BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02980.1
Length=2027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484212 jgi|Araly1|484212|fgenesh2_kg.5__204__AT2G02980.1 2870 0.0
> Ahg484212 jgi|Araly1|484212|fgenesh2_kg.5__204__AT2G02980.1
Length=1951
Score = 2870 bits (1554), Expect = 0.0
Identities = 1804/1926 (94%), Gaps = 12/1926 (1%)
Strand=Plus/Plus
Query 47 GGCTTATCGTTATCCTCAAGATTTGTCAGTTTGAATAATGAGAAGCTCAAAATCAGAGCT 106
||||||||||||||||||||||||| ||| || || || |||||||||||| ||||||||
Sbjct 1 GGCTTATCGTTATCCTCAAGATTTGACAG-TTAAACAACGAGAAGCTCAAATTCAGAGCT 59
Query 107 TTAATGGCGATATCTTCAGCTTCACTAATATCATCATTCTCACACGCAGAAACGTTCACT 166
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 60 TTAATGGCTATATCTTCTGCTTCACTAATATCATCATTCTCACACGCAGAAACTTTTACT 119
Query 167 AAGCATTCGAAAATCGACACTGTGAAT----A--CACAAAACCCGATTCTTCTGATTTCC 220
|| | || |||||||||||||||||| | ||| ||||||||||||||| ||||||
Sbjct 120 AAACCTTTAAAAATCGACACTGTGAATCCGAATCCACCAAACCCGATTCTTCTAATTTCC 179
Query 221 AAATGCAATTCTCTAAGAGAGCTGATGCAAATTCAAGCTTACGCGATCAAATCTCAT-AT 279
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 AAATGCAATTCTGAAAGAGAGCTGATGCAAATTCAAGCTTACGCGATCAAATCTCATCA- 238
Query 280 TGAAGATGTTTCCTTCGTCGCTAAGCTGATAAATTTCTGCACTGAGTCTCCAACGGAGTC 339
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGAAGATGTTTCCTTCAACACTAAGCTGATAAATTTCTGCACTGAGTCTCCAACGGAGTC 298
Query 340 TTCAATGTCATATGCACGCCACTTGTTCGAGGCAATGTCTGAACCAGATATTGTCATTTT 399
|||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 299 TTCAATGTCATACGCACGCCACTTGTTCGACGCAATGTCTGAACCAGATATAGTGATTTT 358
Query 400 TAATTCTATGGCTCGTGGGTATTCTCGCTTCACGAATCCTCTTGAGGTTTTTAGTCTCTT 459
||||||||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 359 TAATTCTATAGCTCGTGGGTATTCTCGCTCCACGAATCCTCTTGAGGTGTTTAATCTCTT 418
Query 460 CGTTGAGATCTTAGAAGATGGTATTTTACCTGACAACTACACTTTCCCGTCTCTTCTCAA 519
|||||||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||
Sbjct 419 CGTTGAGATCTTAGAAGATGATCTTTTACCTGATAACTATACTTTCCCGTCTCTTCTCAA 478
Query 520 AGCTTGTGCAGTAGCAAAGGCGTTAGAAGAAGGTAGACAATTGCATTGTTTGTCGATGAA 579
|||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 479 AGCTTGTGCAGTGGCAAAGGCATTAGAAGAAGGTAGACAATTGCATTGTCTGTCGATGAA 538
Query 580 ACTAGGGCTTGATGATAATGTCTATGTTTGTCCAACGCTTATTAATATGTACACTGAGTG 639
| ||||| ||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 539 ATTAGGGGTTGATGATAATGTATATGTTTGCCCTACGCTTATTAATATGTACACTGAGTG 598
Query 640 TGAAGATGTGGATTCTGCTCGTTGTGTGTTTGATCGGATTGTTGAGCCGTGTGTTGTTTG 699
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 599 TGAAGATGTGGATGCTGCTCGTTGTGTGTTTGATCGGATTGTTGAGCCGTGCGTTGTTTG 658
Query 700 TTATAATGCTATGATCACGGGTTATGCGAGAAGAAACAGACCGAACGAGGCTTTATCTTT 759
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 659 TTATAATGCTATGATCACGGGGTACGCGAGAAGAAACAGACCAAACGAGGCTTTATCTTT 718
Query 760 GTTCCGTGAAATGCAAGGTAAGTACTTGAAGCCGAATGAGATTACCCTTTTGAGTGTTCT 819
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 719 GTTCCGTGAAATGCAAGGTAAGAACTTGAAGCCGAATGAGATTACCCTTTTGAGTGTTCT 778
Query 820 GTCATCTTGTGCTCTGTTGGGATCGTTAGATTTAGGGAAATGGATACATAAGTATGCTAA 879
||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 779 GTCTTCTTGTGCTCTGTTGGGATCGTTAGATCTAGGGAAATGGATACATGAGTATGCTAA 838
Query 880 GAAACATAGTTTCTGTAAGTATGTGAAAGTAAACACAGCTTTGATCGATATGTTTGCGAA 939
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GAAACATGGTTTTTGTAAGTATGTGAAAGTAAACACAGCTTTGATCGATATGTTTGCGAA 898
Query 940 ATGTGGTAGCTTGGATGATGCAGTGTCTATATTCGAAAAAATGAGGTATAAGGATACACA 999
