGTATACAGTTTCGG 1032
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 838 CGCCCCTGAATATGTAGCAACAGGTCGATTAACAGCTAAGAGCGATGTATACAGTTTCGG 897
Query 1033 TGTGGTACTACTGGAATTACTCTCAGGACGAAGAGCGGTGGACAAATCAAAAGTGGGAAT 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGTGGTACTACTGGAATTACTCTCAGGACGAAGAGCGGTGGACAAATCAAAAGTGGGAAT 957
Query 1093 GGAACAGAGTCTAGTGGACTGGGCAACACCGTATCTCGGCGACAAGCGGAAGCTCTTTAG 1152
|||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 958 GGAACAGAGTCTTGTGGACTGGGCAACACCGTATCTTGGTGACAAGCGAAAGCTCTTTAG 1017
Query 1153 AATAATGGACACGAGATTAGGCGGTCAGTATCCTCAAAAAGGAGCATACACAGCAGCTAG 1212
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1018 AATAATGGACACGAGATTAGGCGGTCAGTATTCTCAAAAAGGAGCATACACAGCAGCTAG 1077
Query 1213 TCTTGCATTGCAATGCTTAAACCCTGACGCAAAACTGAGACCGAAAATGTCGGAAGTTTT 1272
|||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct 1078 TCTTGCATTGCAATGCTTAAACCCCGACGCAAAACTCAGACCTAAAATGTCAGAAGTTTT 1137
Query 1273 GGCCAAATTAGATCAGCTTGAATCAACGAAACCTGGAACTGGAGTTGGAAACAGACAAGC 1332
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1138 GGCCAAATTAGATCAGCTTGAATCAACGAAACCTGGAACTGGAATTGGAAACAGACAAGC 1197
Query 1333 ACAGATTGATTCCCCAAGAGGTAGTAATGGATCTATTGTACAGAAATCTCCAAGGAGGTA 1392
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1198 TCAGATTGATTCCCCAAGAGGTAGTAATGGATCTGTTGTACAGAAATCTCCGAGGAGGTA 1257
Query 1393 TAGTTATGATCGGCCTCTCTTACACATAACTCCTGGTGCTTCTCCTTTGCCTACTCACAA 1452
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1258 TAGTTATGATCGGCCTCTCTTACACATAACTCCTGGTGCTTCTCCTTTGCCTTCTCACAA 1317
Query 1453 TCACTCTCCTCGTGTAAGATAGGAATCACTGTAATAGTTAT-CTTTTGTCTTTGTCTGTT 1511
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 1318 TCACTCTCCTCGTGTAAGATAGGAATCACGGTAATAGTTTTTCTTTTGTCTTTGTCTGTT 1377
Query 1512 GTATGCTG-T-T-TGT--AAAATGTGTTGTGTAATGGACCAAAGTTTCATTCTTGGCTCA 1566
|||||||| | | ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1378 GTATGCTGCTCTGTGTGTAAAATGTGTTGTGTAACGGACCAAAGTTTCATTCTTGGCTCA 1437
Query 1567 ATTTATAAAATTTGGTTTCAGTATGGTTTGTT 1598
||||||||||||||||||| |||||||||||
Sbjct 1438 GTTTATAAAATTTGGTTTCAATATGGTTTGTT 1469
> Ahg471608 jgi|Araly1|471608|fgenesh2_kg.1__1562__AT1G14370.1
Length=1747
Score = 989 bits (535), Expect = 0.0
Identities = 1063/1312 (81%), Gaps = 60/1312 (5%)
Strand=Plus/Plus
Query 191 GAAATGGGTAATTGCTTAGATTCATCAGCTAAAGTGGATAGTAGCAGCCACAGTCCTCAT 250
