BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02955.1
Length=2444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896256 jgi|Araly1|896256|Al_scaffold_0005_222 1652 0.0
Ahg943611 jgi|Araly1|943611|scaffold_604155.1 411 2e-113
> Ahg896256 jgi|Araly1|896256|Al_scaffold_0005_222
Length=2097
Score = 1652 bits (894), Expect = 0.0
Identities = 1113/1220 (91%), Gaps = 9/1220 (1%)
Strand=Plus/Plus
Query 140 ATGATCTGCACG-GAGTGCGAAAACGACGCCTTTGACGAAGAAGACGACGGATATTACTA 198
||| |||||| | |||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGCTCTGCA-GAGAGTGCGACAACGACGCCTTTGACGAAGAAGACGACGGATATTTCTA 59
Query 199 CTGCCAACGATGCGGTGTTCAGGTTGAAAATCTGATCCAAACCGGCGTCGACGACGGCGA 258
|||| ||||||| |||||||||| |||| |||| |||||||||||||||||||| |||||
Sbjct 60 CTGCAAACGATGTGGTGTTCAGGCTGAAGATCTTATCCAAACCGGCGTCGACGATGGCGA 119
Query 259 TTTAATCGGTGAAGGTGGAGGTACTCAGGGCGCTCTGTATAACCCCAAACATCGCCGGAC 318
||||||||||||||||||||||||||| ||||| | ||| |||||| | ||||||| ||
Sbjct 120 TTTAATCGGTGAAGGTGGAGGTACTCACGGCGCAATATATGACCCCAGATATCGCCGTAC 179
Query 319 TGA-ACCACAACCAATCACTCCTTCACAGCCTCGTTTTACAGATGACACAAGCCGTTACT 377
| | | |||||||| ||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 180 T-ATAACACAACCAGTCACTCCTTCACAGCCTCGTTACACAGATGACACAATACGTTACA 238
Query 378 CTCAGTTTAAATCTCAGTTTGAATCTGAAAACG-G--GAATAAGGAATTGCCCCGGGAAG 434
|||| |||||||||||| |||||||||||| || | ||| ||||| |||||| | ||||
Sbjct 239 CTCATTTTAAATCTCAGCTTGAATCTGAAATCGAGAAGAAGAAGGATTTGCCCAGTGAAG 298
Query 435 TGAAGAGAGCGCCTGACAGTTATGTCGATAAAGAGCCAACGGAGCCTGTGGATTTTGCAG 494
||||||||| |||||| | |||| |||| |||||||||||||||||||||||||||| ||
Sbjct 299 TGAAGAGAGAGCCTGAGATTTATCTCGAGAAAGAGCCAACGGAGCCTGTGGATTTTGGAG 358
Query 495 CAGAGACTTTGAGTTATGAGAATTATTACGATGAAGCAAGAGATAGATATGTTAAAGCTT 554
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 359 CAGAGACTTTAAGTTATGAGGATTATTACGATGAAGCAAGAGATAGATATGTTAAAGCTT 418
Query 555 TTCTTATGATGATCACTTATCAGTGTGATGCTTTGGTTGACAAGTTTAATGTCACTCCTT 614
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTCTTATGATGATTACTTATCAGTGTGATGCTTTGGTTGACAAGTTTAATGTCACTCCTT 478
Query 615 TGATTATTGGTTTGGTTGGACCTATCTCTTTGCGTTATGTGGCTCTCTCTGGCGTCTACC 674
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 479 TGATTATTGGTTTGGTTGGACCTATCTCTTTACGTTACGTGGCTCTCTCTGGCGTTTACG 538
Query 675 ATAAAGATTGGGCCAATAACGCCATTCGTGATTCCGAGCATCAGTCAGAAGATGGTGAAG 734
|| | |||||||| |||| ||||||||||||||||| | ||| ||||||||||||||||
Sbjct 539 ATGATGATTGGGCGGATAAAGCCATTCGTGATTCCGAACTTCAATCAGAAGATGGTGAAG 598
Query 735 TAAAAGATGCTAAGAGGCTTAAAAGACACAAAGCTGAGCCGCGTAACATAGATGGTAAAA 794
|||||||||||||| ||| ||||| ||| ||||| ||||| |||||| ||||||||||||
Sbjct 599 TAAAAGATGCTAAGCGGCCTAAAACACAGAAAGCCGAGCCTCGTAACTTAGATGGTAAAA 658
Query 795 GAGCAGTGACGATATGGTTTGGTATACTTAAAAAGACTATGCCTTTATCGAGTTCTTTGG 854
