BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02910.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484201 jgi|Araly1|484201|fgenesh2_kg.5__193__AT2G02910.1 2359 0.0
Ahg896254 jgi|Araly1|896254|Al_scaffold_0005_220 231 9e-60
> Ahg484201 jgi|Araly1|484201|fgenesh2_kg.5__193__AT2G02910.1
Length=1640
Score = 2359 bits (1277), Expect = 0.0
Identities = 1515/1624 (93%), Gaps = 40/1624 (2%)
Strand=Plus/Plus
Query 4 TTCTAAATCGCCACCAGGTAGGTTTCATGGTGAGCTAGAGATCTTCGCTTCA-GTGTTTA 62
|||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 1 TTCTAAATCGTCACCAGGTTTGTTTCATGGTGAGCTAGAGATCTTCGCTTCAGGTTTTTA 60
Query 63 AGGATTAGATAATGTTACCGGAGAGAAGAAGCACGGT-G-TT-TTCTTCTTCTTCTTCAT 119
||||| ||||||||||||||||||||||||| ||||| | || ||||||||| |||||||
Sbjct 61 AGGATCAGATAATGTTACCGGAGAGAAGAAGTACGGTGGTTTCTTCTTCTTCATCTTCAT 120
Query 120 ATCTGAATCCATCTGGTCACAATGATAATTCTTTTTTACTTCTTCGGAGAGGCAAAAAGT 179
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 ATCTGAATCAATCTGGTCACAATGATAATTCTTTTTTGCTTCTTCGGAGAGGCAAAAAGT 180
Query 180 TTGGTCGTATTGTGAAATTGAAGctttcacatttctttttgttctttgtgtcactctttt 239
||||||| || |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 181 TTGGTCGGATAGTGAAATTGAAGCTCTCACATTTGTTCTTGTTCTTTGTGTCACTCTTTT 240
Query 240 tcttctcttgcatgttctctGGCCATAAACTACTCTTTCATGGTTCTGAGTTCTTACCTC 299
||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 TCTTCTCTTGCTTCTTCTCTGGCCATAAACTACTCTTTCATGGTTCTGAATTCTTACCTC 300
Query 300 ATTTTGAGCAAAACCCTTACATGAACAGTCATATGTTGGTTTCATCGGAGATTGATATAG 359
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 301 ATTTTGAGCAAAACCCTTACATGAAAAGTCATATGTTGGTTTCATCAGAGATTGATATAA 360
Query 360 GATTAAACAAATCCAACATCGAAAGACCACCTGGAAGCAAGAAGAGAACCAAGCATTTAC 419
||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 361 GATCAAACAAATCCAACATCGAAAGACCACCCGGAAGCAAGAAGAGAACTAAGCATTTAC 420
Query 420 CTTGTGAAGTTCCACTTGCTGAATCTGCTGATCGCATACTTGAGCCTCAGGATTATTTGA 479
||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 421 CTTGTGAAGTTCCACTTGCTGAATCTGTTGATCGCATACTTGATCCTCACGATTATTTGA 480
Query 480 ATTTCACTCGGTTTTCGTTAGGCTTTGTAGAGACTGAGACATATGATAACCCTAGGTTTG 539
|||| || |||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 481 ATTTTACGCGGTTTTCGTTAGGCTTTGTAGTGACTGAGACATATGATAAGCCTAGGTTTG 540
Query 540 GAGGGCATCAAACACTC-AGTGAAAGAGAGAGATCTTACTCTGCAGTAAATCAGACAATT 598
||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||
Sbjct 541 GAGGGCATCAAACACTCAAG-GAAAGAGAGAGATCTTACTCTGCAATAAATCAGACAATT 599