|||||||||||||| ||||||||||||||||||||||||| ||||| ||| || || |||
Sbjct 275 GAAATGGGTAATTGTTTAGATTCATCAGCTAAAGTGGATAATAGCAACCATAGCCCACAT 334
Query 251 GCTAATTCTGCTTCATT-GAG-CTC-AAGAGTTTCTAGCAAGACAAGTCGTTCCACAGTT 307
|||||||||||||| || | | ||| || |||||| ||||||||||| ||||| || |||
Sbjct 335 GCTAATTCTGCTTC-TTCG-GCCTCGAA-AGTTTCGAGCAAGACAAGCCGTTCAACGGTT 391
Query 308 CCTTCAAGCTTAAGCATAAATTCTTACAG--C----AGT-GTTGA-G-TCTTTACCTACA 358
|||||| | ||||||| || ||||||||| | ||| ||| | | | ||||| ||
Sbjct 392 CCTTCAGGATTAAGCACAACTTCTTACAGCACAGATAGTAGTTTAGGACCATTACCAACG 451
Query 359 CCAAGAACAGAAGGAGAGAT-TTTGTCATCACCAAATCTT-AAAGCTTTCACCTTT-AAC 415
| || |||||||||||||| || ||||| ||||| ||| |||||||||| |||| |||
Sbjct 452 CTTAGGACAGAAGGAGAGATACTT-TCATCGCCAAA-CTTAAAAGCTTTCA-CTTTCAAC 508
Query 416 GAGCTCAAGAACGCTACGAGGAACTTTCGACCCGATAGTCTTTTAGGTGAAGGAGGTTTT 475
|| ||||||||||| || | ||||||||| | |||| |||| |||| |||||||||||
Sbjct 509 GAACTCAAGAACGCAACTAAGAACTTTCGTCAAGATAATCTTCTAGGCGAAGGAGGTTTC 568
Query 476 GGCTATGTGT-TT-AAAGGGTGGATTGATGGAACTA-CTTTAACTGCTTCAAAACCGGGT 532
|| | ||||| || ||||| ||||||||| ||| | || | ||||||||| || |||
Sbjct 569 GG-T-TGTGTATTCAAAGGATGGATTGATCAAAC-ATCTCTCACTGCTTCACGCCCTGGT 625
Query 533 TCTGGAATTGTTGTTGCGGTTAAGAAGCTTAAAACTGAAGGTTATCAAGGTCATAAAGAG 592
|||||||| |||||||| |||||| |||||| ||||||||| ||||||||||||||||
Sbjct 626 TCTGGAATCGTTGTTGCTGTTAAGCTGCTTAAGCCTGAAGGTTTTCAAGGTCATAAAGAG 685
Query 593 TGGTTGACTGAAGTGAACTATCTTGGTCAGCTTAGTCACCCAAATCTCGTCA-AACTTGT 651
|||||||||||||| |||||||||||||| ||||||||||||||||| || | ||| ||
Sbjct 686 TGGTTGACTGAAGTAAACTATCTTGGTCAACTTAGTCACCCAAATCTTGT-ATTACTCGT 744
Query 652 TGGGTATTGTGTAGAGGGAGAAAACCGG-TTACTGGTATACGAGTTCATGCCAAAAGGAA 710
||| || || | || || ||||||||| || || ||||| || ||||||||||||||||
Sbjct 745 TGGATACTGCGCGGAAGGCGAAAACCGGCTT-CTTGTATATGAATTCATGCCAAAAGGAA 803
Query 711 GCTTGGAGAATCATCTTTTTAGACGTGGCGCTCAGCCACTTACGTGGGCTATAAGGATGA 770
|||||||||||||||||||||||||||| || || |||||||| ||||| ||||||||||
Sbjct 804 GCTTGGAGAATCATCTTTTTAGACGTGGTGCGCAACCACTTACATGGGCGATAAGGATGA 863
Query 771 AAGTTGCAATAGGGGCTGCCAAAGGACTTACTTTTCTCCATGATGCGAAAT-CGCAAGTG 829
|||| ||| |||| || || ||||| || |||||||| ||||| || ||| | ||||||
Sbjct 864 AAGTGGCAGTAGGTGCAGCTAAAGGGCTAACTTTTCTTCATGAAGC-AAAGGCACAAGTG 922
Query 830 ATATACAGAGACTTTAAAGCTGCTAACATTCTACTTGATGCGGAATTCAACAG-TAAACT 888
