BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02820.2
Length=2066
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484189 jgi|Araly1|484189|fgenesh2_kg.5__181__AT2G02820.2 2872 0.0
Ahg471607 jgi|Araly1|471607|fgenesh2_kg.1__1561__AT1G14350.1 758 0.0
> Ahg484189 jgi|Araly1|484189|fgenesh2_kg.5__181__AT2G02820.2
Length=2032
Score = 2872 bits (1555), Expect = 0.0
Identities = 1908/2068 (92%), Gaps = 65/2068 (3%)
Strand=Plus/Plus
Query 14 AAGAATTTTTTACAGACgagagagcgtcagagagagagaA-AGGCCAAAACTT-TTTAAT 71
||||| ||||||||||| |||||||||||||||||| || || || |||||| ||||||
Sbjct 1 AAGAAATTTTTACAGAC--GAGAGCGTCAGAGAGAGA-AAGAGACC-AAACTTCTTTAAT 56
Query 72 GGAAGAGACAACTAAGCAGAACAACATgaagaagaagaagaagaTTCTTCTTCATTCCGA 131
|||||||||||| |||||| || | |||||||||||||| |||||| || |||||||
Sbjct 57 GGAAGAGACAACGAAGCAG-AC--C---AAGAAGAAGAAGAAAATTCTTGTTAATTCCGA 110
Query 132 TGATTCCAAGAAGAAGGAGCGTCATATTGTTACTTGGTCTCCTGAGGAGGATGATATACT 191
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 111 TGATTCCAAGAAGAAGGAGCGTCATATTGTTACTTGGTCTCCAGAGGAAGATGATATACT 170
Query 192 AAGGAAGCAAATCAGTTTACAGGGAACTGAAAATTGGGCGATCATTGCATCCAAGTTTAA 251
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 171 AAGGAAGCAAATCAGTTTACTTGGAACTGAAAATTGGGCGATCATTGCATCCAAGTTTAC 230
Query 252 TGATAAGAGCACAAGGCAGTGTAGAAGAAGATGGTATACATACTTGAACTCTGATTTCAA 311
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 231 TGATAAGAGCACAAGGCAGTGTCGAAGAAGATGGTATACATACTTAAACTCTGATTTCAA 290
Query 312 GAGAGGAGGTTGGTCCCCTGAAGAAGATACACTTTTGTGTGAGGCACAGAGATTGTTTGG 371
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 291 GAGAGGAGGTTGGTCCCCTGAAGAAGATACACTGTTGTGTGAGGCACAGAGATTGTTTGG 350
Query 372 GAATAGGTGGACTGAGATAGCAAAAGTGGTCTCAGGAAGAACGGATAATGCTGTGAAGAA 431
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GAACAGGTGGACTGAGATAGCAAAAGTGGTCTCAGGAAGAACGGATAATGCTGTGAAGAA 410
Query 432 CAGGTTTACTACACTGTGCAAGAAGAGGGCTAAGCATGAAGCTATGGCGAAAGAGAACAG 491
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 411 CAGGTTTACTACACTGTGCAAGAAGAGGGCTAAGCATGAAGCCATGGCGAAAGAGAACAG 470
Query 492 GATTGCTTGTTGTGTTAACTCAGACAACAAGAGACTGTTGTTCCCAGATGGTATTAGTAC 551
||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 471 GATTGCTTGTTGTGTGAACTCAAACAACAAGAGATTGTTGTTCCCAGATGGTATTAGTAC 530
Query 552 ACCGCTAAAAGCCGAAAGTGAATCTCCTCTTACTAAGAAAATGAGGAGAAGTCATATTCC 611
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 ACCTCGAAAAGCCGAAAGTGAATCTCCTCTTACTAAGAAAATGAGGAGAAGTCATATTCC 590
Query 612 AAATCTTACAGAGATTAAGAGCTATGGGGATAGATCACATATAAAGGTTGAATCGACTAT 671
| ||||||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct 591 AGATCTTACAGAGATCAAGAGCTATGGAGATAGATCACATTTAAAGGTTGAATCGGCTAT 650
Query 672 GAATCAACAGAGAAGACATCCATTTTCTGTAGTAGCCCACAATGCCACAAGTAGTGATGG 731
|| ||||||||| |||| ||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 651 GACTCAACAGAGTAGACCTCCATTTTCGGTAGTAGCCCACAATGCCACAGGTATTGATGG 710
