BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G02990.1

Length=1045
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg346793 jgi|Araly1|346793|fgenesh1_pg.C_scaffold_5000185          1107    0.0  


> Ahg346793 jgi|Araly1|346793|fgenesh1_pg.C_scaffold_5000185
Length=693

 Score = 1107 bits (599),  Expect = 0.0
 Identities = 661/692 (96%), Gaps = 0/692 (0%)
 Strand=Plus/Plus

Query  209  ATGAAGATTCTTCTAGCATCATTGTGTTTGATCAGtcttctcgtaatcttgccttctgtc  268
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAGATTCTTCTAGCATCATTGTGTGTGATCAGTCTTCTCGTAATCTTGCCTTCTGTC  60

Query  269  ttctctgcttcttcttcctctgaagattttgatttcttctacttcGTCCAACAATGGCCA  328
            ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  61   TTCTCTGCTTCTTCTTCCTCTGAAGATTTCGATTTCTTCTACTTTGTCCAACAATGGCCA  120

Query  329  GGATCATACTGTGACACACAGAAGAAGTGTTGTTATCCAAATTCAGGCAAACCAGCTGCT  388
            |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct  121  GGATCATACTGTGACACACAGAAGAAGTGTTGTTATCCAACTACAGGCAAACCAGCTGCT  180

Query  389  GATTTTGGCATTCATGGTCTTTGGCCTAACTACAAAGATGGAACTTATCCATCTAACTGT  448
            |||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct  181  GATTTTGGAATTCATGGTCTCTGGCCTAATTACAAAGATGGCACTTATCCATCTAACTGT  240

Query  449  GATGCCTCTAAACCATTCGATAGCTCAACGATATCAGATCTTCTCACTTCAATGAAGAAG  508
            || |   |||||||||||||||  |||||||||||||||||| |||||||||||||||||
Sbjct  241  GACGAGACTAAACCATTCGATAAATCAACGATATCAGATCTTATCACTTCAATGAAGAAG  300

Query  509  AGCTGGCCAACACTGGCTTGCCCAAGCGGTTCAGGTGAAGCGTTTTGGGAGCACGAATGG  568
            ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct  301  AGCTGGCCAACACTGGCTTGCCCGAGCGGTTCAGGTGAAGCGTTTTGGGAACATGAATGG  360

Query  569  GAGAAGCATGGTACTTGCTCTGAATCGGTTATCGATCAACATGAATATTTCCAAACCGCT  628
            |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct  361  GAGAAGCATGGTACTTGCTCCGAATCGGTTATTGATCAACATGAGTATTTCCAAACCGCT  420

Query  629  CTTAACCTTAAACAGAAAACCAATCTCCTTGGAGCTCTAACCAAAGCCGGGATTAATCCG  688
            |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct  421  CTTAACCTTAAACAGAAAACCAATCTCCTTGGAGCTTTAACCAGAGCCGGGATTAATCCG  480

Query  689  GATGGAAAATCTTACTCTTTGGAGAGCATAAGAGATTCGATAAAAGAGTCAATTGGTTTC  748
            ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  481  GATGGAAAATCATATTCTTTGGAGAGTATAAGAGATTCGATAAAAGAGTCAATTGGTTTC  540

Query  749  ACTCCTTGGGTTGAGTGTAACAGAGATGGTTCTGGTAATAGCCAATTGTACCAAGTCTAT  808
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  541  ACTCCTTGGGTTGAGTGTAACAGAGATGGTTCTGGTAATAGCCAATTGTATCAAGTCTAT  600

Query  809  CTTTGTGTTGACCGGTCTGGTTCCGGTTTAATCGAATGTCCGGTTTTCCCACATGGGAAA  868
            |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  601  CTTTGTGTTGACCGGTCTGGTTCCGGTTTAATTGAATGTCCGGTTTTCCCTCATGGGAAA  660

Query  869  TGTGGAGCTGAGATCGAATTCCCTTCTTTTTA  900
            |||||||| |||||||||||||||||||||||
Sbjct  661  TGTGGAGCCGAGATCGAATTCCCTTCTTTTTA  692



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38885375340


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5