||||||||||||||||||||||||||||||||||| || || || ||||| | ||| ||
Sbjct 923 ATATACAGAGACTTTAAAGCTGCTAACATTCTACTCGACGCTGAGTTCAAT-GCTAAGCT 981
Query 889 TTCAGACTTCGG-TCTAGCTAAAGCAGGTCCTACCGGTGACAAGACTCATGTGTCCACAC 947
||| || ||||| | | || |||||||| ||||| ||||| || || |||||||| |||
Sbjct 982 TTCGGATTTCGGAT-TGGCAAAAGCAGGGCCTACTGGTGATAATACACATGTGTCAACA- 1039
Query 948 AAG-TCATGGGTACTCACGGATATGCTGCCCCGGAATATGTAGCAACAGGTCGATTAACT 1006
||| |||| |||||||| |||||||| || || |||||||| || |||||| |||||||
Sbjct 1040 AAGGTCATTGGTACTCATGGATATGCAGCACCTGAATATGTTGCCACAGGTAGATTAACC 1099
Query 1007 GCTAAGAGCGATGTATACAGTTTCGGTGTGGTACTACTGGAATTACTCTCAGGACGAAGA 1066
|| ||||| ||||| ||||| ||||| || |||||||| ||| || | |||||||| |
Sbjct 1100 GCAAAGAGTGATGTGTACAGCTTCGGGGTCGTACTACTAGAACTAATATCAGGACGGCGT 1159
Query 1067 GCGGTGGACAAATCAAAAGTGGGAATGGAACAGAGTCTAGTGGACTGGGCAACACCGTAT 1126
|| ||||||| ||||| | ||||| ||| | ||||| ||||||||||||||||||||
Sbjct 1160 GCCATGGACAAGTCAAATGGGGGAAACGAATATAGTCTTGTGGACTGGGCAACACCGTAC 1219
Query 1127 CTCGGCGACAAGCGGAAGCTCTTTAGAATAATGGACACGAGATTAGGCGGTCAGTATCCT 1186
|| ||||| ||||| ||||| ||| | ||||||||||||| | |||| ||||| |||||
Sbjct 1220 CTTGGCGATAAGCGAAAGCTTTTTCGCATAATGGACACGAAACTAGGGGGTCAATATCCA 1279
Query 1187 CAAAAAGGAGCATACACAGCAGCTAGTCTTGCATTGCAATGCTTAAACCCTGACGCAAAA 1246
||||| ||||| | |||||| |||| ||||||||||||||||||||| ||||| ||||||
Sbjct 1280 CAAAAGGGAGCTTTCACAGCTGCTAATCTTGCATTGCAATGCTTAAATCCTGATGCAAAA 1339
Query 1247 CTGAGACCGAAAATGTCGGAAGTTTTGGCCAAATTAGATCAGCTTGAATCAACGAAACCT 1306
|| || ||||||||||| || ||||| | || |||||| ||||| ||||| || | |
Sbjct 1340 CTCAGGCCGAAAATGTCAGAGGTTTTAGTCACATTAGAACAGCTAGAATC--CGTTGC-T 1396
Query 1307 GGAAC-TGGAGTTGGAAACAGACAAGCACAGATTGATTCCCCAAGAGGT-AGTAATGGAT 1364
||| |||| ||||| || || | || || || |||||| | | | || |
Sbjct 1397 A-AACCTGGAACC--AAACACACC--CA-A-ATGGAATCTCCAAGATTTCA-TCATTCCT 1448
Query 1365 CTATTGTACAGAAATCTCCAAGG-AGG-TATAGTTATGATCGGCCTCT-CTTACACATAA 1421
|| || | ||||||||||| || | | |||||| ||||||||||||| || ||||| |
Sbjct 1449 CTGTTATGCAGAAATCTCC--GGTAAGATATAGTCATGATCGGCCTCTGCTG-CACATTA 1505
Query 1422 CTCCTGGTGCTTCTCCTTTGCC-TACTCACAATCACTCTCCTCGTGTAAGAT 1472
|||||||||| || ||||| || | || ||| ||| ||||||||||||||||
Sbjct 1506 CTCCTGGTGCATCGCCTTTACCAT-CTTACAGTCAATCTCCTCGTGTAAGAT 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63115535965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5