Query 732 TA-CAGAGGAGCAGAAACAAATAGGCAATGTGAAAGAGAGTGACGGTGAGGATAAAAGTA 790
| || | ||||| ||||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 711 CACCA-AAGAGCAAAAACAAACAGGCAATGCAAAAGAGAGTGACGGTGAGGATAAAGGTA 769
Query 791 ACCAAGAGGTGTTTCTTAAGAAGGATGATTCAAAGGTGACAGCTTTGATGCAACAAGCTG 850
||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 770 ACCAAGAGGCATTTCTTAAGAAGGATGATCCAAAGGTGACAGCTTTGAAGCAACAAGCTG 829
Query 851 AACTTCTCAGTTCATTGGCCCAGAAAGTTAATGCAGACAACACAGACCAAAGCATGGAGA 910
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 830 AGCTTCTCAGTTCATTGGCCCAGAAAGTTAATGCAGACAACACAGATCAAAGCATGGAGA 889
Query 911 ATGCCTGGAAGGTTCTACAGGATTTCTTGAATAAGAGCAAAGAAAATGATCTATTTAGAT 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 890 ATGCCTGGAAGGTTCTACAGGATTTCTTGAATAAGAGCAAAGAAAATGATCTATTCAGAT 949
Query 971 ATGGAATCCCAGATATTGATTTCCAACTCGATGAATTTAAAGATCTTGTTGAGGACTTGA 1030
|||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 950 ATGGAATCCCAGATATCGATTTCCAACTCGATGAATTTAAAGATCTCGATGAGGACTTGA 1009
Query 1031 GGAGTAGTAATGAAGATAGTCAATCATCTTGGAGGCAACCTGATCTCCATGATTCACCAG 1090
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GGATTAATAATGAAGATAGTCAATCATCTTGGAGGCAACCTGATCTCCATGATTCACCAG 1069
Query 1091 CAAGCTCTGAATATAGCTCAGGATCAGGATCAGGATCAACCATAATGACGCATCCTTCTG 1150
|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||
Sbjct 1070 CAAGCTCTGAATATAG--C----TCAGGATCAGGATCAACCATAATGCCGCATCCTTCTG 1123
Query 1151 GTGATAAAACCCAACAACTTATGTCTGATACTCAGACAACATCACATCAGCAAAATGGTG 1210
|||||||||||||||||| |||||||||||||||||||||| || | ||||||| ||
Sbjct 1124 GTGATAAAACCCAACAACCCATGTCTGATACTCAGACAACATTGCAGAAACAAAATGATG 1183
Query 1211 GGGAGTTACTACAAGATAATGGGATTGTGTCTGATGCAACTGTGGAACAAGTGGGTTTAC 1270
|||| ||||||| |||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 1184 GGGATTTACTACTAGATAAAGGGATTGTGTCTGATACAACTGTGGAACAAGTAAATTTAC 1243
Query 1271 TCTCAAC-TGGTCATGATGTGTTAAAGAACTCTAATGAGACTGTGCCTATCCCGGGTGAA 1329
|| || | | |||| || || |||||||| | ||||||| |||||| || ||||||||
Sbjct 1244 TCACACCAT-GTCAGGAAGTCCTAAAGAACCCAAATGAGATTGTGCCCATGCCGGGTGAC 1302
Query 1330 GAAGAGTTTAACTCGCCTGTTCAAGTCACTCCATTGTTCAGATCTCTAGCAGCAGGCATC 1389
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 GAAGAGTTTAACTCACCTGTTCAAGTCACTCCATTGTTCAGATCTCTAGCAGCAGGCATC 1362
Query 1390 CCAAGCCCACAATTCTCTGAAAGTGAGAGGAACTTTCTGCTAAAAACACTTGGTGTCGAG 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 CCAAGCCCACAATTCTCTGAAAGTGAGAGGAACTTTCTGCTAAAAACACTTGGTGTCGAG 1422
Query 1450 TCCCCATCTCCATATCCAAGTGCTAATCCTTCACAACCACCTCCTTGCAAAAGAGTCCTT 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 TCCCCATCTCCATATCCAAGTGCTAATCCTTCACAACCACCTCCTTGCAAAAGAGTCCTT 1482
Query 1510 CTCGATAGCTTGTAAACCAGACCAAACCAAGCTCTCTAAACCaaaaaaaaaCGTCCCAAA 1569
||||||||||||||||||| | | | ||||||||||||||||| | ||| ||