||||||||||||||||| || || | |||||||||||| |||||||||||||||||||||
Sbjct 659 GAGCAGTGACGATATGGGTTAGTCTGCTTAAAAAGACTCTGCCTTTATCGAGTTCTTTGG 718
Query 855 TGATATCTTTCCTTGCTTGTCACCAAGCGGGAGCGCCTGTTCTACCCACGGATATTGTGA 914
||||||||| |||||||||||||| |||||||| || |||||||| |||||||||||||
Sbjct 719 CGATATCTTTTCTTGCTTGTCACCATGCGGGAGCACCGGTTCTACCAACGGATATTGTGA 778
Query 915 GATGGGCACGAGAAGGAAAGCTTCCGTATTTGTCTTGTTTTCTCGATATTAGAGAGCAAA 974
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 779 GATGGGCACGAGAAGGAAAGCTTCCGTATTTGTCTTGTTTTATCGATATTCGAGAGCAAA 838
Query 975 TGGGAGAGCGATCAGCTGCGTGTCCGGTGAAAGTAAGTATAATGGCTAGGCCTTTTCAGG 1034
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 839 TGGGAGAGCGATCAGCTGCGTGTCCGGTGAAAACAAGCATAATGGCTAGGCCTTTTCAGA 898
Query 1035 TTATTTCTGCTCAGATGTTGGAAGCACGAGCCTCTGTG-ATTGCTGATACTATTGGTTTG 1093
|||||||||||||||||||||||||| ||||| || || |||||||||| ||||||||||
Sbjct 899 TTATTTCTGCTCAGATGTTGGAAGCAGGAGCCGCT-TGCATTGCTGATATTATTGGTTTG 957
Query 1094 CCTTTGCCTCCTGTGAATTTCTATGGTATAGCTTCAAACTATATAAAGCAGTTATCTATT 1153
|||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 958 CCTTTGCCTCCTGTAAATTTCTATGGTATAGCGTCAAACTATATAAAGCGGTTATCTATT 1017
Query 1154 CCTGAGGACAAGATTCTTGATCTGGCGCGTCTTATACAGAACTGGTCATTGCCTCCTGAG 1213
|||||||| ||||||||||| |||| |||||||||||||||||||||| ||||||| ||
Sbjct 1018 CCTGAGGATAAGATTCTTGAACTGGTGCGTCTTATACAGAACTGGTCACTGCCTCCAGAA 1077
Query 1214 TTATATTTATCGACGAATGAGCAGAAGCTTCCTAGCCGTGTGTGTGTCATGTCTATTCTG 1273
|| ||| |||||| |||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 1078 TTGTATCTATCGAAGAATGAGCTGAAGCTTCCTACCCGGGTGTGTGTCATGTCTATTCTT 1137
Query 1274 ATTGTAGCTATTCGGATGCTTTATAACATAAATGGTTTGGGTGTGTGGGAACGGAGTTTG 1333
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATTGTAGCTATACGGATGCTTTATAACATAAATGGTTTGGGTGTGTGGGAACGGAGTTTG 1197
Query 1334 GGGTTTGTCAATGCTAGTGA 1353
| |||||| |||||||||||
Sbjct 1198 GAGTTTGTTAATGCTAGTGA 1217
Score = 1048 bits (567), Expect = 0.0
Identities = 721/789 (91%), Gaps = 36/789 (5%)
Strand=Plus/Plus
Query 1387 GAAAGCAACTGAATTCGATACTC-AGGAGCTTCTGAAGAACCTTGAAGCTAAATATCATG 1445
||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 1311 GAAAGCAACCAAATTCGATAC-CAAGGAGCTTCTGAAGAACCTTGAAGCTAAATATTATG 1369
Query 1446 AGGTCGCTGCAGAAACCCTTGAATCCGAGAAGGATCTGGTGTCATATCTATCGCTCGGGA 1505
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1370 AGGTCGCTGCAGAAACCCTTGAATCCGAGAAGGATCTGCTGTCATATCTATCGCTCGGGA 1429
Query 1506 AAAACGAGTTCTTTGCTGGTTTAGAAGAAGATTCACCTGACGATACATACAGAATTGTTG 1565
|||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||
Sbjct 1430 AAAACGAGTTCTTTGCTGGTTTGGAAGAAGATTTACCTGACGATACATACAGAACTGTTG 1489
Query 1566 ATAACTTGTGGAATGGTTATCCAAAAGACGAGGATATT-GAA---TGT----CT--ACCC 1615
||||| |||||||||||||||||||||| |||||| || ||| ||| || ||||
Sbjct 1490 ATAACCTGTGGAATGGTTATCCAAAAGAGGAGGAT-TTCGAACGGTGTAGGACTCCACCC 1548
