BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03020.1
Length=1117
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946595 jgi|Araly1|946595|scaffold_702824.1 527 7e-149
> Ahg946595 jgi|Araly1|946595|scaffold_702824.1
Length=649
Score = 527 bits (285), Expect = 7e-149
Identities = 334/358 (93%), Gaps = 2/358 (1%)
Strand=Plus/Plus
Query 485 GATCTCCGTGGCACCGATCCAAATGACCCGGCGTTAACCGGTCCGGTATTGCAGCCACAT 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GATCTCCGTGGCACCGATCCAAATGACCCGGCGTTAACCGGTCCGGTATTGCAGCCACAT 335
Query 545 CCACTTGCGTTCCCAC-AACCGACTATGGCCTATGAGTCGAAGCAGCTCCCAAACGGCAA 603
||| | |||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct 336 CCAATGGCGTTCCCACTAAC-GACTATGGCTTATGAGTCGAAGCAGCTCCCAGACGGCAA 394
Query 604 ACTATTCGTGCGTGCAGACATGCCGGGTGTTCCCAAAGAAAACTTCACTGTCTCTGTCAC 663
||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 395 ACTATACGTGCGTGTAGACATGCCGGGTGTTCCCAGTGACAACTTCACTGTCTCTGTCAC 454
Query 664 GAATGGGCGAGTCAAGGTGACTGGTCAAGCTCCTGCGGTTAGCCATGATTCAAGTGGCCG 723
|||||||||||| |||||||||||| |||||||||| ||| |||| | |||||||||||
Sbjct 455 GAATGGGCGAGTGAAGGTGACTGGTGAAGCTCCTGCCGTTGGCCACCACTCAAGTGGCCG 514
Query 724 TTTCTACTCTGGTGACGTCGCTATGCTCTCCACTCCTGTTGACATTCCCAGCCGTCGGAT 783
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 515 TTTCTACTCTGGTGACGTTGCTATGCTCTCCACTCCTGTTGACATTCCCAGCCATCGGAT 574
Query 784 CAAGACCATCGCCAAGAACGGTGTCATTCGTCTCCTTATCCCTCCATTTTGATGATGA 841
| |||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 575 CGAGACCATCGCCAAGAACGGTGTGATTGGTCTCCTTATCCCTCCATTTTGCTGATGA 632
Score = 237 bits (128), Expect = 1e-61
Identities = 169/189 (89%), Gaps = 1/189 (1%)
Strand=Plus/Plus
Query 49 CTTGTACCTTT-GTTGAATCATGGCAATGGCCGTTCCTGTTAGTGCTCGTCCTCAGTCTC 107
|||| | |||| |||||||||||||||||||||||||| ||||| ||| |||||| ||||
Sbjct 1 CTTGAATCTTTGGTTGAATCATGGCAATGGCCGTTCCTCTTAGTACTCCTCCTCAATCTC 60
Query 108 CCGAAGGTTTTTACGCAATCAACAACCAGTTTCAGACGAATGGGCCAAAAGGGTTCTCTG 167
||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||
Sbjct 61 CCGAAGGTTTTTACGCAATCAACAACCAGTTTCTGACGTCTGGGCCAAAAGGGTTCACTG 120
Query 168 AGATCAAGATTCTAGCGAACGAAGACATGTTCTTGAGGATGGATTTGCCTGGAGTTCCTG 227
|| ||||||| || | || |||||||||||| |||| ||||||||||||||||||||||
Sbjct 121 AGTTCAAGATGCTGGTAAATGAAGACATGTTCGTGAGAATGGATTTGCCTGGAGTTCCTG 180
Query 228 ATGAAGGCG 236
| |||||||
Sbjct 181 AAGAAGGCG 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41630225364
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5