BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02970.1
Length=2275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936076 jgi|Araly1|936076|scaffold_500267.1 2704 0.0
Ahg911216 jgi|Araly1|911216|Al_scaffold_0001_1470 869 0.0
Ahg471586 jgi|Araly1|471586|fgenesh2_kg.1__1540__AT1G14240.2 675 0.0
> Ahg936076 jgi|Araly1|936076|scaffold_500267.1
Length=1703
Score = 2704 bits (1464), Expect = 0.0
Identities = 1634/1715 (95%), Gaps = 16/1715 (1%)
Strand=Plus/Plus
Query 262 GTGGCGGTTTTTGAATTGTTGATGCGACGATCTCATGCCCGTTCTAGGGTGAAGAATAGT 321
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GTGGCGGTTTCTGAATTGTTGATGCGACGATCTCATGCCCGTTCTAGGGTGAAG----G- 55
Query 322 AGTAGTAGTAAATCCGATATGGATCCGATTAAGTTCCAGATCCGTTCTGGGAACCGAGCA 381
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 A-TAGTAGTAAAACCGATATGGATCCGATTAAGTTCCAGATCCGTTCTGGGAACCGAGCA 114
Query 382 CCGTCTTCTTCATCGACCTATACGCTAACAAAACCGAATTCGAAACACGCGAAATCGAAT 441
||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||||
Sbjct 115 TCGTCTTCTTCATCGACCTACACGCTAACGAAGTCGAATTCAAAACACGCGAAATCGAAT 174
Query 442 CTCTTGTTAACAGTTGGTTCTATATCTGTAGTGTTGGGGGTTCTCTTTCT-TTGCTATTC 500
||| ||||||| |||| |||||||||| ||||||| ||| |||||||||| || ||||||
Sbjct 175 CTCATGTTAACCGTTGCTTCTATATCTATAGTGTTTGGGTTTCTCTTTCTATT-CTATTC 233
Query 501 AATTTTGTTCTCCGGCGGTAATCTGAGAGGATCGCTTCGTTATAGCGTCGTGATCGACGG 560
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 AATTTTGTTCTCCGGTGGTAATCTGAGAGGATCGCTTCGTTATAGCGTCGTGATCGACGG 293
Query 561 CGGAAGTACAGGGACACGAATCCATGTGTTTGGGTACCGGATTGAGTCGGGTAAACCGGT 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TGGAAGTACAGGGACACGAATCCATGTGTTTGGGTACCGGATTGAGTCGGGTAAACCGGT 353
Query 621 TTTTGAATTCAGAGGAGCGAATTACGCTAGTTTGAAGTTGCATCCGGGTTTATCGGCGTT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TTTTGAATTCAGAGGAGCGAATTACGCTAGTTTGAAGTTGCATCCGGGTTTATCGGCGTT 413
Query 681 TGCTGATGATCCTGATGGAGCGAGTGTGTCATTGACGGAGCTGGTTGAGTTTGCGAAAGG 740
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 414 TGCTGATGATCCTGATGGAGCGAGTGTGTCATTGACGGAGCTTGTGGAGTTTGCGAAAGG 473
Query 741 GAG-AGTTCCGAAAGGAATGTGGATTGAGACTGAAGTTAGGTTAATGGCGACGGCGGGAA 799
||| | ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 474 GAGGA-TTCCGAAAGGAATGTGGATGGAGACTGAAGTTAGGTTAATGGCCACGGCGGGAA 532
Query 800 TGAGATTGCTTGAATTACCTGTTCAGGAAAAGATTCTGGGAGTTGCAAGAAGAGTTCTTA 859
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 533 TGAGATTGCTTGAATTACCTGTTCAGGAGAAGATTCTGGGAGTTGCTAGAAGAGTTCTTA 592
Query 860 AATCTTCTGGGTTCTTGTTTCGAGATGAATGGGCTTCTGTTATCTCTGGATCTGACGAGG 919
