BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02810.1
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484188 jgi|Araly1|484188|fgenesh2_kg.5__180__AT2G02810.1 1786 0.0
Ahg920325 jgi|Araly1|920325|scaffold_101606.1 985 0.0
> Ahg484188 jgi|Araly1|484188|fgenesh2_kg.5__180__AT2G02810.1
Length=1225
Score = 1786 bits (967), Expect = 0.0
Identities = 1147/1232 (93%), Gaps = 19/1232 (2%)
Strand=Plus/Plus
Query 34 TCGGATTCGATCAGTGAAATTCGAATCGAAGCGCCGCCGGAAGAATCATCGCCGGTGT-G 92
|||||||||||||||||||||||||||||| || ||||||| |||||||||||||||| |
Sbjct 1 TCGGATTCGATCAGTGAAATTCGAATCGAAACGGCGCCGGAGGAATCATCGCCGGTGTCG 60
Query 93 GGAGCGTTTCCCGGAGCGGCGATGGAGGTCCATGGCTCCGGATTCCGTCGAATTCTGTTG 152
|| |||||| ||| ||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 61 GG-GCGTTT-CCGTAGCGGCGATGGAGGTTCATGGCTCCGGATTCCGTCGAATGCTGTTG 118
Query 153 TTGGCGTTGTGTATCTCCGGGATCTGGTCCGCCTACATCTACCAAGGCGTTCTTCAAGAG 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTGGCGTTGTGTATCTCCGGGATCTGGTCCGCCTACATCTACCAAGGCGTTCTTCAAGAG 178
Query 213 ACTCTGTCCACGAAGAGATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCATTCTTG 272
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ACTCTGTCCACCAAGATATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCATTCTTG 238
Query 273 AACTTAGCTCAAAGTGTAGTCTGCTTGATCTGGTCTTATATAATGATCAAGCTCTGGTCA 332
||||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 239 AACTTGGCTCAGAGTGTAGTCTGCTTGGTTTGGTCTTATATAATGATCAAGCTCTGGTCA 298
Query 333 AATGCTGGTAACGGTGGAGCACCATGGTGGACGTATTGGAGTGCAGGCATTACTAATACA 392
|| |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 299 AACGCTGGTAATGGTGGAGCACCATGGTGGGCGTATTGGAGTGCCGGCATTACTAATACG 358
Query 393 ATTGGTCCTGCCATGGGAATTGAAGCCTTGAAGTATATCAGTTATCCAGCTCAGGTTTTG 452
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 359 ATTGGTCCTGCCATGGGAATTGAAGCTTTGAAGTATATCAGTTATCCAGCTCAGGTCCTG 418
Query 453 GCAAAATCGTCAAAAATGATTCCAGTTATGCTAATGGGAACTTTAGTTTACGGAATAAGA 512
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 419 GCAAAGTCGTCGAAAATGATTCCAGTTATGCTAATGGGAACTTTGGTTTACGGAATAAGA 478
Query 513 TACACTTTCCCTGAATACATGTGCACCTTTCTTGTCGCTGGAGGAGTATCCATCTTTGCT 572
||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 479 TACACCTTCCCTGAATACATTTGCACCTTTCTTGTCGCGGGAGGAGTATCTTTCTTTGCT 538
Query 573 CTTCTTAAGACAAGCTCTAAGACAATTAGCAAGCTAGCACATCCAAATGCTCCCCTCGGT 632
|||||||||||||| || |||||||||||||||||||||||||| ||||| ||| | ||
Sbjct 539 CTTCTTAAGACAAGTTCAAAGACAATTAGCAAGCTAGCACATCCCAATGCACCCTTAGGC 598
Query 633 TACGCACTTTG-TTCCTTAAACCTCGCCTTTGACGGATTCACAAATGCCACACAAGACTC 691
||||||||||| || ||||||||| |||||||||||||||||||| || || ||||||||
Sbjct 599 TACGCACTTTGCTT-CTTAAACCTTGCCTTTGACGGATTCACAAACGCTACCCAAGACTC 657
Query 692 CATTGCCTCAAGGTACCCGAAAACCGAAGCGTGGGACATAATGCTGGGAATGAACTTATG 751
||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 658 TATTGCCTCAAGATACCCAAAAACCGAAGCGTGGGATATAATGCTCGGAATGAACTTATG 717
