BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02950.1
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484204 jgi|Araly1|484204|fgenesh2_kg.5__196__AT2G02950.1 2085 0.0
Ahg920316 jgi|Araly1|920316|scaffold_101597.1 169 7e-41
> Ahg484204 jgi|Araly1|484204|fgenesh2_kg.5__196__AT2G02950.1
Length=1560
Score = 2085 bits (1129), Expect = 0.0
Identities = 1432/1568 (91%), Gaps = 62/1568 (4%)
Strand=Plus/Plus
Query 71 ATGGTGACACTAACACCATCTTCTGCTAGTACCCCAAAAACATCTTTTGATTTCATGAAG 130
|||||||||||||||||||||||| || || ||||| |||||||||||||||||||||
Sbjct 1 ATGGTGACACTAACACCATCTTCTTCTTCAACTCCAAAGACATCTTTTGATTTCATGAAG 60
Query 131 AATAACAACAGTCACAG---C-A-G--TC-T-CT-AT--GTTTCTTCTTCTTCTTACTTG 178
||||||||||||||||| | | | || | || | |||||||||||||||||||
Sbjct 61 AATAACAACAGTCACAGTCTCTATGTTTCTTCCTCTTCCCCTTCTTCTTCTTCTTACTTG 120
Query 179 AGCAGCAAGGAAGATGCTCTTGTCACGACCAAGAAGCTCATGGAACCAAGCAAAACACTA 238
|||||||||||||||||| || |||| ||||||||||||||||| ||||||||||| |||
Sbjct 121 AGCAGCAAGGAAGATGCTGTTCTCACAACCAAGAAGCTCATGGAGCCAAGCAAAACCCTA 180
Query 239 AACATGAGCAT---TAATCCAAAACAAGAGGAGTTTGGTGATGAGAAGAAAATGGTGAAG 295
||||||||||| || || ||||| | | |||||||| |||||||||||||||||||||
Sbjct 181 AACATGAGCATCAATATTCAAAAAC-A-A-GAGTTTGGCGATGAGAAGAAAATGGTGAAG 237
Query 296 AAAGCTCCTGAAGATCCAGAGATTGGTGTGTTTGGAGCTGAGAAGTACTTCAATGGAGAC 355
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAAGCTACTGAAGATCCAGAGATTGGTGTGTTTGGAGCTGAGAAGTACTTCAATGGAGAC 297
Query 356 ATGGATTCAGACCAAGGTTCTAGTGTTCTGTCTCTGACAAACCCAGAAGTTGAGAGAACC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATGGATTCAGACCAAGGTTCTAGTGTTCTGTCTCTGACAAACCCAGAAGTTGAGAGAACC 357
Query 416 GTCGTCGACTCGAAGCAGAGCGCGAAGAAATCTACTGGTACTCCGAGTGTCCGGTCTGAA 475
||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 358 ATCGTCGATTCGAAGCAGAGCGCGAAGAAATCTACTGGAACCCCGAGTGTCCGGTCTGAA 417
Query 476 TCAAGCTGGAATAGTCAGAGCGTGTTGCTTCAGAACAAACTGGTGAATAGCTGCAACAGT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCAAGCTGGAATAGTCAGAGCGTGTTGCTTCAGAACAAACTGGTGAATAGCTGCAACAGT 477
Query 536 TCCTTCAA-G-GAA-AAGAAGAACAGTAATGGTCAGATTCAAAAGGTGACCAATAATAAG 592
|||||||| | ||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 478 TCCTTCAAGGAGAAGAAGAAGAACAGTAATGGTCAGATTCAAAAGGCGAGCAATAATAAG 537
Query 593 AAGAGTTTTCTCGCAAATTTGGGGTGTAAATGCGCATGCTCTGATGGGGATTCTGTAGAT 652
||||||||||||||||||||||||||||||||||| || ||||||||| |||| ||||||
Sbjct 538 AAGAGTTTTCTCGCAAATTTGGGGTGTAAATGCGCCTGTTCTGATGGGAATTCAGTAGAT 597
Query 653 GTCGAGGAGAAAACCTCGGTCAAGAGAAGCGCTGATCCGAATATCTCTGTTAT--C---- 706
||||| || |||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 598 GTCGACGATAAAATCTCGGTTAAGAGAAGCGCTGATCCGAATATCTCTGTTATCGCAATG 657
Query 707 ------A-C----A--A--TGAGATCTTCTGCGGATATGAACACAGAACTGATCAAGATT 751
| | | | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 658 AGGAAGATCGAAAATCAGGTGAGATCTTCTGTGGATATGAACACAGAACTGATCAAGATT 717
Query 752 CAGAAGCAAGAGGAGTTATCACAGAGGAAGTCTCTTGAAGTTTTTGGATCTCCAGTGGCT 811
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 718 CAGAAGCAAGAAGAGTTATCACAGAGGAAGTCTCTTGAAGTTTTTGGATCTCCTGTAACT 777
Query 812 ATTGAGAAGAAGAGTAGTGTTGTTCAGAAGAAACTACCATTGCCTCCATGGAAATCGAGA 871
|||||||||||||||| |||||||||||||| || || ||||||||||||||||| |||
Sbjct 778 ATTGAGAAGAAGAGTACCGTTGTTCAGAAGAAGCTCCCCTTGCCTCCATGGAAATCAAGA 837
Query 872 ACAGAGGAGGACGACACAAAGAGTGAAGGGAGTGATTCAAGCTCGGATCTTTTCGAGATA 931
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 838 ACAGAGGAGGAAGACACAAAGAGTGAAGGGAGTGATTCAAGCTCGGATCTATTCGAGATA 897
