BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02930.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490313 jgi|Araly1|490313|fgenesh2_kg.6__3447__AT4G02520.1 1341 0.0
Ahg484202 jgi|Araly1|484202|fgenesh2_kg.5__194__AT4G02520.1 1194 0.0
> Ahg490313 jgi|Araly1|490313|fgenesh2_kg.6__3447__AT4G02520.1
Length=966
Score = 1341 bits (726), Expect = 0.0
Identities = 868/932 (93%), Gaps = 27/932 (3%)
Strand=Plus/Plus
Query 10 TACTTGTGTGTTATTTCATCACCTTCACCTTCAACATCAAACATCACATCTCTTTCTCTT 69
||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 21 TACTTGTGTCTTATTTCACCACCTTCACCTTCAACATCAAACATCACA------TCTC-- 72
Query 70 TTATCTCTTTTTCTCGGTCTTCAAAGAGTTTCTTAGTTACCAAATCAATGGCAGGTATCA 129
||| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 73 TTA---------CTCAGTCTTCAAAGAGTTTCTTAGTAACCAAATCAATGGCAGGTATCA 123
Query 130 AAGTTTTCGGACACCCAGCTTCCACTT-CCACCAGGAGAGTCCTCATCGCCCTCCATGAG 188
|||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 124 AAGTTTTCGGACACCCAGCTTCCA-TTGCCACCAGGAGAGTCCTCATCGCCCTCCACGAG 182
Query 189 AAAAACCTCGACTTTGAGCTCGTTCATGTTGAACTCAAAGACGGTGAGCACAAGAAGGAG 248
|| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 183 AAGAACCTCGACTTTGAGCTCGTTCATATCGAACTCAAAGACGGTGAGCACAAGAAGGAG 242
Query 249 CCTTTCCTCTCCCGCAACCCTTTTGGTCAAGTTCCAGCCTTTGAAGATGGAGACCTCAAG 308
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 243 CCTTTCCTCTCCCGCAACCCTTTTGGACAAGTTCCAGCCTTTGAAGATGGAGACGTCAAG 302
Query 309 CTCTTCGAATCAAGAGCGATTACTCAGTACATAGCTCACCGA-TACGAAAACCAAGGAAC 367
|||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 303 CTCTTCGAATCAAGAGCGATTACTCAGTACATAGCTCACC-AGTATGAAAACCAAGGAAC 361
Query 368 CAACCTTCTCCCAGCTGACTCCAAGAACATAGCTCAGTATGCAATCATGTCCATTGGAAT 427
||||||||||| ||| ||||||||||||||| ||||||| ||||||||| ||||||||||
Sbjct 362 CAACCTTCTCCAAGCCGACTCCAAGAACATATCTCAGTACGCAATCATGGCCATTGGAAT 421
Query 428 ACAAGTAGAAGCTCATCAGTTCGATCCC-GTGGCTTCAAAGCTTGCTTGGGAACAAGTAT 486
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||
Sbjct 422 GCAAGTAGAAGCTCATCAGTTCGA-CCCAGTGGCTTCAAAGCTTGCTTGGGAACAATTAT 480
Query 487 TCAAGTTCAACTATGGCTTGAACACAGACCAAGCCGTTGTTGCAGAAGAAGAAGCTAAGT 546
|||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCAAGTCCATCTACGGCTTGACCACAGACCAAGCCGTTGTTGCAGAAGAAGAAGCTAAGT 540
Query 547 TAGCCAAGGTCCTTGATGTCTACGAGGCTAGGCTGAAGGAGTTCAAGTATTTGGCTGGTG 606
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 541 TAGCCAAGGTCCTTGATGTCTACGAGGCTAGGTTGAAGGAGTTCAAGTACTTGGCTGGTG 600
Query 607 AAACTTTCACTTTGACCGATCTTCACCACATTCCCGTGATTCAATACCTGCTCGGAACTC 666
| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 ACACTTTCACTTTGACTGATCTTCACCACATTCCCGCGATTCAATACCTGCTCGGAACTC 660
Query 667 CCACCAAGAAGCTCTTCACGGAGCGTCCACGTGTCAACGAGTGGGTGGCTGAGATCACCA 726
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCACCAAGAAGCTCTTCACCGAGCGTCCACGTGTCAACGAGTGGGTGGCTGAGATCACCA 720
Query 727 AGAGGCCAGCTTCAGAGAAGGTTCTGTGAGAAATTTCTAAAAGGACAAAAGTGGTTTTGC 786
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 721 AGAGGCCAGCTTCAGAGAAGGTTCTGTGAGAAATTTCTAAAAGGAAAAAA-TGGTTTTGC 779
Query 787 TTCAGTCACAGTAATAATGCT-ACAAGTAAATAAGCGTCTGCCTCATTGCCCAGTTTCTC 845
||||||||||||||||||||| | || |||||||||| || |||||||||||| ||||||
