BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02870.1
Length=2190
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484196 jgi|Araly1|484196|fgenesh2_kg.5__188__AT2G02870.1 3094 0.0
Ahg471603 jgi|Araly1|471603|fgenesh2_kg.1__1557__AT1G14330.1 869 0.0
Ahg888530 jgi|Araly1|888530|Al_scaffold_0007_516 235 1e-60
> Ahg484196 jgi|Araly1|484196|fgenesh2_kg.5__188__AT2G02870.1
Length=2169
Score = 3094 bits (1675), Expect = 0.0
Identities = 2058/2226 (92%), Gaps = 93/2226 (4%)
Strand=Plus/Plus
Query 1 AagagagagagagagaaaaaaaGAATTGTTCCTCTCAAAAGATTTTAACTTTGAG--CTC 58
|||||||||| | ||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 1 AAGAGAGAGAAAAAGAAAGAAAGAATTGTTCCTCTC-AAAGATTTTAACTTTGAGCTCTC 59
Query 59 TCTGAGAAACCAAAGCTTCACTCTGATTCGC-TCTCGAATCaaaagagacgacagagaaa 117
||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 60 TCTGAGAAACCAAAGCTTCACTCTGATTCGCAGAGCGAATCAAAAGAGACGACACAG--A 117
Query 118 gaagaagaagaaacgcgaagaacagaaaCAGCTCTCTTAAGCTTTTCTTAATTATTATTA 177
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 118 GAAGAAGAAGAAACGCGAAGAACAGAAACAGCTCTCTTAAGCTCTTCTTAATTATTATTA 177
Query 178 T-AATT-TT----CTCT-T-CTTAATCCCCAAATCTCCTGATGGATTCATGAACCAGATC 229
| |||| || |||| | ||||||||| |||||||| |||||| ||||||||||||||
Sbjct 178 TTAATTATTATTTCTCTCTTCTTAATCCCTAAATCTCCAGATGGAATCATGAACCAGATC 237
Query 230 GG---C------TGATTTGAGTTTCCGGGTTTGAtt-tttttCCC-TTTTTGTGAAATTG 278
|| | |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 238 GGGATCGAAAGATGATTTGAGTTTCCGGGTTTGATTCTTTTTCCCCTTTTTGTGAAATTG 297
Query 279 GGTTGGAATCTGGAGATCTGGATCTT-ATAAAGCTGGAAACTTTACGTGTGCTTGATGAA 337
|||||||||||||||||||||||||| | |||| | |||||||||||||| ||| ||
Sbjct 298 GGTTGGAATCTGGAGATCTGGATCTTGA-AAAGGTTGAAACTTTACGTGT-CTT--TG-- 351
Query 338 CCGATTTTGATTAGGTGATTGGTTAGATTCGGAAATTTGAAGACTTGTTAATTTGGGTTT 397
| | || || | ||| || | | | | || | | || |||||||||||
Sbjct 352 --G-TGGTG-TT-G---ATT--TT-G-T--G-A--TT-G--G--TT---AATTTGGGTTT 386
Query 398 GGGATTGGGATTGATCTGAAAATTTGTAGTTTTTGGAAGATATGTTGGAAGATCGATCAC 457
||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||
Sbjct 387 GGGATTGGGATTGATCTGAAAATTTGTTGTCTTTGGAAGAAATGTTGGAAGATCGATCAC 446
Query 458 CAGATTCGTGTTTGAGTACAAGGGTTTTCTCAAGCTCTCGTCTTTCTGAATCAAACTGGT 517
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 CAGATTCGTGTTTGATTACAAGGGTTTTCTCAAGCTCTCGTCTTTCTGAATCAAACTGGT 506
Query 518 CTAACTCTTACATGTATCCAGAGGATGATGATAAGCTCCTCGGTAATGGTAAAAGAGCTT 577
|||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||
Sbjct 507 CTAAGTCTTACATGTATCCAGAGGATGATGATAAGCTCG--GG-AATGGTAAAAGACCTT 563
Query 578 TGGAGGTTGTTGGTGAGGTTAGACAGACCAAATCACTTAAATTAATGGGTTTTTCGATTA 637