Query 752 GGGCACAATATACAACATGATCTACATGTTTGGCTTGCCACAAGGGATAGGATTCAAAGC 811
||| ||||||||||||||||| || |||||||| |||||||||||||| |||||| ||||
Sbjct 718 GGGAACAATATACAACATGATATATATGTTTGGATTGCCACAAGGGATTGGATTCGAAGC 777
Query 812 AATTCAGTTCTGTAAGCTACACCCGGAAGCGGCATGGGACATTCTAAAGTATTGTATATG 871
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 778 AATTCAGTTCTGTAAGCTACACCCGGAAGCTGCATGGGACATTCTAAAGTATTGTCTATG 837
Query 872 CGGTGCCGTGGGACAAAACTTCATCTTCATGACAATAAGTAACTTCGGGTCACTAGCTAA 931
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 838 TGGTGCCGTGGGACAAAACTTCATCTTTATGACCATAAGTAACTTCGGGTCACTAGCTAA 897
Query 932 CACGACCATAACCACGACCAGGAAGTTTGTTAGCATTGTTGTATCATCAGTAATGAGCGG 991
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 898 CACGACCATAACCACGACCAGGAAGTTTGTTAGCATAGTTGTATCATCAGTAATGAGCGG 957
Query 992 AAATCCATTGTCGTTGAAGCAATGGGGATGTGTTTCGATGGTCTTTGGTGGTTTGGCATA 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 958 AAATCCATTGTCGTTGAAGCAATGGGGATGTGTTTCGATGGTCTTTGGTGGTTTGTCATA 1017
Query 1052 TCAAATTTATCTTAAATGGAAGAAATTGCAGAGAGTGGAGAAGAAGAAGCAAAAGAGTTG 1111
||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1018 TCAGATTTATCTTAAATGGAGGAAAATGCAGAGAGTGGAGAAGAAGAAGCAAAAGAGTTG 1077
Query 1112 AAGTTTTTCCCTCATATCTCTAAATTACGTATCAGTTATTCTTAGTTTATTTATGTCACT 1171
|||||||||||||||||| ||||||||| | ||||||||| ||||||||| ||||||
Sbjct 1078 AAGTTTTTCCCTCATATCACTAAATTACTTTTCAGTTATTGTTAGTTTAT----GTCACT 1133
Query 1172 AGTCAATACAAA--GA-AA-CTCAAACCAGATTAGTTAACTGTATAAGTAACATTACTAA 1227
|||||||||||| || || |||||||||||||||||||||||| |||||||||||| ||
Sbjct 1134 AGTCAATACAAATAGAGAATCTCAAACCAGATTAGTTAACTGTAAAAGTAACATTACCAA 1193
Query 1228 T-C-A--C--TAAAATATATGATTTGAATTTT 1253
| | | | ||||||||||||||||||||||
Sbjct 1194 TACTAATCAGTAAAATATATGATTTGAATTTT 1225
> Ahg920325 jgi|Araly1|920325|scaffold_101606.1
Length=1036
Score = 985 bits (533), Expect = 0.0
Identities = 849/1002 (85%), Gaps = 20/1002 (2%)
Strand=Plus/Plus
Query 108 GCGGCGATGG-AGGTCCATGGCTCCGGATTCCGTCGAATTCTGTTGTTGGCGTTGTGTAT 166
|||||||||| || | || || ||||| ||||| ||| ||||||| ||| |||| ||| |
Sbjct 15 GCGGCGATGGAAGCT-CACGGTTCCGGTTTCCGGCGAGTTCTGTTATTGTCGTTCTGTGT 73
Query 167 CTCCGGGATCTGGTCCGCCTACATCTACCAAGGCGTTCTTCAAGAGACTCTGTCCACGAA 226
| ||||||||||| |||| ||||| ||||||||||||||||||||||| ||||| || ||
Sbjct 74 CGCCGGGATCTGGGCCGCTTACATTTACCAAGGCGTTCTTCAAGAGACCCTGTCGACAAA 133
Query 227 GAGATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCA-TTCTTGAACTTAGCTCA-A 284
|| ||||||| ||||| |||||| ||||||||||||||| ||| |||| || ||||| |
Sbjct 134 GAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATTTC-TGAATTTGGCTCAGA 192
Query 285 AGTGTAGTCTGCTTGATCTGGTCTTATATAATGATCAAGCTCTGGTCAAATGCTGGTAAC 344
| |||| |||||||| | ||||| ||||||||||| ||||||||||| |||| ||| |
Sbjct 193 A-TGTAATCTGCTTGGTTTGGTCATATATAATGATTAAGCTCTGGTCCAATGGAGGT-TC 250
