BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G03020.1 Length=1117 Score E Sequences producing significant alignments: (Bits) Value Ahg946595 jgi|Araly1|946595|scaffold_702824.1 527 7e-149 > Ahg946595 jgi|Araly1|946595|scaffold_702824.1 Length=649 Score = 527 bits (285), Expect = 7e-149 Identities = 334/358 (93%), Gaps = 2/358 (1%) Strand=Plus/Plus Query 485 GATCTCCGTGGCACCGATCCAAATGACCCGGCGTTAACCGGTCCGGTATTGCAGCCACAT 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 276 GATCTCCGTGGCACCGATCCAAATGACCCGGCGTTAACCGGTCCGGTATTGCAGCCACAT 335 Query 545 CCACTTGCGTTCCCAC-AACCGACTATGGCCTATGAGTCGAAGCAGCTCCCAAACGGCAA 603 ||| | |||||||||| ||| ||||||||| ||||||||||||||||||||| ||||||| Sbjct 336 CCAATGGCGTTCCCACTAAC-GACTATGGCTTATGAGTCGAAGCAGCTCCCAGACGGCAA 394 Query 604 ACTATTCGTGCGTGCAGACATGCCGGGTGTTCCCAAAGAAAACTTCACTGTCTCTGTCAC 663 ||||| |||||||| |||||||||||||||||||| || |||||||||||||||||||| Sbjct 395 ACTATACGTGCGTGTAGACATGCCGGGTGTTCCCAGTGACAACTTCACTGTCTCTGTCAC 454 Query 664 GAATGGGCGAGTCAAGGTGACTGGTCAAGCTCCTGCGGTTAGCCATGATTCAAGTGGCCG 723 |||||||||||| |||||||||||| |||||||||| ||| |||| | ||||||||||| Sbjct 455 GAATGGGCGAGTGAAGGTGACTGGTGAAGCTCCTGCCGTTGGCCACCACTCAAGTGGCCG 514 Query 724 TTTCTACTCTGGTGACGTCGCTATGCTCTCCACTCCTGTTGACATTCCCAGCCGTCGGAT 783 |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 515 TTTCTACTCTGGTGACGTTGCTATGCTCTCCACTCCTGTTGACATTCCCAGCCATCGGAT 574 Query 784 CAAGACCATCGCCAAGAACGGTGTCATTCGTCTCCTTATCCCTCCATTTTGATGATGA 841 | |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| Sbjct 575 CGAGACCATCGCCAAGAACGGTGTGATTGGTCTCCTTATCCCTCCATTTTGCTGATGA 632 Score = 237 bits (128), Expect = 1e-61 Identities = 169/189 (89%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 49 CTTGTACCTTT-GTTGAATCATGGCAATGGCCGTTCCTGTTAGTGCTCGTCCTCAGTCTC 107 |||| | |||| |||||||||||||||||||||||||| ||||| ||| |||||| |||| Sbjct 1 CTTGAATCTTTGGTTGAATCATGGCAATGGCCGTTCCTCTTAGTACTCCTCCTCAATCTC 60 Query 108 CCGAAGGTTTTTACGCAATCAACAACCAGTTTCAGACGAATGGGCCAAAAGGGTTCTCTG 167 ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| Sbjct 61 CCGAAGGTTTTTACGCAATCAACAACCAGTTTCTGACGTCTGGGCCAAAAGGGTTCACTG 120 Query 168 AGATCAAGATTCTAGCGAACGAAGACATGTTCTTGAGGATGGATTTGCCTGGAGTTCCTG 227 || ||||||| || | || |||||||||||| |||| |||||||||||||||||||||| Sbjct 121 AGTTCAAGATGCTGGTAAATGAAGACATGTTCGTGAGAATGGATTTGCCTGGAGTTCCTG 180 Query 228 ATGAAGGCG 236 | ||||||| Sbjct 181 AAGAAGGCG 189 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41630225364 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5