Query 1616 AAGAGGGGGAGAGACTGGGACGATGATGTATCACTTAACCAACTTTCATTATACGATAGC 1675
|||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 1549 AAGAGGGGGAGAGACTGGGATGATGATGTATCACTTAACCAACTTTCATTAGAAGATAGC 1608
Query 1676 AGATTTAGCGATGGAAACAATCCTTGTAGTAGCTCTTCAAGGAGAAACGAAAGTGTATCA 1735
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1609 AAATTTAGCGATGGAAACAATCCTTGTAGTAGCCCTTCAAGGAGAAACGAAAGTGTATCA 1668
Query 1736 ATAGG-TCTTGATTTATCTTCTTCAGAACACCGAGAATCATCATCACCAGAGAA-----A 1789
|| || || |||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1669 AT-GGATCGTGATTTATCTTCTTCAGAACACGGAGAATCATCATCACCAGAGAATCCTCA 1727
Query 1790 T--T-AA-AAGAG--A-T---------AGCGATAAAAAGACTAATTACAGACATGGGAGA 1833
| | || ||||| | | |||||||||||||||||| ||||||||||||||
Sbjct 1728 TCATCAAGAAGAGAAATTAAAGGAAAGAGCGATAAAAAGACTAATAACAGACATGGGAGA 1787
Query 1834 TGACTTGTTCTGTTACATACCACCTCGTGTGAAGGTAAAGAGACTAGACTATCTTCAGTA 1893
| |||||||||||||| ||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1788 TAACTTGTTCTGTTACTTACCACCTCGTGTGAAGGTAAAGAGACTAGATTATCTACAATA 1847
Query 1894 CGTGAGGAAAAAAGAAGATGGAGCATTGATATACGCGGCTCATGCAGATTACTACATTCT 1953
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1848 TGTGAGGAAAAAAGAAGATGGAGCATTGATATACGCGGCTCACGCAGATTACTACATTCT 1907
Query 1954 TTTGCGGGTTTGTGCTAAGGTAGCTGAGATTGATGTGAGGAATATGCATAGAGGTGTGTT 2013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 TTTGCGGGTTTGTGCTAAGGTAGCTGAGATTGATGTGAGGAATATGCATAGAGGTGTGTT 1967
Query 2014 GAGCTTTGAGAGGAGATTGGCTTGGATTGAGAAAAGGATAGATCAGGTTTTGCATCTAAC 2073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 GAGCTTTGAGAGGAGATTGGCTTGGATTGAGAAAAGGATAGATCAGGTTTTGCATCTAAC 2027
Query 2074 TCGACCTCTTATGACATGTAAACACTGTTGTGATGATGGGAATATTGGAGAAGATCAAGA 2133
|| |||| ||||||||||| | ||||||||||||| ||||||| |||||||||||||||
Sbjct 2028 TCCACCTTTTATGACATGTGACCACTGTTGTGATGGTGGGAATGCTGGAGAAGATCAAGA 2087
Query 2134 TGATTGATA 2142
||||| |||
Sbjct 2088 TGATTCATA 2096
> Ahg943611 jgi|Araly1|943611|scaffold_604155.1
Length=1683
Score = 411 bits (222), Expect = 2e-113
Identities = 473/589 (80%), Gaps = 37/589 (6%)
Strand=Plus/Plus
Query 779 AACATAGATGGTAAAAGAGCAGTGACGATATGGTTTGGTATA-CTTAAAAAGACTATGCC 837
||| || |||| ||||||||||| ||||||||||| || | ||||||||| || ||||
Sbjct 457 AACTTATATGGAAAAAGAGCAGTAACGATATGGTTAAGT-CAGCTTAAAAAGTCTCTGCC 515
Query 838 TTTATCGAGTTCTTTGG-TGATATCTTTCCTTGCTTGTCACCAAGCGGGAGCGCCTGTTC 896
||||||| |||||||| | |||||||||||||||||||| |||| ||| |
Sbjct 516 TTTATCGTCTTCTTTGGCT-CTATCTTTCCTTGCTTGTCACAAAGCTGGA--------AC 566
Query 897 TACCCACGGATATTGTGAGATGGGCACGAGAAGGAAAGCTTCCGTAT-TTGTCTTGTTTT 955
|||||||||||| || |||||||||||| |||||||| |||||||| || |||| ||||
Sbjct 567 -ACCCACGGATATAGTTAGATGGGCACGACAAGGAAAGTTTCCGTATCTT-TCTTCTTTT 624
Query 956 CTCGATATTAGAGAGCAAATGGGAGAGC-GATCAGCTGCGTGTCCGGTGAAAGTAAGTAT 1014