Query 599 CACTGT-G----GTT--------T--T-G---TCA--AAGGAACTGGATTTGATTTGAGC 637
|||||| | ||| | | | ||| |||| |||||||||||||||||
Sbjct 600 CACTGTGGTTTTGTTAAAGGAACTAATGGATTTCATCAAGGGACTGGATTTGATTTGAGT 659
Query 638 GAAAAGGATAGGGCCTATATGAAGAACTGTGTAGTCTCTGTGTCTTCTTGCATTTTTGGA 697
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAAATGGATAGGGCTTATATGAAGAACTGTGTAGTCTCTGTGTCTTCTTGCATTTTTGGA 719
Query 698 AGCTCTGATTTTCTAAGGAGACCTGCAACCAAAAAGATTAGTGAGTTTTCGAAGCGAAAT 757
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 720 AGCTCTGATTTTCTAAGGAGACCTGCAACCAAAAAGATCAGTGAATTCTCGAAGCGAAAT 779
Query 758 GTTTGCTTTGTGATGTTTGTTGATGAGCAAACGCTATCGAAACTGGCTAGTGAAGGGCAT 817
||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 780 GTTTGTTTTGTGATGTTCGTTGATGAGCAAACACTATCGAAACTTGCTAGTGAAGGGCAT 839
Query 818 GTTCCTGACAAGCAAGGATTTGTTGGTTTGTGGAAAACTGTAGTAGTGAGCAATTTGCCT 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTTCCTGACAAGCAAGGATTTGTTGGTTTGTGGAAAACTGTAGTAGTGAGCAATTTGCCT 899
Query 878 TATAATGATATGCGAAAGACTGGCAAGGTTCCGAAATTTCTGTCACACCGCCTTTTTCCT 937
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 900 TATACTGATATGCGAAAGACTGGAAAGGTTCCGAAATTTCTGTCACACCGCCTTTTTCCT 959
Query 938 TCTTCTAGGTATTCAATTTGGCTAGATAGTAAGATGAGACTCACTACAGATCCTATGCTG 997
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCTTCTAGGTATTCGATTTGGCTAGATAGTAAGATGAGACTCACTACAGATCCTATGCTG 1019
Query 998 ATCATTGACTTCTTCTTATGGAGAACAAAATCAGAATTCGCTATCTCCAACCATTATGAC 1057
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1020 ATCATTGACTTCTTCTTATGGAGAACAAAATCAGAATTCGCTATCTCGAACCATTATGAC 1079
Query 1058 CGGCATTGTGTGTGGGATGAAGTGTTACAGAACAAACGGCTGAATAAGTACAACCATTCG 1117
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1080 CGGCATTGTGTTTGGGATGAAGTGTTACAGAACAAACGGCTGAACAAGTACAACCATTCG 1139
Query 1118 GCCATTGATGAACAGTTTATGTTTTACCGATCAGATGGTCTCAAGAAATTTGATCCTTCA 1177
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1140 GCCATCGATGAACAGTTTATGTTCTACCGATCAGATGGTCTCAAGAAATTTGACCCTTCA 1199
Query 1178 GATCCTAATTCTCCTCTTCCAAGTTATGTACCGGAAGGTTCTTTTATTGTAAGGGCTCAT 1237
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1200 GATCCTAATTCTCCTCTTCCAAGTTATGTACCTGAAGGTTCTTTTATTGTAAGGGCTCAT 1259
Query 1238 ACACCAATGTCAAACCTCTTCACTTGCCTTTGGTTCAATGAAGTTGATCGGTTTACCTCA 1297
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1260 ACACCAATGTCAAACCTCTTCACATGCCTTTGGTTCAATGAAGTTGATCGGTTTACCTCA 1319
Query 1298 CGAGATCAGTTGAGTTTTGCATACACATACCTTAAACTTCAGAGACTGAATTCGGATAGA 1357