Query 345 -GGTGGAGCACCATGGTGGACGTATTGGAGTGCAGGCATTACTAATACAATTGGTCCTGC 403
|||||||| ||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct 251 TGGTGGAGCCCCATGGTGGACATACTGGAGTGCTGGTATTACTAATACAATTGGTCCTGC 310
Query 404 CATGGGAATTGAAGCCTTGAAGTATATCAGTTATCCAGCTCAGGTT-TTGGCAAAATCGT 462
|||||| |||||||| |||||||| || ||||| ||||||||||| ||| ||||||| |
Sbjct 311 CATGGGCATTGAAGCTTTGAAGTACATTAGTTACCCAGCTCAGGTCCTTG-CAAAATCTT 369
Query 463 CAAAAATGATTCCAGTTATGCTAATGGGAACTTTAGTTTACGGAATAAGATACACTTTCC 522
| |||||||||||||||||||| ||||| | |||||||| || |||||||||||||| |
Sbjct 370 CCAAAATGATTCCAGTTATGCTGATGGGCTCCTTAGTTTATGGCATAAGATACACTTTGC 429
Query 523 CTGAATA-CATGTGCACCTTTCTTGTCGCTGGAGGAGTATCCATCTTTGCTCTTCTTAAG 581
|||| || | | |||||||||||||| || ||||| ||||| || ||||| |||||||||
Sbjct 430 CTGAGTATCTT-TGCACCTTTCTTGTTGCGGGAGGTGTATCTATGTTTGCCCTTCTTAAG 488
Query 582 ACAAGCTCTAAGACAATTAGCAAGCTAGCACATCCAAATGCTCCCCTCGGTTACGCACTT 641
||||||||||| || || ||||||||||||||||| ||||| ||||| || || | |||
Sbjct 489 ACAAGCTCTAAAACGATCAGCAAGCTAGCACATCCCAATGCACCCCTTGGATATGGGCTT 548
Query 642 TG-TTCCTTAAACCTCGCCTTTGACGGATTCACAAATGCCACACAAGACTCCATTGCCTC 700
|| ||| ||||||||||||||||| ||||||||||||||||| || || |||||| || |
Sbjct 549 TGCTTC-TTAAACCTCGCCTTTGATGGATTCACAAATGCCACCCAGGATTCCATTACCGC 607
Query 701 AAGGTACCCGAAAACCGAA-GCGTGGGACATAATGCTGGGAATGAA-CTTATGGGGCACA 758
||||||||| ||||| || || ||||||||||||||||||||||| || ||||| ||
Sbjct 608 AAGGTACCCAAAAACT-AATGCATGGGACATAATGCTGGGAATGAATCTG-TGGGGAACC 665
Query 759 ATATACAACATGATCTACATGTTTGGCTTGCCACAAGGGATAGGATTCAAAGCAATTCAG 818
|||||||||||| ||||||||||||| |||||||| |||| |||||| |||| | |||
Sbjct 666 ATATACAACATGGTCTACATGTTTGGATTGCCACATGGGAGCGGATTCGAAGCTGTGCAG 725
Query 819 TTCTGTAAGCTACACCCGGAAGCGGCATGGGACATTCTAAAGTATTGTATATGCGGTGCC 878
||||| |||| |||||| || || |||||||||||||||| ||| ||| ||||||||||
Sbjct 726 TTCTGCAAGCAACACCCTGAGGCAGCATGGGACATTCTAATGTACTGTTTATGCGGTGCA 785
Query 879 GTGGGACAAAACTTCATCTTCATGACAATAAGTA-ACTTCGGGTCACTAGCTAACACGAC 937
||||| ||||||||||||||| |||||||||| | | |||||||| ||||||||||||||
Sbjct 786 GTGGGCCAAAACTTCATCTTCTTGACAATAAGCAGA-TTCGGGTCTCTAGCTAACACGAC 844
Query 938 CATAACCACGACCAGGAAGTTTGTTAGCATTGTTGTATCATCAGTAATGAGCGGAAATCC 997
||||||||| ||| | |||||||| ||||| || || || ||||| ||||||| |||||
Sbjct 845 CATAACCACAACCCGTAAGTTTGTAAGCATCGTGGTGTCTTCAGTTCTGAGCGGGAATCC 904
Query 998 ATTGTCGTTGAAGCAATGGGGATGTGTTTCGATGGTCTTTGGTGGTTTGGCATATCAAAT 1057
||| |||| || |||||||||||||| |||||||| |||||||| ||| | || |||||
Sbjct 905 ATTATCGTCCAAACAATGGGGATGTGTGTCGATGGTGTTTGGTGGATTGTCTTACCAAAT 964
Query 1058 TTATCTTAAATGGAAGAAATTGCAGAGAGTGGAGAAGAAGAA 1099
||| || ||||||| ||| |||||||| || ||||||||||
Sbjct 965 TTACCTGAAATGGAGGAAGCTGCAGAGAATGCAGAAGAAGAA 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47043679578
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5