Sbjct 1483 CTCGATAGCTTGTAAACCA-A--A--C-----TCTCTAAACCAAAAAAACT-GCCCCTAA 1531
Query 1570 AACCTCGGTTATGTCCTCATGGAGGTGGGCATAACCTGCATTTCTTCCCTCTTTTTGCTT 1629
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1532 A-CCGCGGTTATGTCCTCATGGAGGTGGACATAACCTGCATTTCTTCCCTCTTTTTGCTT 1590
Query 1630 AGATTTTCTCCATAGGTTTGCAGCCATATCGGCCTGAAAAGTTTTAGTGAAGCGGGCGTG 1689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 AGATTTTCTCCATAGGTTTGCAGCCATATCGGCCTGAAAAGTTTTAGTGAAGCGGGCGTG 1650
Query 1690 CCATGATCTGCATTTTTT-CCT-CC-C--T---C-TA-----GAATCTAGAATGTTAAAG 1735
|||||||||||||||||| ||| || | | | || ||||||||||||||||||
Sbjct 1651 CCATGATCTGCATTTTTTTCCTTCCTCAGTGTTCATAATCTAGAATCTAGAATGTTAAAG 1710
Query 1736 GTAACATTTCTAAAGTCTAGACCCATCTCAGAAGCTGAGTTTCTCTCTCAGATACTCAGG 1795
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 1711 GTAACATTTCTAAAGTCTAGACCCATCTTATAAACTGAGTTTCTCTCTCAGATACTCAGG 1770
Query 1796 ATTCTAA--TCTTATCCTCACTCATTAGGAGAGTTTTCTTTCCATCATCATACTCAAAAG 1853
|||| || |||| | ||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1771 ATTCCAAAATCTT-TGCTCACTCATTAGGAGAGTTTTCTTTTCATCATCATACTTAAAAG 1829
Query 1854 CCATTCCATAAAAAGGGCTAAAAAA--GTATGAGTTTTTTCTTCCATTCATGATTTGTGT 1911
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1830 CCATTTCATAAAAAGGGCTAAAAAAAAGTATGAGTTTTTTCTTCCATTCATGATTTGTGT 1889
Query 1912 GTCT-AAGAAAAATTCTTTCGTTTGTCT---TC---AAGGGTCAGACCCAGATACATAAT 1964
|||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1890 GTCTTAAGAAAAATTCTTTCGTTTGTCTCCCTCTTCAAGGGTCAGACCCAGATACATAAT 1949
Query 1965 CTTGGGTTTGTCTCCCCCACCCATGAATTCTTGATTTGTTGTTTTCTTGATTCTCTGTAC 2024
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1950 CTTGGGTT-GTCTCCCCCA----TGAATTCTTGATTTGTTGTTTTCTTGATTCTCTGTAC 2004
Query 2025 AGAACCTATATTCTTACATaaaaaaaaa 2052
|||||||||||| |||||||||||||||
Sbjct 2005 AGAACCTATATTATTACATAAAAAAAAA 2032
> Ahg471607 jgi|Araly1|471607|fgenesh2_kg.1__1561__AT1G14350.1
Length=1941
Score = 758 bits (410), Expect = 0.0
Identities = 835/1030 (81%), Gaps = 69/1030 (7%)
Strand=Plus/Plus
Query 99 gaagaagaagaagaagaTTCTT--CTTCATTCCGATGATTCCAAGAAGAAGGAGCGTCAT 156
|||||| |||||||||| | || | || || | ||||||||||| || |||||||||
Sbjct 162 GAAGAAAAAGAAGAAGAATATTAACAACA-ACC-ACGATTCCAAGAAAAAAGAGCGTCAT 219
Query 157 ATTGTTACTTGGTCTCCTGAGGAGGATGATATACTAAG-GAAGCAAATCAGTTTACAGGG 215
|||||||||||||| | ||||| |||| ||||||||| ||| ||||| | | ||| ||
Sbjct 220 ATTGTTACTTGGTCACAAGAGGAAGATGTTATACTAAGAGAA-CAAATTACTAAACATGG 278
Query 216 AACTGAAAATTGGGCGATCATTGCATCCAAGTTTAATGATAAGAGCACAAGGCAGTGTAG 275
||||||||||||||||||||||||||| ||||| || ||||| |||||||| || || ||
Sbjct 279 AACTGAAAATTGGGCGATCATTGCATCAAAGTTCAAAGATAAAAGCACAAGACAATGCAG 338
Query 276 AAGAAGATGGTATACATACTTGAACTCTGATTTCAAGAGAGGAGGTTGGTCCCCTGAAGA 335
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 339 AAGAAGATGGTATACATACTTAAACTCTGATTTCAAAAGAGGAGGTTGGTCCCCTGAAGA 398