||| | ||| |||||||||||||||| | |||||||||||||||| ||| ||||| |
Sbjct 625 CTCAAGATTCGAGAGCAAATGGGAGA-CAGATCAGCTGCGTGTCCTGTGTCTGTAAGCGT 683
Query 1015 AATGGCT-AGGCCTTTTCAGGTTATTTCTGCTCAGATG-TTGGAAGCACGAGCCT-CTGT 1071
|| | | | |||| |||| || |||||||||||| | || ||||| | || | || |
Sbjct 684 GAT-GTTCAAGCCTAGTCAGATTGTTTCTGCTCAGA-GATTAGAAGCTCAAG-TTGCT-T 739
Query 1072 -GATTGCTGATACT-ATTGGTTTGCCTTTGCCTCCTGTGAATTTCTATGGTATAGCTTCA 1129
|||||||||| | || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 740 CCATTGCTGATA-TCATCGGTTTGCCTTTGCCTCCTGTGAATTTCTATGGTATAGCGTCA 798
Query 1130 AACTATATAAAGCAGTTATCTATTCCTGAGGACAAGATTCTTGATCTGG-CGCGTCT-TA 1187
|||||| || ||| ||| |||||||| |||| ||| |||||||||||| | ||||| |
Sbjct 799 AACTATCTAGAGCGGTTGTCTATTCCCAAGGAGAAGGTTCTTGATCTGGTC-CGTCTCT- 856
Query 1188 TACAGAACTGGTCATTGCCT-CCTGAGTTATATTTATCGACGAATGAGCAGAAGCTTCCT 1246
|||| ||||||||| || || || || || ||| |||| | ||| | || | ||||||
Sbjct 857 TACACAACTGGTCAATGTCTTCC-GATTTGTATCTATCAAAGAACGTGCTCAGGCTTCCC 915
Query 1247 AGC-CGTGTGTGTGTCATGTCTATTCTGATTGTAGCTATTCGGATGCTTTATAACATAAA 1305
| | ||||| | ||||||||||||| | || ||||||||||||||||||||||| || ||
Sbjct 916 A-CTCGTGTCTATGTCATGTCTATTATTATCGTAGCTATTCGGATGCTTTATAATATCAA 974
Query 1306 TGGTTTGGGTGTGTGGGAACGGAGTTTGGGGTTTG-TCAATGCTAGTGA 1353
|||||| ||||| ||||||| || ||||| |||| | ||||||||||
Sbjct 975 TGGTTTTGGTGTATGGGAACAAAGCTTGGG-TTTGCTTGATGCTAGTGA 1022
Score = 381 bits (206), Expect = 1e-104
Identities = 280/316 (89%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 1763 CACC-GAGAATCATCATCAC-CAGAGAAATTAAAAGAGATAGCGATAAAAAGACTAATTA 1820
|||| || |||||| ||||| |||||||| || |||| |||||||| ||||||||| |
Sbjct 1328 CACCAGATAATCATAATCACGAAGAGAAATCCAAGGAGAAAGCGATAAGAAGACTAATAA 1387
Query 1821 CAGACATG-GGAGATGACTTGTTCTGTTACATACCACCTCGTGTGAAGGTAAAGAGACTA 1879
|||||||| || || | |||||| |||||||| ||||||||||||||||||||||||
Sbjct 1388 CAGACATGAGG-GACAATTTGTTCCAATACATACCGCCTCGTGTGAAGGTAAAGAGACTA 1446
Query 1880 GACTATCTTCAGTACGTGAGGAAAAAAGAAGATGGAGCATTGATATACGCGGCTCATGCA 1939
||||||||||| || ||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 1447 GACTATCTTCAATATGTGAGGAAAAATGATGATGGAGCATTGATATACGCGGGTCATGCG 1506
Query 1940 GATTACTACATTCTTTTGCGGGTTTGTGCTAAGGTAGCTGAGATTGATGTGAGGAATATG 1999
||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||||
Sbjct 1507 GATTACTACATTCTTTTACGGGTTTGTGCTATGGTCGCTGAGATTGATGCAAGGAATATG 1566
Query 2000 CATAGAGGTGTGTTGAGCTTTGAGAGGAGATTGGCTTGGATTGAGAAAAGGATAGATCAG 2059
|||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 1567 CATAGAAGTGTGTTGAGCTTTGAGAGAAGATTGGCTTGGATCGAGAAAAAGATAGATCAT 1626
Query 2060 GTTTTGCATCTAACTC 2075
||||||||||||||||
Sbjct 1627 GTTTTGCATCTAACTC 1642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92102212410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5