BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02960.5
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484210 jgi|Araly1|484210|fgenesh2_kg.5__202__AT2G02960.4 909 0.0
Ahg323367 jgi|Araly1|323367|fgenesh1_pm.C_scaffold_5000911 141 2e-32
> Ahg484210 jgi|Araly1|484210|fgenesh2_kg.5__202__AT2G02960.4
Length=1296
Score = 909 bits (492), Expect = 0.0
Identities = 550/577 (95%), Gaps = 7/577 (1%)
Strand=Plus/Plus
Query 381 TGTCTCCGGTTAATGCGGAGGTTGAGGAGATGAGATCAGAGTCGCCGGTGGTTAATGATA 440
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
Sbjct 259 TGTCTCCGGTTAATGCGGAGGTTGAGGAGATGAGATCAGAGCCGCCGGTGGTTGATGAGA 318
Query 441 AGGCG-TTAGATATTTCTGATGATGATCATGATGATGAGAATGAACCGCTTATTGTTTCT 499
||||| || ||||| |||||||||| ||| |||||||||||||||||||||||| |||
Sbjct 319 AGGCGATT-GATATATCTGATGATG---ATGGTGATGAGAATGAACCGCTTATTGTCTCT 374
Query 500 G-GTGAATGTCGTATTTGTTCTGATGAGTCTCCTGTTGAGAATCTTGAGAGCCCTTGTGC 558
| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 375 GCG-GAATGTCGTATTTGTTCTGATGAGTCTCCTGTTGAGAATCTTGAGAGTCCTTGTGC 433
Query 559 TTGCAGTGGCAGCCTAAAGTATGCTCATAGAAAATGTGTTCAGCGTTGGTGCAATGAAAA 618
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TTGCAGTGGCAGCTTAAAGTATGCTCATAGAAAATGTGTTCAGCGTTGGTGCAATGAAAA 493
Query 619 GGGAAACATTATATGCGAGATTTGTCACCAGCCTTATCAACCTGGATATACCGCTCCACC 678
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 494 GGGAAACATTATATGCGAGATTTGTCATCAGCCTTACCAGCCTGGATATACCGCTCCACC 553
Query 679 ACCTCCACTTCAGCCTGAAGAAACAACTATTGACATTGGTGGAGGATGGACAATCTCAGG 738
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 554 ACCTCCACTTCAGCCTGAAGAAACAACTATTGACATTGGAGGAGGATGGACAATCTCAGG 613
Query 739 TTTGGATGTGCATGATCCTCGTCTCCTTGCAATTGCTGAAGCTGAACGTCGGTATTTAGA 798
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 614 TTTGGATGTGCATGATCCTCGGCTCCTTGCTATTGCTGAAGCTGAACGTCGGTATTTAGA 673
Query 799 GTCTGAATATGTGGAATATACAGCTTCAAGTGCAAGCGGGGCCGCATTCTGTCGCTCAGC 858
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 674 GTCTGAATATGTTGAATATACAGCTTCAAGTGCCAGCGGGGCTGCATTCTGTCGCTCAGC 733
Query 859 TGCTCTAATATTAATGGCTCTTCTTCTCTTACGACACGCACTGACCATAACAGATGATAC 918
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 734 TGCTCTAATCTTAATGGCTCTTCTTCTCTTACGACACGCACTGACCATAACAGATGATGC 793
Query 919 TGATGGCGAAGAAGACGACCCATCTTCGATACTATCT 955
|||||| ||||||||||||||||||||||||||||||
Sbjct 794 TGATGGAGAAGAAGACGACCCATCTTCGATACTATCT 830
Score = 588 bits (318), Expect = 5e-167
Identities = 403/442 (91%), Gaps = 14/442 (3%)
Strand=Plus/Plus
Query 1062 CTTGTCCTGCTCCGAGCTGCTGGATTTCTTCTTCCATGCTATATCATGGCTTGGGCCATC 1121
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 CTTGTCTTGCTCCGAGCTGCTGGATTTCTTCTTCCATGCTATATCATGGCTTGGGCCATC 890
Query 1122 AGTATTCTACAGCGCCGAAGACAGAGACAGGAAGCTGCAGCTTTGGCTACACAGTTTGCG 1181