Query 336 AGATACACTTTTGTGTGAGGCACAGAGA-TTGTTTGGGAATAGGTGGACTGAGATAGCAA 394
||||| ||||||||||||||||| ||| || ||||||||||| ||||||||||||||||
Sbjct 399 AGATATGCTTTTGTGTGAGGCACAAAGAGTT-TTTGGGAATAGATGGACTGAGATAGCAA 457
Query 395 AAGTGGTCTCAGGAAGAACGGATAATGCTGTGAAGAACAGGTTTACTACACTGTGCAAGA 454
| ||||| ||||| ||||| |||||||||||||||||||||||||| ||||| || ||||
Sbjct 458 AGGTGGTTTCAGGCAGAACTGATAATGCTGTGAAGAACAGGTTTACAACACTTTGTAAGA 517
Query 455 AGAGGGCTAAGCATGAAGCTATG--G-CGAAAGAGAACAGGATTGCTTGTTGTGTTAACT 511
|||| || ||||||||||||||| | | |||||||||| | | | |||
Sbjct 518 AGAGAGCCAAGCATGAAGCTATGATGACTAAAGAGAACA--ACT-CA---------AAC- 564
Query 512 CAGACAACAAGAGACTGTTGTTCCCAGATGGTATTAGTACACCGCTAAAAGCCGA-AAGT 570
| |||| |||| | |||||||| ||| ||||| |||||||||| |||| |||| || |
Sbjct 565 -A-ACAA-AAGA-A-TGTTGTTCTTAGACGGTATCAGTACACCGCGAAAATCCGAGAA-T 618
Query 571 GAATCTCCTCTTACTAAGAAAATGAGGAGAAGTCATATTCCAAATCTTACAGAGATTAAG 630
||| ||||| || |||||||| ||| ||||||||| |||| | |||| ||||| ||
Sbjct 619 GAAGCTCCTATTGCTAAGAAATTGAAGAGAAGTCAGATTCTAGATCTCACAGAAAT---- 674
Query 631 AGCTATGGGGATAGATCACATATAAAGGTTGAATCGACTATGAATCAACAGAGAAGA-CA 689
| | | || | | || ||||| ||| || | | ||||| |||| |||| |
Sbjct 675 --C-A-G----TA-A-CT-ATGGAAAGGCTGAGTCTTGTGTCAATCAGCAGATAAGATC- 722
Query 690 TCCATTTTCTGTAGTAGCCC-ACAATGCCACAAGTAGTGATGG-TACAGAGGAGCAGAAA 747
||||||||| ||| |||| | | |||||||| ||| |||| | | || || |||||
Sbjct 723 TCCATTTTCGGTATTAGCGCGA-AATGCCACGGGTATTGATAGCTTG-GATGATCAGAAT 780
Query 748 CAAATAGGCAATGTGAAAGAGAGTGACGGTGAGGATAAAAGTAACCAAGAGGTGTTTCTT 807
|||| | |||| ||||| |||||||| ||||| | | || ||||||||
Sbjct 781 CAAACAAGCAAGGTGAATGAGAGTGATGGTGAAG------G-------GA--TGTTTCTT 825
Query 808 AAGAAGGATGATTCAAAGGTGACAGCTTTGATGCAACAAGCTGAACTTCTCAGTTCATTG 867
|||||||||||| |||| ||||||||||||||||| |||||||||||| | || || |||
Sbjct 826 AAGAAGGATGATCCAAAAGTGACAGCTTTGATGCAGCAAGCTGAACTTTTAAGCTCCTTG 885
Query 868 GCCCAGAAAGTTAATGCAGACAACACAGACCAAAGCATGGAGAATGCCTGGAAGGTTCTA 927
|| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 886 GCGCAGAAAGTTAATGCAGACAACACAGAACAAAGCATGGAGAATGCTTGGAAGGTTCTT 945
Query 928 CAGGATTTCTTGAATAAGAG-CAAAGAAAATGATCTATTTAGATATGGAATCCCAGATAT 986
||||||||||||||||| || ||| || |||||| |||| ||||||||| | || |||||
Sbjct 946 CAGGATTTCTTGAATAA-AGGCAAGGAGAATGATTTATTCAGATATGGATTACCTGATAT 1004
Query 987 TGATTTCCAACTCGATGAATTTAAAGATCTTGTTGAGGACTTGAGGAGTAGTAATGAAGA 1046
||||| || |||| ||||||||||| ||| ||||||| ||||||||| || |||||||
Sbjct 1005 CGATTTTAAAATCGAGGAATTTAAAGACCTTATTGAGGATTTGAGGAGTGGTTATGAAGA 1064
Query 1047 TAGTCAATCATCTTGGAGGCAACCTGATCTCCATGATTCACCAGCAAGCTCTGAATATAG 1106
| ||| |||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 1065 CAATCAGCCATCTTGGAGGCAACCTGATCTCCATGACTCACCAGCTAGCTCTGAGTATAG 1124
Query 1107 CTCAGGATCA 1116
|||||||||
Sbjct 1125 TTCAGGATCA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77704099800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5