BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G02850.1

Length=708
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg896246 jgi|Araly1|896246|Al_scaffold_0005_212                     638    0.0  


> Ahg896246 jgi|Araly1|896246|Al_scaffold_0005_212
Length=390

 Score =  638 bits (345),  Expect = 0.0
 Identities = 376/391 (96%), Gaps = 2/391 (1%)
 Strand=Plus/Plus

Query  93   ATGGCCAAGGGAAGAGGCAGTGCATCATGGTCGGCTCGAGCCATAGTGACTCTCATGGCT  152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1    ATGGCCAAGGGAAGAGGCAGTGCATCATGGTCGGCTCGAGCCATAGTGACTCTTATGGCT  60

Query  153  GTGTCAGTGTTGTTGCTTCAAGCTGACTACGTTCAAGCTGCAACGTACACGGTCGGTGAC  212
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  61   GTGTCAGTGTTGTTGCTTCAAGCTGACTACGTTCAAGCTGCAACTTACACGGTCGGAGAC  120

Query  213  TCTGGTATCTGGACCTTTAACGCTGTGGGTTGGCCTAAAGGCAAACACTTTAGAGCCGGC  272
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  TCTGGTGTCTGGACCTTTAACGCTGTGGGTTGGCCTAAAGGCAAACACTTTAGAGCCGGT  180

Query  273  GACGTTCTTGTGTTTAACTATAATCCGAGGATGCACAACGTAGTGAAGGTAGATAGCGGA  332
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  181  GACGTTCTTGTGTTTAACTATAATCCGAGGATGCACAACGTAGTGAAGGTAGATAGTGGA  240

Query  333  AGTTACAACAACTGCAAAACACCGACAGGGGC-AAAACCTTACACTTCAGGCAAAGATCG  391
            ||||||||||||||| |||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct  241  AGTTACAACAACTGCCAAACACCGGCAGGGGCGAAAAC-TTACACTTCAGGCAAAGATCG  299

Query  392  TATAACTTTGTCTAAAGGACAAAACTTTTTCATCTGCAATTTTCCAAACCATTGCGAAAG  451
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| 
Sbjct  300  TATAACTTTGTCTAAAGGACAAAACTTCTTCATCTGCAATTTTCCAAACCATTGTGAAAA  359

Query  452  CGATATGAAAATCGCAGTCACCGCGGTTTGA  482
             | ||||||||||||||||||||||||||||
Sbjct  360  TGCTATGAAAATCGCAGTCACCGCGGTTTGA  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26037952311


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5