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 899 ATGTGGTAGCTTGGATGATGCAGTGTCTATATTTGAAGATATGAGGTATAAGGATACACA 958
Query 1000 AGCTTGGTCAGCAATGATTGTAGCTTATGCGAATCATGGGA-AAGCTGAGAAATCCATGT 1058
|||||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct 959 AGCTTGGTCAGCGATGATTGTAGCTTATGCGAATCA-CGGACAAGCTGAGAATTCCATGT 1017
Query 1059 TGATGTTTGAGAGAATGAGGTCTGAAAATGTTCAGCCTGATGAGATCACATTTCTCGGTC 1118
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1018 TAATGTTTGAGAGAATGAGATCTGAAAATGTTCAGCCTGATGAGATCACGTTTCTCGGTC 1077
Query 1119 TGTTAAACGCTTGCAGCCACACTGGTCGAGTGGAAGAAGGGAGAAAGTATTTCTCACAGA 1178
|||||||||||||||||||||| |||| |||||||||||| | ||||||||||||| ||
Sbjct 1078 TGTTAAACGCTTGCAGCCACACAGGTCTCGTGGAAGAAGGGCGCAAGTATTTCTCACGGA 1137
Query 1179 TGGTTAGCAAATTTGGGATTGTTCCGAGTATTAAGCATTATGGTTCTATGGTAGATCTTC 1238
|| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGATTAACGAATTTGGGATTGTTCCGAGTATTAAGCATTATGGTTCTATGGTAGATCTTC 1197
Query 1239 TTAGTAGAGCTGGAAATTTAGAAGATGCATATGAATTCATTGATAAGCTCCCAATTAGCC 1298
|| ||||||||||||||||||||||||| ||||||||||||||||||||||| || || |
Sbjct 1198 TTGGTAGAGCTGGAAATTTAGAAGATGCTTATGAATTCATTGATAAGCTCCCGATAAGTC 1257
Query 1299 CAACACCAATGCTATGGAGGATTCTTTTAGCTGCTTGTAGCAGCCATAACAATTTGGACC 1358
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1258 CAACACCGATGTTATGGAGGATTCTTTTAGCTGCTTGTAGCAGCCATAACAATTTGGAGC 1317
Query 1359 TAGCTGAAAAGGTTAGCGAGAGGATCTTTGAGCTAGATGATTCACACGGTGGCGATTACG 1418
||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 1318 TAGCTGAAAAGGTTAGCGAAAGGATCTTAGAGCTAGATGATTCGCACGGTGGCGATTACG 1377
Query 1419 TGATTTTATCAAACCTATACGCGAGAAACAAGAAATGGGAATATGTAGATTCTTTAAGAA 1478
|||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1378 TGATCTTATCAAATCTATACGCGAGAAACAAGAAATGGGAAGCTGTAGATTCTTTAAGAA 1437
Query 1479 AGGTGATGAAAGATCGAAAGGCGGTTAAAGTTCCCGGTTGCAGCTCGATTGAGGTAAACA 1538
|||||||||| ||||||||||||||||||||||| || || |||||||||||||| ||||
Sbjct 1438 AGGTGATGAAGGATCGAAAGGCGGTTAAAGTTCCAGGGTGTAGCTCGATTGAGGTGAACA 1497
Query 1539 ATGTGGTTCATGAGTTTTTCTCAGGGGATGGTGTGAAGTCTGCAACCACAAAGCTTCACA 1598
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ATGTTGTTCATGAGTTTTTCTCAGGGGATGGTGTGAAGTCTGCAACCACAAAGCTTCACA 1557
Query 1599 GAGCATTAGATGAAATGGTGAAAGAGCTAAAGCTTTCAGGTTATGTTCCTGATACATCAA 1658
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1558 GAGCATTAGATGAAATGGTGAAAGAGCTAAAGCTTGCAGGCTATGTTCCTGATACATCAA 1617
Query 1659 TGGTAGTTCACGCCAATATGAATGACCAAGAGAAGGAAATTACGCTTAGGTATCACAGCG 1718
|||| |||||||| |||||| |||| |||||||||| ||||||||||||||||||||||
Sbjct 1618 TGGTGGTTCACGCTGATATGAGTGACAAAGAGAAGGAGATTACGCTTAGGTATCACAGCG 1677
Query 1719 AAAAGCTTGCGATAACGTTTGGATTATTGAATACTCCTCCGGGAACAACGATTCGGGTTG 1778
| |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1678 AGAAGCTTGCGATAGCATTTGGGTTATTGAATACTCCTCCGGGAACAACGATTCGGGTTG 1737
Query 1779 TGAAGAATCTTAGGGTGTGTAGAGATTGTCACAATGCAGCAAAGTTGATATCTCTTATAT 1838
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||
Sbjct 1738 TGAAGAATCTTAGGGTGTGTAGAGATTGCCACAATGCAGCTAAGTTGATCTCTCTAATAT 1797
Query 1839 TTGGTAGGAAAGTTGTTCTTAGAGATGTTCAAAGGTTTCATCATTTTGAAGATGGAAAAT 1898
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1798 TTGGTAGGAAAGTTGTTCTCAGAGATGTTCAAAGGTTTCATCATTTTGAAGATGGTAAAT 1857
Query 1899 GTTCTTGTGGGGATTTTTGGTGACGTCATCTCCAGACCAACAACATAATTTTCCGTAGCT 1958
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1858 GTTCTTGTAGGGATTTTTGGTGACGTCA-CTCCAGACCAACAACATAATTTTCCGTAGCT 1916
Query 1959 AAAAAT 1964
||||||
Sbjct 1917 AAAAAT 1922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76218580245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5