Query 932 GAGGGTCTTACAGGGAACCCTAAACCTTTTCTTACGAGGCAAGGAAGTGATCCAGCTTCA 991
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 898 GAGGGTCTTACAGGGAACCCTAAACCTTTTCTTACGAGGCAAGGAAGTGATCCGGCTTCA 957
Query 992 CCTACGTGTTATGCGCCAAGTGAAGTAAGCGTAGAGTGGAGCATAGTGACAGCAAGTGCA 1051
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 CCTACGTGTTATGCGCCAAGTGAAGTAAGCGTAGAATGGAGCATAGTGACAGCAAGTGCA 1017
Query 1052 GCAGATTTCTCTGTTATGTCAGAATGTGCAACAAGTCCTGTAAGAAGAAACCGACCTACT 1111
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||
Sbjct 1018 GCAGATTTCTCTGTTATGTCAGAATGTGCAACAAGTCCCGTAAGAAGAAACCGATCTTCT 1077
Query 1112 CAGATTCCTCGAATCCCTATTACCGCTAAATCAGCACCGCAGAGACGGAAATCGAGTAGC 1171
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CAGATTCCTAGAATCCCTATTACCGCTAAATCAGCACCGCAGAGACGGAAATCGAGT--- 1134
Query 1172 AGCAGCGGAGGGAATGGTTTCTTGATGAGCTGCAAGAGTCATAAATCTGTTATGGTTTCT 1231
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AGCAGCGGAGGCAGTGGTTTCTTGATGAGCTGCAAGAGTCATAAATCTGTTATGGTTTCT 1194
Query 1232 GGTGATTTAGACAGAAGAAGCAGCATGAACAAGACA-CAACCGAGTTACGTTCCTAGATT 1290
|||||||||||||||||||||||||| || |||||| || |||||||| ||||| |||||
Sbjct 1195 GGTGATTTAGACAGAAGAAGCAGCATCAATAAGACAACA-CCGAGTTATGTTCCCAGATT 1253
Query 1291 CCCAATGGAGACTACTAAACCTAAGAGTTTCGAAACACGAAGAAGGATCAGCAACAGCTC 1350
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CCCAATGGAGACTACTAAATCTAAGAGTTTCGAAACACGAAGAAGGATCAGCAACAGCTC 1313
Query 1351 GATTTCTCACACACAATCATCTCTTCTTTATAGTCAGTGATTGCAAGAAAGTAAAAGAAA 1410
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1314 GATTTCTCACACACAATCATCTCTTCTGTATAGTCAGTGATTGCACTAAAGTAAAAGAAA 1373
Query 1411 AAGATTTCAATCTCTGATCTCTCTTTATCTATAATTTCTACTGAGTGAGAAAGATATGTA 1470
| ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| | ||
Sbjct 1374 ACGATTTCAATCTCTTATCTCTCTTTATCTATAATATCTACCGAGTGAGAAAGATTTATA 1433
Query 1471 AACTTATAATAATGTCTTGTTGAGT-C-----CA---TG--A---TCAAATCAATTTAAA 1516
|||||||| |||||||||||||||| | || || | |||||| ||||| ||
Sbjct 1434 AACTTATA-TAATGTCTTGTTGAGTTCTTGATCACAATGTGAAAATCAAATGAATTTTAA 1492
Query 1517 AGGGTTTCTTAGAGACCTTTTGCACCTAAGAAAAAGTTACTCAAAGAGTGACAAATGATT 1576
|||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||
Sbjct 1493 AGGGTTTCTTAGAGACCTCTTGCACCAAAGAAAAACTTACTCAAAGAGTGAAAAATGATT 1552
Query 1577 GGAGAGTG 1584
|||||||
Sbjct 1553 AGAGAGTG 1560
> Ahg920316 jgi|Araly1|920316|scaffold_101597.1
Length=1382
Score = 169 bits (91), Expect = 7e-41
Identities = 192/237 (81%), Gaps = 21/237 (9%)
Strand=Plus/Plus
Query 293 AAGAAAGCTCCTGAAGATCCAGAGATTGGTGTGTTTGGAGCTGAGAAGTACTTCAATGGA 352
||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 232 AAGAAAGCTTCTGAAGATCTGGAGATCAGTGTGTTTGGAGCTGAGAAGTACTTCAATGGA 291
Query 353 GACATGGATTCAGACCA-AGGTTCTAG--T-GT-TCTGTCTCTGACAAACCCAGAAGTT- 406
|| |||||||| ||||| || | |||| | || ||| |||||| || | |||||||||
Sbjct 292 GATATGGATTCCGACCACAG-TCCTAGACTTGTGTCT-TCTCTGCCAGATCCAGAAGTTC 349
Query 407 -----GAGAGAACCGTCGT-CGACTC-GAAGCAGAGCGCGAAGAAATC-TACTGGTA-CT 457
||||||| | | || | ||| |||||| ||| ||||||| || | | || | ||
Sbjct 350 CAATAGAGAGAATCTTTGTTC--CTCCGAAGCAAAGCTCGAAGAATTCCT-C-GGAAACT 405
Query 458 CCGAGTGTCCGGTCTGAATCAAGCTGGAATAGTCAGAGCGTGTTGCTTCAGAACAAA 514
|||||| | ||||||||||| ||||||||||| |||||| ||||||||||||| |||
Sbjct 406 CCGAGTCTTCGGTCTGAATCTAGCTGGAATAGCCAGAGCTTGTTGCTTCAGAATAAA 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59649323670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5