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 593 AATCTTCTGGGTTCTTGTTTCGAGATGAATGGGCTTCTGTTATCTCTGGATCTGACGAAG 652
Query 920 GTGTATATGCTTGGGTTGTTGCAAACTTTGCTCTCGGTTCACTTGGAGGTGATCCTCTTA 979
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 653 GTGTATATGCTTGGGTTGTTGCAAACTTTGCTCTCGGTTCACTTGGCGCTGATCCTCTTA 712
Query 980 AAACAACCGGAATTGTTGAACTTGGCGGGGCTTCTGCTCAGGTGACATTTGTGTCTAGTG 1039
|||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 713 AAACAACCGGAATTGTTGAACTCGGCGGGGCTTCTGCTCAGGTGACATTTGTGCCAAGTG 772
Query 1040 AGCCAATGCCTCCTGAGTTCTCACGTACAATATCATTTGGAAATGTCACATACAATCTCT 1099
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 773 AGCCAATGCCTCCTGAGTTCTCACGTACAATATCATTTGGAAATGTTTCATACAATCTCT 832
Query 1100 ACAGTCACAGCTTCCTTCATTTTGGGCAGAATGCTGCACATGATAAGTTATGGGGTTCAC 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 ACAGTCACAGCTTCCTTCATTTTGGGCAGAATGCTGCACATGATAAGTTATGGGGTTCAC 892
Query 1160 TTCTCTCAAGAGACCATAATTCAGCTGTGGAACCTACACGGGAAAAAATATTTACAGACC 1219
|||||| ||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||
Sbjct 893 TTCTCTTAAGAGACCATAATCCAGCTATGGAACCTACACGGGAACAAATCTTTACAGACC 952
Query 1220 CTTGTGCTCCAAAAGGGTATAACCTCGACGCAAACACACAAAAGCATTTGTCTGGACTTT 1279
|||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 953 CTTGTGCTCCAAGAGGGTATAACCTCGACGCAAACACACAGAAGCATTTATCTGGACTTT 1012
Query 1280 TAGCTGAAGAAAGCAGACTCTCAGATTCTTTTCAAGCTGGGGGTAATTACTCACAGTGTC 1339
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TAGCTGAAGAAAGCAGAATCTCAGATTCTTTTCAAGCTGGGGGTAATTACTCACAGTGTC 1072
Query 1340 GATCTGCTGCACTAACA-ATCTTGCAAGATGGAAATGAGAAATGCTCGTATCAGCATTGT 1398
||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1073 GATCTGCTGCACTAA-ATATCTTGCAAGAAGGAAATGAGAAATGCTCGTATCAGCATTGT 1131
Query 1399 TCTATTGGATCAACTTTCACGCCTAAGCTTCGAGGAAGATTTTTAGCGACAGAAAACTTC 1458
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1132 TCTATTGGATCAACTTTCACGCCTAAGCTTCGAGGAAGATTTTTAGCTACAGAAAACTTC 1191
Query 1459 TTTTACACCTCTAAGTTCTTTGGGTTGGGAGAAAAAGCGTGGCTATCTAATATGATTTCA 1518
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1192 TTTTACACCTCTAAGTTCTTTGGGTTGGGAGAAAAGGCGTGGCTGTCTAATATGATTTCA 1251
Query 1519 GCCGGAGAGAGATTCTGTGGAGAAGATTGGTCAAAGTTGAGAGTAAAAGACCCATCACTC 1578
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1252 GCCGGAGAGAGATTCTGTGGAGAAGATTGGTCGAAGTTGAGAGTAAAAGACCCATCACTC 1311
Query 1579 CATGAAGAGGATCTTCTTCGGTATTGTTTCTCATCTGCATATATTGTGTCATTGCTTCAC 1638
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 GATAAAGAGGATCTTCTTCGGTATTGTTTCTCATCTGCATATATTGTGTCATTGCTTCAC 1371
Query 1639 GATACCCTTGGCATTCCTCTTGATGATGAAAGAATCGGATATGCGAATCAAGCAGGAGAC 1698
