BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02860.1
Length=2138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484195 jgi|Araly1|484195|fgenesh2_kg.5__187__AT2G02860.1 3234 0.0
> Ahg484195 jgi|Araly1|484195|fgenesh2_kg.5__187__AT2G02860.1
Length=2136
Score = 3234 bits (1751), Expect = 0.0
Identities = 2019/2146 (94%), Gaps = 27/2146 (1%)
Strand=Plus/Plus
Query 9 aaaaTCGATTTCATCAAA-ATATTCACCCGCCCGAATTTGACTCTCCGATCATCGTCTCC 67
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2 AAAATCGATTTCATCAAACATATTCACGCGCCCGAATTTGACTCTCCGATCATCGTCTCC 61
Query 68 GAATCTAGATCGACGAGATCAAAACCCTAGAAATCTAAATCGGAATGAGAAATT-GATTT 126
|||||||||||||||||| ||||||||| |||| |||||||||||||||||||| || ||
Sbjct 62 GAATCTAGATCGACGAGAACAAAACCCTCGAAACCTAAATCGGAATGAGAAATTAGA-TT 120
Query 127 TGATACGAATTAGGGATCTGTGTGTTGAGGACGATGAGTGACTCGGTGTCGATCTCGGTT 186
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGATACGAATTAGGGATC--TGTGTTGAGGACGATGAGTGACTCGGTGTCGATCTCGGTT 178
Query 187 CCGTATAGGAATTTGAGGAAGGAAATTGAACTTGAGACGGTCACCAAGCATCGTCAAAAC 246
||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||| |
Sbjct 179 CCGTATAGGAATTTGAGGAAGGAGATTGAACTTGAGACGGTGACGAAGCATCATCAAGAT 238
Query 247 GAATCTGGTTCTTCGTCGTTCTCTGAATCTGCTTCTCCTTCGAATCATTCTGAT-TCGGC 305
| ||||||||| ||||| ||||| | | ||||||||| |||||| ||||| | |||
Sbjct 239 GGATCTGGTTCATCGTCCTTCTC----T-T-CTTCTCCTTTGAATCACCCTGATGT-GGC 291
Query 306 TGATGGTGAATCTGTGTCGAAGAATTGTAGTTTAGTGACGTTGGTTCTTAGTTGTACAGT 365
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 292 TGATGGTGAATCTGTGTCGAAGAATTGTAGCTTAGTAACGTTGGTTCTTAGTTGTACAGT 351
Query 366 TGCCGCTGGAGTTCAATTTGGTTGGGCATTGCAACTTTCTCTTCTTACTCCTTATATTCA 425
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 352 CGCTGCTGGAGTTCAATTTGGTTGGGCATTGCAACTTTCTCTTCTCACTCCTTATATTCA 411
Query 426 GACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCAATTACAGG 485
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 412 GACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTATGCGGCCCAATTACAGG 471
Query 486 CCTTGTGGTCCAGCCTTTTGTTGGCATTTGGAGTGATAAATGTACTTCAAAGTATGGAAG 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CCTTGTGGTCCAGCCTTTTGTTGGCATTTGGAGTGATAAATGTACTTCAAAGTATGGAAG 531
Query 546 AAGACGACCATTTATTCTAGTTGGATCAT-TCATGATCTCAATAGCAGTGATAATAATCG 604
|||||||||||||||||| |||||||| | |||||||||||||| |||||||||||||||
Sbjct 532 AAGACGACCATTTATTCTCGTTGGATC-TCTCATGATCTCAATATCAGTGATAATAATCG 590
Query 605 GATTTTCTGCAGACATTGGGTATCTGTTAGGAGATTCAAAGGAACATTGCAGTACTTTCA 664
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 591 GGTTTTCTGCAGACATTGGGTATCTGTTAGGAGATACAAAGGAACATTGCAGTACTTTCA 650
