BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G03000.1

Length=1608
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936073 jgi|Araly1|936073|scaffold_500264.1                        228    1e-58


> Ahg936073 jgi|Araly1|936073|scaffold_500264.1
Length=494

 Score =  228 bits (123),  Expect = 1e-58
 Identities = 143/153 (93%), Gaps = 0/153 (0%)
 Strand=Plus/Plus

Query  1417  GTAGCGATGGTGGAGAAAGGAGAGTGTGTGATATGTTTCGAGGAATGGAGCAAAAGTGAT  1476
             |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct  249   GTAGTGATGGTGGAGAAAGGAGAGTGTGTGATATGTTTGGAGGAATGGAGCAAAGGTGAT  308

Query  1477  ATGGAAACAGAGCTGCCATGTAAACACAAGTATCACTTGGAGTGTGTGGAGAAGTGGTTG  1536
             ||||| || |||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  309   ATGGAGACGGAGCTGCCATGTAAACACAAGTATCACTTGAAGTGTGTGAAGAAGTGGTTG  368

Query  1537  AAGATTCACACCTCGTGTCCTCAATGTAGATAC  1569
              |||||||| || ||||||||||||||||||||
Sbjct  369   GAGATTCACTCCACGTGTCCTCAATGTAGATAC  401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 60258767590


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5