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 564 TGGAGGTTGTTGGTGAGATTAGACAGACCAAATCACTTAAATTAATGGGTTTTTCTATTA 623
Query 638 TCT-ATGATAGCGATTCTTCTGACTATTCATTGAGTGGTGGGGAGGAGCAAGCTGATGCT 696
|| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 624 -CTTATGATAGCGATTCATCTGACTATTCATTGAGTGGTGGGGAGGAGCAAGCAGATGCT 682
Query 697 GCT-ATTGGTGATGGCTCATCATCAAGGCAGGAGCAAGAACAGCAATCTGATTTTAATGA 755
| | ||||||||||||||||| || ||||||||||||||||| | ||||||| ||||||
Sbjct 683 G-TGATTGGTGATGGCTCATCGTCGAGGCAGGAGCAAGAACA--A-TCTGATTCTAATGA 738
Query 756 CAATGGTGGTGATTCTTCGGATTCTCACTCTCTTATCAATGAGATTGGGAGGGACAATTC 815
|||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 739 CAATGGTGGTGATTCTACGGATTCGCATTCTCTTATCAATGAGATTGGGAGGGACAATTC 798
Query 816 GATCGACTGTTTGATCCGTTGCTCGAGGTCTGATTATGGTTCTATTGCTTCCTTGAACCG 875
||| |||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 799 GATTGACTGTTTGATCCGCTGCTCGAGGTCTGATTATGGTTCAATTGCTTCTTTGAACCG 858
Query 876 GAATTTCCGTTCTTTGGTAAAGAGTGGAGAGATTTATAGATTAAGGCGACAAAACGGGTT 935
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 859 GAATTTCCGTTCTTTGGTAAAGAGTGGAGAGATTTATAGATTAAGGCGACAAAGCGGGTT 918
Query 936 TGTTGAACATTGGGTTTACTTCTCTTGCCAGCTCTTGGAATGGGTTGCGTTTGATCCTGT 995
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 919 TGTTGAACATTGGGTTTACTTCTCTTGCCAGCTCTTGGAATGGGTTGCGTTCGATCCTGT 978
Query 996 TGAGAGAAGGTGGATGCAGTTGCCAACTATGCCTTCCAGTGTTACCTTCATGTGTGCAGA 1055
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 979 CGAGAGAAGGTGGATGCAGTTACCAACTATGCCTTCCAGTGTTACCTTCATGTGTGCCGA 1038
Query 1056 TAAGGAGTCTCTGGCCGTTGGGACGGACCTGCTTGTCTTAGGAAAAGATGATTTTTCTTC 1115
||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||
Sbjct 1039 TAAGGAGTCTCTGGCCGTTGGGACGGATCTGCTTGTCTTAGGAAAAGATGCTT---CTTC 1095
Query 1116 TCATGTAATATACAGATACAGTCTACTCACTAATTCTTGGTCTTCTGGTATGAAGATGAA 1175
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1096 TCATGTAATATACAGATACAGTCTACTGACTAATTCTTGGTCTTCTGGTATGAAGATGAA 1155
Query 1176 CTCTCCGAGGTGTTTGTTTGGATCCGCGAGCCTTGGAGAGATTGCTATATTCGCTGGTGG 1235
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1156 CTCTCCGAGGTGTTTGTTTGGATCCGCGAGCCTTGGAGAGATTGCTATATTTGCTGGTGG 1215
Query 1236 ATGTGATTCCCAGGGAAAGATTCTTGATTTTGCGGAAATGTATAATTCTGAGCTTCAAAC 1295
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1216 ATGTGATTCCCAGAGAAAGACTCTTGATTTTGCGGAAATGTATAATTCTGAGCTTCAAAC 1275
Query 1296 TTGGATAACTCTTCCAAGGATGAACAAACCGAGGAAGATGTGTTCGGGAGTTTTTATGGA 1355
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1276 TTGGATAACTCTTCCAAGGATGAACAAACCGAGGAAGATGTGTTCGGGTGTTTTTATGGA 1335