Query 665 AAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTTTTGGTTGTTGGATCTAG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTTTTGGTTGTTGGATCTAG 710
Query 725 CAAACAATACAGTACAGGGACCTGCTCGTGCTCTTCTAGCTGATCTATCAGGTCCTGATC 784
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CGAACAATACAGTACAGGGACCTGCTCGTGCTCTTCTAGCTGATCTATCAGGTCCTGATC 770
Query 785 AGCGGAATACTGCAAATGCTGTGTTCTGCTTGTGGATGGCTATTGGGAACATCCTTGGGT 844
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 771 AGCGGAATACTGCAAATGCTGTGTTCTGCTTGTGGATGGCTATTGGGAATATCCTTGGGT 830
Query 845 TTTCTGCCGGTGCTAGCGGAAAATGGCAAGAATGGTTCCCTTTTTTAACTAGTAGAGCAT 904
||||||| |||||||| ||| |||||||||||||||||||| |||||||||||||||
Sbjct 831 TTTCTGCTGGTGCTAGTGGACGTTGGCAAGAATGGTTCCCTTTCCTAACTAGTAGAGCAT 890
Query 905 GTTGTGCTGCATGTGGAAATCTCAAAGCAGCGTTTCTTCTTGCAGTGGTCTTTCTCACTA 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GTTGTGCTGCATGTGGAAATCTCAAAGCAGCGTTTCTTCTTGCAGTGGTCTTTCTCACTA 950
Query 965 TATGTACTCTTGTCACAATCTATTTTGCTAAAGAGATTCCTTTTACAAGCAACAAGCCCA 1024
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 951 TATGTACTCTTGTCACTATCTATTTTGCTAAAGAGATTCCTTTCACAAGTAACAAGCCCA 1010
Query 1025 CCCGCATACAAGATTCTGCACCTTTGTTGGATGATCTCCAGTCCAAAGGCCTTGAGCATT 1084
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1011 CCCGCATACCAGATTCTGCACCTTTGTTGGATGATCTCCAGTCTAAAGGCCTTGAGCATT 1070
Query 1085 CAAAATTAAATAATGGTACTGCCAATGGAATCAAGTATGAGAGAGTGGAACGTGATACGG 1144
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1071 CAAAATTGAATCATGGTACTGCCAATGGAATCAAGTATGAGAGAGTGGAACGTGATGTGG 1130
Query 1145 ATGAACAGTTTGGCAATTCAGAGAATGAGCATCAAGATGAGACCTACGTTGATGGCCCTG 1204
||| |||| ||||||||||| |||| |||||||||||||||| |||||||||||||||||
Sbjct 1131 ATGTACAGCTTGGCAATTCAAAGAACGAGCATCAAGATGAGAACTACGTTGATGGCCCTG 1190
Query 1205 GATCTGTTTTAGTGAATTTGCTAACTAGTTTAAGGCATTTGCCACCGGCTATGCACTCAG 1264
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1191 GATCTGTTCTAGTGAATTTGCTAACTAGTTTAAGACATTTGCCACCGGCTATGCACTCAG 1250
Query 1265 TTCTTATCGTCATGGCTCTTACATGGTTATCCTGGTTCCCCTTCTTTCTGTTCGATACAG 1324
||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1251 TTCTTATTGTCATGGCTCTTACATGGTTATCGTGGTTCCCCTTCTTTTTGTTCGATACAG 1310
Query 1325 ATTGGATGGGAAGAGAAGTTTACCATGGGGATCCAACAGGAGATAGTTTGCATATGGAAC 1384
||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct 1311 ATTGGATGGGAAGAGAAGTTTACCACGGGAATCCAACAGGAGATAGTTTGCATGTGGAAC 1370
Query 1385 TCTATGATCAAGGTGTACGTGAAGGTGCACTTGGTTTGCTACTAAACTCTGTTGTTCTTG 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TCTATGATCAAGGTGTACGTGAAGGTGCACTTGGTTTGCTACTAAACTCTGTTGTTCTTG 1430