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1372 GATACATTTGGCATTCCTCTTGATGATGAAAGAATCGGATTTGCGAATCAAGCAGGAGAT 1431
Query 1699 ATACCGCTCGATTGGGCTTTAGGTGCATTCATTCAACAGACTGCAACAGAGACCTCTCAA 1758
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1432 ATACCGCTCGATTGGGCTTTAGGTGCATTCATTCTACAGACTGCAACAGAGACCTCTCAA 1491
Query 1759 CATGCAGCCTCTGGTAATCTCCATTGGTTCCATGCTCTTTTCAGTAATCACCCGAAGAC- 1817
||| || |||||| ||| |||||||||||||||||||| |||||| || || ||||| |
Sbjct 1492 CATTCATCCTCTGATAACCTCCATTGGTTCCATGCTCTGTTCAGTCATGACTCGAAG-CT 1550
Query 1818 GCTTCACTATCTCATCGGGATACCGATCCTTATGACAGTTTTGGTATATTTGGTAACTAA 1877
|||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1551 GCTTCACTATGTCATCGGGATACCAATCCTTATGACAGCTTTGGTATATTTGGTAACTAA 1610
Query 1878 GTGGAGAAAACCGCAGCTGAAAACGATTTACGACCTTGAGAAAGGTCGGTACATAGTGAC 1937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1611 GTGGAGAAAACCGCAGCTGAAAACGATTTACGACCTTGAGAAAGGTCGGTACATAGTCAC 1670
Query 1938 TCGAATTAGATGATCTTGGTTTATAAACCGGTTTT 1972
||| ||||||||||||||||||| || ||| ||||
Sbjct 1671 TCGGATTAGATGATCTTGGTTTA-AACCCG-TTTT 1703
> Ahg911216 jgi|Araly1|911216|Al_scaffold_0001_1470
Length=1515
Score = 869 bits (470), Expect = 0.0
Identities = 1016/1272 (80%), Gaps = 67/1272 (5%)
Strand=Plus/Plus
Query 485 TCTTTCTTTGCTATTCAATTTTGTTCTCCGG-CGGTAATCTGAGAGGATCGCTTCGTTAT 543
||||| |||||||||||||||| |||||| || |||| ||||| ||||| || ||
Sbjct 185 TCTTTGTTTGCTATTCAATTTTACGCTCCGGAAGG-AATCGGAGAGTTTCGCTCCGGTAC 243
Query 544 AGCGTCGTGATCGACGGCGGAAGTACAGGGACACGAATCCATGTGTTTGGGTACCGGATT 603
|||||| | ||||| ||||| ||| ||||||| ||| | |||||||| ||||||||||||
Sbjct 244 AGCGTCATAATCGATGGCGGGAGTTCAGGGACCCGAGTTCATGTGTTCGGGTACCGGATT 303
Query 604 GAGTCGGGTAAACCGGTTTTTGAATTC--AGAGGAGCGAATTACGCTAGTTTGAAGTTGC 661
|| || |||||||||||||| || ||| |||||| || ||| | |||||||||||||
Sbjct 304 GAATCCGGTAAACCGGTTTTCGATTTCGGAGAGGA--GAGTTATGGTAGTTTGAAGTTG- 360
Query 662 A-TCCGGGTTTATCGGCGTTTGCTGATGATCCTGATGGAGCGAGTGTGTCATTGACGGAG 720
| ||| || || || |||| ||||||| |||| || |||| ||||| |||| ||||||||
Sbjct 361 AGTCCTGGATTGTCTGCGTATGCTGATAATCCGGAGGGAGTGAGTGAGTCAGTGACGGAG 420
Query 721 CTGGTTGAGTTTGCGAAAG-GGAGAGTTCCGAAAGGAATGTGGATTG-AGACTGA-AGTT 777
|| || || |||||| ||| ||||||||| || |||| || || | ||| ||| | ||
Sbjct 421 CTTGTGGAATTTGCG-AAGAAGAGAGTTCCCAAGGGAAAGTTGA-AGAAGAGTGACA-TT 477
Query 778 AGGTTAATGGCGACGGCGGGAATGAGATTGCTTGAATTACCTGTTCAGGAAAAGATTCTG 837
||||||||||| || || |||||||||||||||||||| |||||||| ||| |||||||
Sbjct 478 AGGTTAATGGCTACTGCTGGAATGAGATTGCTTGAATTGCCTGTTCAAGAACAGATTCT- 536
