BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02880.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936061 jgi|Araly1|936061|scaffold_500252.1 1454 0.0
> Ahg936061 jgi|Araly1|936061|scaffold_500252.1
Length=992
Score = 1454 bits (787), Expect = 0.0
Identities = 919/980 (94%), Gaps = 20/980 (2%)
Strand=Plus/Plus
Query 40 ACCACTCTCACTGAGAAGATGAATTCTCTTCATCGTGTAGTAGGATTGATCAGCAGAACG 99
|||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 3 ACCACTCTCACTGAGAAGATGAATTCACTTCATCGTGTAATAGGATTGATCACCAGAACA 62
Query 100 A---CGACTAC-A--TC-TC--CAATTTCTCATACCCGTTTCAATCTCCCATCGATTCTC 150
| ||| | | | || || |||||| ||||||||||| ||||||||||||||||||
Sbjct 63 ACCCCGAATCCAATTTCTTCAAGAATTTCGCATACCCGTTTAAATCTCCCATCGATTCTC 122
Query 151 GTCAATTTGATGTCCACAAAATCTGGAAACGATGAAGACAAATGGAACGACGCTTGGGAA 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GTCAATTTGATGTCCACAAAATCTGGAAACGATGAAGACAAATGGAACGACGCTTGGGAA 182
Query 211 TCAGCTTGGTTACCAGATGATCTCACAGATAAAATCCGAGCACCATGGGAGAGAGATGTG 270
||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||
Sbjct 183 TCAGCTTGGTTACCAGATGATCTCACAGATAAAATACGAGCTCCATGGGAGACAGATGTG 242
Query 271 AACTTCCCTGTAAAAGAATCAACGGCGACGGCGATTGAAGAAATCGATGTGGAAGCAAAA 330
|||||| ||||||||||||||||||| ||| | | ||||||||||||||||||||||||
Sbjct 243 AACTTCTCTGTAAAAGAATCAACGGCCACGAC--T-GAAGAAATCGATGTGGAAGCAAAA 299
Query 331 GCGTTCGTAGAGGATATGAATGAGCATTGGGACgagaggagagggaagagtgggaaagtg 390
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 GCGTTCGTAGAAGATATGAATGAGCATTGGAACGAGAGGAGAGGGAAGAGTGGGAAAGTG 359
Query 391 gagaagagagaagagaagaagaa-a--gagattggagatggagaagaTGAATCATCATCA 447
||||||||||||||||||||||| | |||||||||||||||||||| | |||||||||
Sbjct 360 GAGAAGAGAGAAGAGAAGAAGAAGAAAGAGATTGGAGATGGAGAAGA--A-TCATCATCA 416
Query 448 TCGCTTTATAGTTTGGAGACGATGAAGAAGGATTATAGGTTGAAGAAACAAAGAGTTCAT 507
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 417 TCGCTTTATAGTTTGGAAACGATGAAGAAAGATTATAGATTGAAGAAACAAAGAGTTCAT 476
Query 508 GCTTCTCTGTGGGTTAAAGAGATTGAGAAATTGGAAGAAGCTAAATT-GGATGATTCTGG 566
|||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 477 GCTTCTTTGTGGGTTAAAGAGATTGAGAAATTGGAAGAAGCTAAATTAGG-TGATTCTGG 535
Query 567 ATCTGGTGGTGGAGCTGATGATATTGATAGGCTTCTTGATAGTTGCTCAGAGATTTTCGA 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ATCTGGTGGTGGAGCTGATGATATTGATAGGCTTCTTGATAGTTGCTCAGAGATTTTCGA 595
Query 627 TTCGGTAGACCATGATTTTGACAAATTAGAGGTTTCGAGTGGATCTGAATTGAAGAATAA 686
||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 596 CTCGGTAGACCATGATTTCGACAAATTGGAGGTTTCGAGTGGATCTGAACTGAAGAACAA 655
Query 687 GCCTGATGGTTGGGAATCAACAGCAAAGGAACAAGATGGAAACCTCTGGGAGATGTCACA 746
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 656 GCCTGATGGTTGGGAATCAACAGCAAAGGAACAAGATGGAAATCTCTGGGAGATGTCGCA 715
Query 747 AAGAGAAGAAGACATTCTTCTCCAAGAATTTGATCGTCGCACTGCCTTCTGCAAATTTCA 806
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 716 AAGAGAAGAAGACATTCTTCTCCAAGAATTTGATCGCCGTACTGCCTTCTGCAAATTTCA 775
Query 807 GATAGCTAGTTTTATAAAGCAACACATATTCAGTAGGAGAAGACCGATTGATGGGTGGAA 866
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GATAGCGAGTTTTATAAAGCAACACATATTCAGTAGGAGAAGACCGATTGATGGGTGGAG 835
Query 867 ATACATGATTGAAGTGATTGGTCCAAATGCGAGGAAAGGGAAAGGAAGTGTTTCTAGGCT 926
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 ATACATGATAGAAGTGATTGGTCCAAATGCGAGGAAAGGGAAAGGAAGTGTTTCTAGGCT 895
Query 927 CCCGGCTTTATCGGATGTGTCGACTCAGCCGTTTAAAGAAGAAACCAGCAGTCTCACTAC 986
|||||||||||||||||||||||||||||| || ||||||||||| | || ||||||||
Sbjct 896 CCCGGCTTTATCGGATGTGTCGACTCAGCCCTTCAAAGAAGAAACTGGGAGCCTCACTAC 955
Query 987 CTTGAAGCGTCGGTAGAAGA 1006
|||||||| ||||||||||
Sbjct 956 TTTGAAGCGCCGGTAGAAGA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5