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 891 AGTATTCTACAGCGCCGAAGACAAAGACAGGAAGCTGCAGCTTTGGCTACACAGTTTGCA 950
Query 1182 TTGGTGCTTCAGTCAGGGCAGCCTAGAACAGTTCACTTCACGGTATCACCGGGAATATCA 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TTGGTGCTTCAGTCAGGGCAGCCTAGAACAGTTCACTTCACGGTATCACCGGGAATATCA 1010
Query 1242 TCATCCGCCGTGGCTCATGCGACTACATCTACACAACAACAGCATGACGATCCTGTCTGA 1301
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TCATCCCCCATGGCTCATGCGACTACATCTACACAACAACAGCATGACGATCCTGTCTGA 1070
Query 1302 ATTCTGATCTAATGTCACAAGC-ATGGAGCCATTACAAGGTACGATGTAAATCAAATGAA 1360
|||||||||||||| || || | |||||||||||||||||||||| | ||||| ||||||
Sbjct 1071 ATTCTGATCTAATGGCATAA-CTATGGAGCCATTACAAGGTACGAGGGAAATCGAATGAA 1129
Query 1361 GAATTTGGTGTCCGTAAATT--G--T-----ATGAGTAAAGGATTGAAATCATTTGAATT 1411
|| |||| |||| ||||||| | | ||||||||| |||||||||||||||| ||
Sbjct 1130 GAGTTTGATGTCTGTAAATTTAGAATGTTGTATGAGTAAATGATTGAAATCATTTGAGTT 1189
Query 1412 CGTGGAAGGTTAGATCT--TTCATTTTACTTGTAGCCAAAAATGTCAAATAGGTTTTGCA 1469
| ||||| |||| |||| ||| |||||| |||||||||||||||||| ||| ||||| |
Sbjct 1190 CTTGGAATGTTATATCTCATTCTTTTTACCTGTAGCCAAAAATGTCAA-TAGCTTTTGAA 1248
Query 1470 CAAATTTGTAAATTCTGCTTTA 1491
|||||||||| ||| || ||||
Sbjct 1249 CAAATTTGTATATTATGTTTTA 1270
> Ahg323367 jgi|Araly1|323367|fgenesh1_pm.C_scaffold_5000911
Length=879
Score = 141 bits (76), Expect = 2e-32
Identities = 283/379 (75%), Gaps = 30/379 (8%)
Strand=Plus/Plus
Query 537 AGAATCTTGAGAGC-CCTTGTGCTTGCAGTGGCAGCCTAAAGTATGCTCATAGAAAATGT 595
|||| |||||| || ||||||||||| | |||||| | ||||||||||| | || |||
Sbjct 236 AGAACCTTGAG-GCTCCTTGTGCTTGTAATGGCAGTTTGAAGTATGCTCACCGCAAGTGT 294
Query 596 GTTCAGCGTTGGTGCAATGA-AAAGGGAAACATTATATGCGAGATTTGTCACCAGCCTTA 654
|||||||||||||| ||||| ||| || |||| | || || || ||||||||||||||
Sbjct 295 GTTCAGCGTTGGTGTAATGAGAAA-GGCGACATAACCTGTGAAATATGTCACCAGCCTTA 353
Query 655 TCAACCTGGATATACCGCTCCACCACCTCCACTTCAGCCTGAAGAAACAACTA-TTGACA 713
||||||||||||||| || || || ||||| | || | ||| ||||| | || || | |
Sbjct 354 TCAACCTGGATATACAGCACCTCCGCCTCCTCCTC--C-TGATGAAACTA-TAATTCATA 409
Query 714 TTGGTGGAGGAT-GG-ACAATCTCAGGT---TTGGA-T-GTGCATGATCCTCGTC-TCCT 765
| |||| | ||| || | || | || | ||||| | | || ||||| || | | ||
Sbjct 410 TCGGTG-ACGATTGGGAGAA-CGGAGTTCCCTTGGACTTGAGC--GATCCACG-CATTCT 464
Query 766 TGCAATTGCTGAAGCTGAACGTCGGTAT-TTAGA-GTCTGAATATGTGGAATATACAGCT 823
||||| |||| ||| ||||||| | | || || | |||| |||| || ||| | |
Sbjct 465 GGCAATGGCTGCAGCAGAACGTCATT-TCTTGGAAG-CTGACTATGACGAGTATTCTGAG 522
Query 824 TC-AAGTGCAAGCGGGGCCGCATTCTGTCGCTCAGCTGCTCTAATATTAATGGCTCTTCT 882
|| || | ||||||| || || || |||||||| |||||||| || ||||||| ||| |
Sbjct 523 TCTAACT-CAAGCGGAGCTGCCTTTTGTCGCTCTGCTGCTCTCATCCTAATGGCACTT-T 580
Query 883 T-CTCTTACGACACGCACT 900
| || |||||| | |||||
Sbjct 581 TGCTGTTACGAGATGCACT 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5