|||||||| ||||||||||| ||||||||||||||||| |||||||||||| | ||||||
Sbjct 1320 CGAGATCAATTGAGTTTTGCGTACACATACCTTAAACTGCAGAGACTGAATCCAGATAGA 1379
Query 1358 CCCTTGCGCCTAAACATGTTCAAGGATTGTGAGCGTCGAGCATTAACTAAGCTCTTCCAC 1417
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1380 CCCTTACGCCTAAACATGTTCAAGGACTGTGAACGTCGAGCATTAACTAAGCTCTTCCAC 1439
Query 1418 CATCGCGTAGATTCATCGCCTCCTTCACCTCCTACTTGATTGATTAAGTATAGATAGTGT 1477
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1440 CATCGCGTAGATTCATCGCCTCCTTCACCTCCTGCTTGATTGATTAAGTAAAGATAGTGT 1499
Query 1478 TCTTATGTTTCTACAATTTTTGTACTTTTCTCCTCTTTATACTT-TT--AGTCTAACTTT 1534
||| | | | | ||||||||||||||||| | || ||||| || |||||||||||
Sbjct 1500 TCT-A-----C-A-A-TTTTTGTACTTTTCTCCGCATTCTACTTCTTCTAGTCTAACTTT 1550
Query 1535 GAAGGAGATGAAACATGGAAGAGGAACCTAATTGACATTGTGTATGAGCCATTATAGTAA 1594
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1551 GAAGGAGATGAAACATGGAAGAGGAACCTAATTGACATTGTGTATGAGCCAAGATAGAAA 1610
Query 1595 -CTT 1597
|||
Sbjct 1611 TCTT 1614
> Ahg896254 jgi|Araly1|896254|Al_scaffold_0005_220
Length=420
Score = 231 bits (125), Expect = 9e-60
Identities = 161/178 (90%), Gaps = 4/178 (2%)
Strand=Plus/Plus
Query 413 CATTTACCTTGTGAAGTTCCACTTGCTGAATCTGCTGATCGCATACTTGAGCCTCAGGAT 472
||||||| ||||||||||||||||||||||| || |||| |||||||||||||||| |||
Sbjct 244 CATTTACTTTGTGAAGTTCCACTTGCTGAATTTGTTGATTGCATACTTGAGCCTCATGAT 303
Query 473 TATTTGAATTTCACTCGGTTTTCGTTAGGCTTTGTAGAGACTGAGACATATGATAAC-CC 531
||||||||||| | |||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct 304 TATTTGAATTTTGCACGGTTTCCGTTATGCTTTGTAGAGACTGAGACATATGAT-ACGCC 362
Query 532 TAGGTTTGGAGGGCATCAAACACTCAGTGAAAGAGAGAGA--TCTTACTCTGCAGTAA 587
||||||||||||||||||||||||||| |||||||||||| ||||||||| || |||
Sbjct 363 TAGGTTTGGAGGGCATCAAACACTCAGAGAAAGAGAGAGAGATCTTACTCTACAATAA 420
Score = 230 bits (124), Expect = 3e-59
Identities = 143/152 (94%), Gaps = 1/152 (1%)
Strand=Plus/Plus
Query 164 CGGAGAGGCA-AAAAGTTTGGTCGTATTGTGAAATTGAAGctttcacatttctttttgtt 222
|||||||||| ||||||||||||| || |||||||||||||| ||||||||||| |||||
Sbjct 93 CGGAGAGGCACAAAAGTTTGGTCGGATAGTGAAATTGAAGCTCTCACATTTCTTCTTGTT 152
Query 223 ctttgtgtcactctttttcttctcttgcatgttctctGGCCATAAACTACTCTTTCATGG 282
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 153 CTTTGTGTCACTCTTTTTCATCTCTTGCATGTTCTCTCGCCATAAACTACTCTTTCATGG 212
Query 283 TTCTGAGTTCTTACCTCATTTTGAGCAAAACC 314
|||||||||||||||| ||||| |||||||||
Sbjct 213 TTCTGAGTTCTTACCTTATTTTAAGCAAAACC 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5