Query 838 GGA-GTTGCAAGAAGAGTTCTTAAATCTTCTGGGTTCTTG--TTTCGAGATGAATGGGCT 894
| ||| | ||||||||||||| |||||||||| | ||| |||||||| |||||||||
Sbjct 537 TCATGTTACTAGAAGAGTTCTTAGATCTTCTGGG-T-TTGAATTTCGAGAGGAATGGGCT 594
Query 895 TCTGTTATCTCTGGATCTGACGAGGGTGTATATGCTTGGGTTGTTGCAAACTTTGCTCTC 954
|||||||||||||||||||| || ||||||||||||||||||||||| ||| ||| |||
Sbjct 595 TCTGTTATCTCTGGATCTGATGAAGGTGTATATGCTTGGGTTGTTGCTAACCATGCACTC 654
Query 955 GGTTCACTTGGAGGTGATCCTCTT-AAAACAACCGGAATTGTTGAACTTGGCGGGGCTTC 1013
||||| ||||||||||| ||| || |||||||| |||||||||||||| || ||||||||
Sbjct 655 GGTTCGCTTGGAGGTGAACCT-TTGAAAACAACTGGAATTGTTGAACTCGGTGGGGCTTC 713
Query 1014 TGCTCAGGTGACATTTGTGTCTAGTGAGCCAATGCCTCCTGAGTTCTCACGTACAATATC 1073
| | |||||||||||||| || ||||||| ||||| |||||||||| ||| | ||
Sbjct 714 TACCCAGGTGACATTTGTATCAAGTGAGCTTGTGCCTTCTGAGTTCTCGCGTTCGTTAG- 772
Query 1074 ATT-TGGAAATGTCACATACAATCTCTACAGTCACAGCTTCCTTC-ATTTTGGGCAGAAT 1131
| | |||||||||| |||||||||||||||||||||||||||| | ||||||| ||| ||
Sbjct 773 ACTATGGAAATGTCTCATACAATCTCTACAGTCACAGCTTCCT-CGATTTTGGACAGGAT 831
Query 1132 GCT-GCACATGATAAGTTATGGGGTTCACTTCTCT-CAAGAGACCATAATTCAGCTGTGG 1189
| | ||||| || ||||||| || | ||| || || | || | | ||||||
Sbjct 832 G-TAGCACAAGAAAAGTTATCGGA---A-TTC-CTACAC-A-AC--TCAG-CAGCTGCA- 879
Query 1190 AAC-CTACACGGGAAAAAATATTTACAGACCCTTGTGCTCCAAAAGGGTATAACCTCGAC 1248
||| ||||| ||||| |||| || | ||||||||| ||||||||||||||| ||| |
Sbjct 880 AACTCTACAGGGGAAGGAATAGTTCCTGACCCTTGTACTCCAAAAGGGTATATCCTTAAA 939
Query 1249 GCAAACACACAAAA-GCATTTGTCTGGACTT-TTAGCTGAAGAAAGCAGACTCTC-AGAT 1305
|||| |||||| | | || ||||| || || ||||| |||| | | | | ||
Sbjct 940 ACAAATTTACAAAAAG-ACTTACCTGGA-TTCTTGGCTGAT-AAAGGAAAATTTATAGCC 996
Query 1306 TCTTTTCAAGCTGGGGGTAATTACTCACAGTGTCGATCTGCTGCACTAACAATCTTGCAA 1365
| ||||||||| ||||||| |||| ||||||||||||||||| | | || |||||
Sbjct 997 ACCCTTCAAGCTGCTGGTAATTTCTCAGAGTGTCGATCTGCTGCATTTGCCATGTTGCAG 1056
Query 1366 GATGGAAATGAGAAATGCT-CGTATCAGCATTGTTCTATTGGATCAACT-TTCACGCCTA 1423
|| ||||| | |||||| | | ||| ||||||||||||||||||||| | ||||| ||||
Sbjct 1057 GAAGGAAAAGGGAAATG-TACTTATAAGCATTGTTCTATTGGATCAA-TATTCACACCTA 1114
Query 1424 AGCTTCGAGGAAGATTTTTAGCGACAGAAAACTTCTTTTACACCTCTAAGTTCTTTGGGT 1483
| |||| |||||| ||||| || || || || ||||| ||||||| |||||||||||||
Sbjct 1115 ATCTTCAAGGAAGTTTTTTGGCTACGGAGAATTTCTTCCACACCTCCAAGTTCTTTGGGT 1174
Query 1484 TGGGAGAAAAAGCGTGGCTATCT-AATATGATTTCAGCCGGAGAGAGATTCTGTGGAGAA 1542
|||||||||||| ||||| ||| || ||||||| |||||| | |||||||||||||||
Sbjct 1175 TGGGAGAAAAAGATTGGCTGTCTGAA-ATGATTTTGGCCGGAAATAGATTCTGTGGAGAA 1233
Query 1543 GATTGGTC-AAAGTTGAGAGTAAAAGACCCATCACTCCATGAAGAGGATCTT-CTTCGGT 1600