Query 1356 CGGGAAGTTCTATGTAATTGGAGGAATCGGTGGTGCTGATTCTAAAGGCTTGACCTGCGG 1415
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1336 TGGGAAGTTCTATGTAATTGGAGGAATCGGTGGTGCTGATTCTAAAGTCTTGACCTGCGG 1395
Query 1416 TGAAGAATATGATTTGGAGACCAAGAAATGGACTCAAATCCCTGACTTGTCGCCTCCAAG 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 TGAAGAATATGATTTGGAGACCAAGAAATGGACTCAAATCCCTGACTTGTCGCCTCCAAG 1455
Query 1476 AAGCCGTGCTGATCAAGCTGATATGTCACCAGCAGCG-GAAGCACCGCCTCTTGTTGCGG 1534
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1456 AAGCCGTGCTGATCAAGCTGATATGTCACCAGCA-CAAGAAGCACCGCCTCTTGTTGCGG 1514
Query 1535 TTGTGAATAACCAATTATACGCTGCTGATCACGCCGATATGGAAGTGAGGAAGTACGATA 1594
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1515 TTGTGAATAACCAATTGTACGCTGCTGATCACGCCGATATGGAAGTGAGGAAGTATGATA 1574
Query 1595 AGGAGAATAAGAAGTGGTTAACTGTTGGAAGATTGCCTGAAAGAGCTGGCTCGGTAAACG 1654
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1575 AGGAGAATAAGAAATGGTTAACTGTTGGAAGATTGCCTGAAAGAGCTGGCTCGGTTAACG 1634
Query 1655 GATGGGGACTTGCTTTTAGAGCTTGTGGAGAGCGGTTAATTGTTATTGGTGGACCGAAGT 1714
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1635 GATGGGGACTTGCTTTTAGAGCTTGTGGGGAGCGGTTAATCGTTATTGGTGGACCGAAGT 1694
Query 1715 GCTCAGGAGGTGGTTTCATAGAGCTAAATTCTTGGATACCGAGCGACGGTGGTCCACCTC 1774
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1695 ACTCAGGAGGTGGGTTCATAGAGCTGAATTCTTGGATACCGAGCGACGGTGGTCCACCGC 1754
Query 1775 AGTGGACACTACTTGACAGGAAACATTCTCCTACTTTCGTATACAATTGTGCAGTGATGG 1834
|||||||| | |||||||||||||||||||||| ||| ||||||||||| ||||||||||
Sbjct 1755 AGTGGACATTGCTTGACAGGAAACATTCTCCTAATTTTGTATACAATTGCGCAGTGATGG 1814
Query 1835 GTTGCTAAAAGAACACACATTCATAATACTACGACTATCCATTTGAAGACCCTCCAGATT 1894
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1815 GTTGCTAAAAGAACACACATTCATAATACTAC---TATCGATTTGAAGACCCTCCAGATT 1871
Query 1895 CTTGTTGATGGGTTTTAGCTTACAAGTCAAAAGACACCATTGAAGGTCCCACGCTCCAAC 1954
|||||||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 1872 CTTGTTGATGGGTTTTCGCTCACACGTCAAAAGACACCATTGAAGGTCCCAAGCTCCAAC 1931
Query 1955 CTTTATGCTTCTTCTTCTTCTTCCTTATTTGTTTCCCTTACAAAATTTTCAATTTGAATA 2014
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1932 CTTTATGCTTCTTCTTC--CTT----ATTTGTTTCCCTTACAAAATTTTCAATTTGAATA 1985
Query 2015 CAATCATCTCTGTATTGTTAGAAACCAGACAAAAGTCCCAAGGAGATTCCa-aaaaaaaa 2073
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 1986 CAATCATCTCTGTATTGTTAGAAACCAGACAAA-GTCCCCAGGAGATTCCACAAAAAAAA 2044
Query 2074 -aaggaaaaaaaaaaa-----CTGAAACAGGTTTAT-A-A-TAAGTTCGTTAAAAGTTGA 2124
|| |||||||||||| ||||||||||||||| | | |||||| ||||||| ||||