Sbjct 780 TTCAGTCACAGTAATAATGCTTA-AATTAAATAAGCGGCTACCTCATTGCCCAATTTCTC 838
Query 846 AGTACTTTCTTTCTGTTGTATCCTCTGTTTTTGTTTCAGCTTATGTGAGTGTGTGTACGT 905
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 839 AGTATTTTCTTTCTGTTGTATCCTCTGTTTTTGTTTCAG-TTATGTGAGTGTGTGTATGT 897
Query 906 TCTTGAGAGTATCTTAGGCAAAAACTATATAT 937
||||||||||||||| |||||||||||| |||
Sbjct 898 TCTTGAGAGTATCTTTGGCAAAAACTATTTAT 929
> Ahg484202 jgi|Araly1|484202|fgenesh2_kg.5__194__AT4G02520.1
Length=931
Score = 1194 bits (646), Expect = 0.0
Identities = 703/731 (96%), Gaps = 2/731 (0%)
Strand=Plus/Plus
Query 39 TTCAACATCAAACATCACATCTCTTTCTCTTTTATCTCTTTTTCTCGGTCTTCAAAGAGT 98
|||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 35 TTCAACATCAGACATCACATCTCTTACTCTTTTGTCTCTTTTTCTCGGTCTTCAAAGAGT 94
Query 99 TTCTTAGTTACCAAATCAATGGCAGGTATCAAAGTTTTCGG-ACACCCAGCTTCCACTTC 157
|||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 95 TTCTTAGTAACCAACTCAATGGCAGGTATCAAAGTTTTCGGAAC-CCCAGCTTCCACTTC 153
Query 158 CACCAGGAGAGTCCTCATCGCCCTCCATGAGAAAAACCTCGACTTTGAGCTCGTTCATGT 217
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 154 AACCAGGAGAGTCCTCATCGCTCTCCACGAGAAAAACCTCGACTTTGAGCTCGTTCATGT 213
Query 218 TGAACTCAAAGACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGGTCA 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 TGAACTCAAAGACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGGTCA 273
Query 278 AGTTCCAGCCTTTGAAGATGGAGACCTCAAGCTCTTCGAATCAAGAGCGATTACTCAGTA 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 AGTTCCAGCCTTTGAAGATGGAGACCTCAAGCTCTTCGAATCAAGAGCGATTACTCAGTA 333
Query 338 CATAGCTCACCGATACGAAAACCAAGGAACCAACCTTCTCCCAGCTGACTCCAAGAACAT 397
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 334 CATAGCTCACCGATACGAAAACCAAGGAACCAACCTTCTCCAAGCTGACTCCAAGAACAT 393
Query 398 AGCTCAGTATGCAATCATGTCCATTGGAATACAAGTAGAAGCTCATCAGTTCGATCCCGT 457
||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 394 AGCTCAGTATGCAATCATGGCCATTGGACTGGAAGTAGAAGCTCATCAGTTCGATCCCGT 453
Query 458 GGCTTCAAAGCTTGCTTGGGAACAAGTATTCAAGTTCAACTATGGCTTGAACACAGACCA 517
||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||||
Sbjct 454 GGCTTCAAAGCTTGCTTGGGAACAAGTATACAAGCTCATCTATGGCTTGACCACAGACCA 513
Query 518 AGCCGTTGTTGCAGAAGAAGAAGCTAAGTTAGCCAAGGTCCTTGATGTCTACGAGGCTAG 577
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 514 AGCCGTTGTTGCAGAAGAAGAAGCTAAGTTGGCCAAGGTCCTTGATGTCTACGAGGCTAG 573
Query 578 GCTGAAGGAGTTCAAGTATTTGGCTGGTGAAACTTTCACTTTGACCGATCTTCACCACAT 637
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 574 GCTCAAGGAGTTCAAGTATTTGGCTGGTGACACTTTCACTTTGACCGATCTTCACCACAT 633
Query 638 TCCCGTGATTCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACGGAGCGTCCACG 697
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 634 TCCCGTGATTCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACCGAGCGTCCACG 693
Query 698 TGTCAACGAGTGGGTGGCTGAGATCACCAAGAGGCCAGCTTCAGAGAAGGTTCTGTGAGA 757
||||||||||||||| |||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 694 TGTCAACGAGTGGGTCGCTGAGATCACCAACAGGCCAGCTTCCCAGAAGGTTCAGTGAGA 753
Query 758 AATTTCTAAAA 768
|||||||||||
Sbjct 754 AATTTCTAAAA 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5