|||||||| ||| |||| ||| ||| | ||| || | | || ||| || || |||||||
Sbjct 1234 GATTGGTCGAAA-TTGAAAGTGAAATATCCAACATTTAAGGACGAGAAT-TTGCTTCGGT 1291
Query 1601 ATTGTTTCTCATCTGCATATATTGTGTCATTGCTTCACGATACCCTTGGCATTCCTCTTG 1660
||||||||||||| ||||||||| | ||| ||||||| |||| ||||| || ||||||
Sbjct 1292 ATTGTTTCTCATCAGCATATATTATATCAATGCTTCATGATAGTCTTGGTGTTGCTCTTG 1351
Query 1661 ATGATGAAAGAATCG-GATATGCGAA-TCAAGC---AG--GA-GACATACCGCTCGATTG 1712
|||| ||||||||| | ||||| || | |||| || || |||||||| || |||||
Sbjct 1352 ATGACGAAAGAATCAAG-TATGC-AAGTAAAGCCGGAGACGACGACATACCACTAGATTG 1409
Query 1713 GGCTTTAGGTGC 1724
||| || |||||
Sbjct 1410 GGCATTGGGTGC 1421
> Ahg471586 jgi|Araly1|471586|fgenesh2_kg.1__1540__AT1G14240.2
Length=1690
Score = 675 bits (365), Expect = 0.0
Identities = 930/1194 (78%), Gaps = 73/1194 (6%)
Strand=Plus/Plus
Query 533 CGCTTCGTTATAGCGTCGTGATCGACGGCGGAAGTACAGGGACACGAATCCATGTGTTTG 592
|||| || || |||||| | ||||| | ||| ||| ||||||| ||| | |||||||| |
Sbjct 257 CGCTCCGGTACAGCGTCATTATCGATGCCGGGAGTTCAGGGACCCGAGTTCATGTGTTCG 316
Query 593 GGTACCGGATTGAGT-CGGGTAAACCGGTTTTTGAATTCAGAGGAGCGA-ATTACGCTAG 650
||||| || |||||| |||| ||||| ||||| || ||| || ||| | |||||||||
Sbjct 317 GGTACTGGTTTGAGTCCGGG-AAACCCGTTTTCGATTTCGGA-GAGAAACATTACGCTAA 374
Query 651 TTTGAAGTTGCA-TCCGGGTTTATCGGCGTTTGCTGATGATCCTGATGGAGCGAGTGTGT 709
| |||||||| | ||| ||||| ||||||| ||||||| |||| || ||||| || ||||
Sbjct 375 TCTGAAGTTG-ACTCCTGGTTTGTCGGCGTATGCTGATAATCCGGAGGGAGCAAGCGTGT 433
Query 710 CATTGACGGAGCTGGTTGAGTTTGCGAAAG-GGAGAGTTCCGAAAG-GAATGTGGATTG- 766
|| ||||| |||| || || || || ||| |||| |||| | | |||||| || |
Sbjct 434 CAGTGACGAAGCTTGTGGAATTCGC-CAAGAAGAGAATTCC-CACGAGAATGTTGA-GGA 490
Query 767 AGACTGA-AGTTAGGTTAATGGCGACGGC-GGGAATGAGATTGCTTGAATTACCTGTTCA 824
| | ||| | |||||||||||||||| || ||| ||||||||||||||| | ||||||||
Sbjct 491 AAAGTGACA-TTAGGTTAATGGCGACAGCTGGG-ATGAGATTGCTTGAAGTGCCTGTTCA 548
Query 825 GGAAAAGATTCTGGGA-GTTGCAAGAAGAGTTCTTAAATCTTCTGGGTTCT-TGTTTCGA 882
||| ||||||| || ||| ||||||||||||||| |||||||||||| | ||||||||
Sbjct 549 AGAACAGATTCT-TGATGTTACAAGAAGAGTTCTTAGATCTTCTGGGTT-TATGTTTCGA 606
Query 883 GATGAATGGGCTTCTGTTATCTCTGGATCTGACGAGGGTGTATATGCTTGGGTTGTTGCA 942
|| ||||||||||||||||||||||||||||| || ||| ||||||||||| || ||||
Sbjct 607 GACGAATGGGCTTCTGTTATCTCTGGATCTGATGAAGGTATATATGCTTGGATTATTGCC 666
Query 943 AACTTT-GCTCTCGGTTCACTTGGAGGTGATCCTCTTA-AAACAACCGGAATTGTTGAAC 1000
|| || || |||||||| |||||| |||||| || ||||||| || ||||||||||
Sbjct 667 AA-TTACGCACTCGGTTCGCTTGGAACTGATCCG-TTGGAAACAACGGGGATTGTTGAAC 724
Query 1001 TTGGCGGGGCTTCTGCTCAGGTGACATTTGTGTCTAGTGAGCCAATGCCTCCTGAGTTCT 1060