Sbjct 2045 GAAAGAAAAAAAAAAAAAAAACTGAAACAGGTTTATTATAATAAGTTAGTTAAAAATTGA 2104
Query 2125 AGCTTTTTAGAGTTTGCCAGATCTGGTTAACATTGTTGTATGTGTTTTTAATCAAATTTG 2184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2105 AGCTTTTTAGAGTTTGCCAGATCTGGTTAACATTGTTGTATGTGTTTT-AATCAAATTTG 2163
Query 2185 TTTTCT 2190
||||||
Sbjct 2164 TTTTCT 2169
> Ahg471603 jgi|Araly1|471603|fgenesh2_kg.1__1557__AT1G14330.1
Length=1998
Score = 869 bits (470), Expect = 0.0
Identities = 880/1073 (82%), Gaps = 47/1073 (4%)
Strand=Plus/Plus
Query 787 CTTATCAATGAGATTGGGAGGGACAATTCGATCGA-CTGTTTGATCCGTTGCTCGAGGTC 845
||||||||||| ||||| |||||||||||||| | ||||||||||||||| ||||||||
Sbjct 722 CTTATCAATGATATTGGCAGGGACAATTCGAT-AAGCTGTTTGATCCGTTGTTCGAGGTC 780
Query 846 TGATTATGGTTCTATTGCTTCCTTGAACCGGAATTTCCGTTCTTTGGTAAAGAGTGGAGA 905
|||||| ||||| |||||||| || ||||||| ||| || ||| |||| |||| |||||
Sbjct 781 TGATTACGGTTCCATTGCTTCTTTAAACCGGAGTTTTCGGTCTCTGGTGAAGACCGGAGA 840
Query 906 GATTTATAGATTAAGGCGACAAAA-CGGGTTTGTTGAACATTGGGTTTACTTCTCTTGCC 964
|||||||||| | ||| | ||||| | || ||||||||||||||||||||||||||||||
Sbjct 841 GATTTATAGACTCAGGAGGCAAAACCAGG-TTGTTGAACATTGGGTTTACTTCTCTTGCC 899
Query 965 AGCTCTTGGAATGGGTTGCGTTTGA-TCCTGTTGAGAGAAGGTGGATGCAGTTGCCAACT 1023
||||||||||||||||||| ||| | ||||||||| ||||| |||||| | ||||| ||
Sbjct 900 AGCTCTTGGAATGGGTTGC-TTTCAATCCTGTTGAAAGAAGATGGATGAATTTGCCTACA 958
Query 1024 ATGCCTTCCAG-TGTTACCTTCATGTGTGCAGATAAGGAGTCTCTGGCCGTTGGGACGGA 1082
|||||||| || || ||| ||||||||||| ||||| || || || || ||||| |||||
Sbjct 959 ATGCCTTC-AGGTGGTACATTCATGTGTGCTGATAAAGAATCGCTCGCTGTTGGTACGGA 1017
Query 1083 CCTGCTTGTCTTAGGAAAAGATGATTTTTCTTCTCATGTAATATACAGATACAGTCTACT 1142
||||||| ||||| |||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 1018 TTTGCTTGTTTTAGGCAAAGATGATTACTCTTCTCATGTTATATACAGATACAGTCTTTT 1077
Query 1143 CACTAATTCTTGGTCTTCTGGTATGAAGATGAACTCTCCGAGGTGTTTGTTTGGATCCGC 1202
||||| |||||||| || ||||||| |||||| |||||||||||||||||||| || ||
Sbjct 1078 GACTAACTCTTGGTCGTCCGGTATGAGGATGAATTCTCCGAGGTGTTTGTTTGGCTCAGC 1137
Query 1203 GAGCCTTGGAGAGATTGCTATATTCGCTGGTGGATGTGATTCCCAGGGAAAGATTCT-TG 1261
||| || ||||||||||| || ||||||||||| | |||||| | | || || | ||
Sbjct 1138 GAGTCTAGGAGAGATTGCGATCTTCGCTGGTGGTTTTGATTCTCTTCGCAATAT-CAGTG 1196
Query 1262 ATTTTGCGGAAATGTATAATTCTGAGCTTCAAACTTGGA-TAACTCTTCC-AAGGATGAA 1319
||| || || |||||||| ||||||||||| ||||||| || | ||||| ||| |||||
Sbjct 1197 ATTCCGCTGAGATGTATAACTCTGAGCTTCAGACTTGGACTA-CACTTCCGAAG-ATGAA 1254
Query 1320 CAAACCGAGGAAGATGTGTTCGGGAGTTTTTATGGACGGGAAGTTCTATGTAATTGGAGG 1379
||||||||||| | |||||||||| ||||| ||||| |||||||| ||||| ||||||||