Query 1445 GGATCAGCTCATTTCTCATTGAACCAATGTGTCAGCGGATGGGTGCTCGGGTTGTATGGG 1504
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1431 GGATCAGCTCGTTTCTCATTGAACCAATGTGTCAGCGGATGGGTGCAAGGGTTGTATGGG 1490
Query 1505 CTTTGAGCAATTTTACTGTATTTGCCTGCATGGCGGGAACAGCTGTAATCAGCTTGATGT 1564
|| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1491 CTCTGAGCAATTTTACTGTATTTGCATGCATGGCGGGAACAGCTGTAATTAGCTTGATGT 1550
Query 1565 CTCTCAGTGATGACAAAAATGGAATTGAATACATAATGCGTGGAAACGAAACAACAAGAA 1624
||||| ||||| ||||||||||| | |||| |||||||| ||||||||||||||||||||
Sbjct 1551 CTCTCGGTGATTACAAAAATGGAGTCGAATTCATAATGCATGGAAACGAAACAACAAGAA 1610
Query 1625 CCGCAGCCGTAATCGTTTTTGCACTCCTTGGTTTTCCCCTAGCTATCACATACAGTGTCC 1684
||||||| ||| |||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1611 CCGCAGCTGTAGTCGTCTTTGCACTCCTTGGTTTTCCTCTAGCTATCACATACAGTGTTC 1670
Query 1685 CTTTCTCTGTCACAGCAGAAGTCACTGCTGATTCCGGTGGCGGTCAAGGTTTGGCTATAG 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 CTTTCTCTGTCACAGCAGAAGTCACTGCTGATTCCGGTGGCGGTCAAGGTTTGGCTATAG 1730
Query 1745 GAGTGTTGAATCTCGCAATCGTTATTCCCCAGATGATAGTATCACTTGGAGCGGGTCCAT 1804
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 GAGTGTTGAACCTCGCAATCGTTATTCCCCAGATGATAGTATCACTTGGAGCGGGTCCAT 1790
Query 1805 GGGATCAATTGTTTGGAGGAGGAAACTTACCGGCGTTTGTTTTGGCGTCTGTTGCTGCTT 1864
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1791 GGGATCAATTGTTTGGAGGAGGAAATTTACCGGCGTTTGTTTTGGCGTCTGTTGCTGCTT 1850
Query 1865 TCGCTGCTGGAGTTATTGCATTGCAAAGGCTTCCCACGCTATCGAGTTCTTTCAAGTCCA 1924
| |||||||||||||| || ||||||||||||| |||||||| ||||||||||||||||
Sbjct 1851 TTGCTGCTGGAGTTATCGCCCTGCAAAGGCTTCCGACGCTATCTAGTTCTTTCAAGTCCA 1910
Query 1925 CCGGTTTCCACATCGGCTAAAATCTTTATACC--ACAGACATAAAATTCACAGTTAGATC 1982
| |||||||||||||| |||||||||| |||| | |||| ||||||||| | |||||||
Sbjct 1911 CTGGTTTCCACATCGGGTAAAATCTTTTTACCGGATAGACCTAAAATTCAGATTTAGATC 1970
Query 1983 TACCCGATTCTTTTTGACCACGTTCTCCTCTCGGCGTATATGTAAGTAGGTTTTGTACAT 2042
| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1971 CATTCGATTCTTTTTGACCATGTTCTCCTCTCGGCGTATATGTATGTAGGTTTTGTACAT 2030
Query 2043 CTAGTTTTCTTATATGTTATACACAGCAATGTGACTCTAAATTTACAGTACC-TCTCTTC 2101
||||||| | ||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 2031 TTAGTTTTGTAATATGGTATACACAGCAATGTGACTCTAAATTTACAGTACGATCTCTTC 2090
Query 2102 TCACGTA----G-----AATATATCTTCGTTATTTTGAATCACTTT 2138
|||| || | |||||||||||||||||||||||||||||
Sbjct 2091 TCACTTAATATGGTTCTAATATATCTTCGTTATTTTGAATCACTTT 2136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80446597440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5