| |||||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 725 TCGGCGGGGCTTCTGCCCAGGTGACATTTGTGTCAAGTGAGCTTGTGCCTTCTGAGTTCT 784
Query 1061 CACGTACAATATCATTTGGAAATGTCACATACA-ATCTCTACAGTCACAGCTTCCTTCAT 1119
| ||||| ||||| | ||||||||| |||||| | ||||||||||||| ||||| ||
Sbjct 785 CGCGTACCATATCCTATGGAAATGTTTCATACACAA-TCTACAGTCACAGTTTCCT-CAA 842
Query 1120 TT-TGGGCAGAATGCTGCACATGATAAG-TTATGGGGTTCACTTCTCTCAAGAGACCATA 1177
|| |||| || |||| |||| | | ||| |||| || |||| | | || | || |
Sbjct 843 TTATGGGAAGGATGCAGCAC-TAAAAAGGTTATTGGAAACACT-C-C--AA-A-AC--T- 892
Query 1178 ATTCAGCTGTGGAAC-CTACACGGGAAAAAATATTT-ACAGACCCTTGTGCTCCAAAAGG 1235
||||| ||| ||||| |||| |||| || | |||||||||| |||| |||||
Sbjct 893 ---CAGCT----AACTCTACAGGGGAGGGAATAGTTGA-AGACCCTTGTACTCCTAAAGG 944
Query 1236 GTATAACCT-CGACGCAAACACACA-AAAGCATTTGTCTGGACTT-TTAGCTGAAGAAAG 1292
||| | | | |||| |||| || | ||| ||| || ||| || |||||||| |||||
Sbjct 945 GTACATC-TACGACACAAATTCAAAGAAAT-ATTCATCCGGA-TTCTTAGCTGATGAAAG 1001
Query 1293 CAGACTCTCAGATTCTTTTCAAGCTGGGGGTAATTACTCACAGTGTCGATCTGCTGCACT 1352
|| | | || || || |||||| ||||||| |||| | || ||||| ||| | |
Sbjct 1002 CAAATTAAAAGGCTCCCTTGAAGCTGCTGGTAATTTCTCAAAATGCCGATCCGCTACGTT 1061
Query 1353 AACAATCTTGCAAGATGGAAATGAGAAATGCTCG-TATCAGCATTGTTCTATTGGATCAA 1411
|| | |||||||| ||||| ||||| || || ||| |||||||||||||||||||||
Sbjct 1062 TGCACTTTTGCAAGAAGGAAAAGAGAACTG-TCAATATGAGCATTGTTCTATTGGATCAA 1120
Query 1412 CTTTCACGCCTAAGCTTCGAGGAAGATTTTTAGCGACAGAAAACTTCTTTTACACCTCTA 1471
| ||||| ||| | |||| ||| || ||||| || ||| ||| |||| |||||| | |
Sbjct 1121 CATTCACACCTGATCTTCAAGGGAGTTTTTTGGCTACATCAAATTTCTACTACACCGCCA 1180
Query 1472 AGTTCTTTGGGTTGGGAGAAAAAGCGT-GGCTATCT-AATATGATTTCAGCCGGAGAGAG 1529
||||||||| ||||| |||||| | || || | ||| ||| ||||| |||| ||| ||||
Sbjct 1181 AGTTCTTTGAGTTGGAAGAAAAGG-GTTGGTTGTCTGAAT-TGATTCCAGCTGGAAAGAG 1238
Query 1530 AT-TCTGTGGAGAAGATTGGTC-AAAGTTGAGAGTAAAAGACCCATCA-CTCCATGAAGA 1586
|| | ||||||||||| ||||| ||| | || | | || ||||| || || |||||||
Sbjct 1239 ATAT-TGTGGAGAAGAATGGTCGAAACT-GATATTGGAATACCCAACAACTG-ATGAAGA 1295
Query 1587 GGATCTT-CTTCGG-TATTGTTTCTCATCTGCATATATTGTGTCATTGCTTCACGATACC 1644
|| || | | || ||||| |||||||| ||||||||| | ||| ||||||| ||||
Sbjct 1296 ATAT-TTGCGT-GGCTATTGCTTCTCATCAGCATATATTATCTCAATGCTTCATGATAGT 1353
Query 1645 CTTGGCATTCCTCTTGATGATGAAAGAATCG-GATATGCGAATCAAGCAGGAGA 1697
||||| ||| |||||||||||||||||||| | ||||| ||| ||||||||||
Sbjct 1354 CTTGGTATTGCTCTTGATGATGAAAGAATCACG-TATGCAAATGAAGCAGGAGA 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85664961005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5