Sbjct 1255 CAAACCGAGGAGGTTGTGTTCGGGTGTTTTCATGGATGGGAAGTTTTATGTCATTGGAGG 1314
Query 1380 AATCGGTGGTGCTGATTCTAAAG-GCTTGACCTGCGGTGAAGAATAT-GATTTGGAGACC 1437
||| || || |||| || |||| |||| || |||||||| || | | ||||| |||||
Sbjct 1315 AATTGGAGGAACTGACTCGAAAGTGCTT-ACTTGCGGTGAGGAGT-TCGATTTAGAGACA 1372
Query 1438 AAGAAATGGACTCAAATCCCTGACTTGTCGCCTCCAAGAAGCCGTGCTGATCAAGCTGAT 1497
|||||||||||| | ||||| || ||||||||||||| ||||| | || || ||
Sbjct 1373 AAGAAATGGACTGAGATCCCGGAAATGTCGCCTCCAAGGAGCCG-G--GA--AA--TGCC 1425
Query 1498 ATGTCACCAGCAGCGGAAGCACCGCCTCTTGTTGCGGTTGTGAATAACCAATTATACGCT 1557
| | || |||||| || || | ||||||||||||||||||||||| || || || ||
Sbjct 1426 A-G-CAGCAGCAGAGGC-GC-CA-CCTCTTGTTGCGGTTGTGAATAATCAGTTGTATGCC 1480
Query 1558 GCTGATCACGCCGATATGGAAGTGAGGAAGTACGATAAGGAGAATAAGAAGTGGTTAACT 1617
|| ||||| || ||||||||||| |||||||| ||||| |||| |||||| ||||| |||
Sbjct 1481 GCGGATCATGCTGATATGGAAGTTAGGAAGTATGATAAAGAGAGTAAGAAATGGTTTACT 1540
Query 1618 GTT-GGAAGATTGCCTGAAAGAGCTGGCTCGGTAAACGGATGGGGACTT-GCTTTTAGAG 1675
|| || ||||||| ||||||||||||||||| ||||| |||||| || || |||||||
Sbjct 1541 -TTAGGGCGATTGCCGGAAAGAGCTGGCTCGGTTAACGGTTGGGGA-TTAGCGTTTAGAG 1598
Query 1676 CTTGTGGAGAGCGGTTAATTGTTATTGGTGGACC--GAAGTGCTCAGGAGGTGGTTTCAT 1733
|||| || |||||||||||||| |||||||| || ||||| ||||| || || | |||
Sbjct 1599 CTTGCGGTGAGCGGTTAATTGTGATTGGTGGTCCTAGAAGT--TCAGGTGGAGGGTACAT 1656
Query 1734 AGAGCTAAATTCTTGGATACCG---AGCGA-CGGTGGTCCACCTC-AGTGGACACTACTT 1788
||||| ||||| |||||||| || || || | |||||||| | |||||| | ||
Sbjct 1657 TGAGCTGAATTCCTGGATACCATCTAGTGATCGAAG-TCCACCTCTA-TGGACATTGCTC 1714
Query 1789 GACAGGAAACATTC-TCCTACTTTCGTATACAATTGTGCAGTGATGGGTTGCT 1840
| ||||||||||| || | |||||||||||||||||| |||||||||||||
Sbjct 1715 GGTAGGAAACATTCATCGAA-TTTCGTATACAATTGTGCGGTGATGGGTTGCT 1766
> Ahg888530 jgi|Araly1|888530|Al_scaffold_0007_516
Length=474
Score = 235 bits (127), Expect = 1e-60
Identities = 150/161 (93%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 564 TGGTAAAAGAGCTTTGGAGGTTGTTGGTGAGGTTAGACAGACCAAATCACTTAAATTAAT 623
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 312 TGGTAAAAGACCTTTGGAGGTTGTTGGTGAGATTAGACAGACCAAATCACTTAAATTAAT 371
Query 624 GGGTTTTTCGATTATCT-ATGATAGCGATTCTTCTGACTATTCATTGAGTGGTGGGGAGG 682
|||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 372 GGGTTTTTCGATTA-CTTATGATAGCGATTCATCTTACTATTCATTGAGTGGTGGGGAGG 430
Query 683 AGCAAGCTGATGCTGCTATTGGTGATGGCTCATCATCAAGG 723
|||||| |||||| | |||||||||||||||||||| |||
Sbjct 431 TGCAAGCAGATGCTACAATTGGTGATGGCTCATCATCGAGG 471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82427290180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5