BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03050.1
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484214 jgi|Araly1|484214|fgenesh2_kg.5__206__AT2G03050.1 1426 0.0
> Ahg484214 jgi|Araly1|484214|fgenesh2_kg.5__206__AT2G03050.1
Length=1051
Score = 1426 bits (772), Expect = 0.0
Identities = 856/895 (96%), Gaps = 12/895 (1%)
Strand=Plus/Plus
Query 1 GATGATAGCAAGGTGTTCTCTTTTTCCGCCGCCGTGTTTCTCCGCCGTGAGGA-TTAGAT 59
|||||| |||||||| |||||||||||||||||||||||||||||||| | || ||||||
Sbjct 3 GATGATTGCAAGGTGCTCTCTTTTTCCGCCGCCGTGTTTCTCCGCCGTCA-GAGTTAGAT 61
Query 60 GTTTCGCCGGAGAAACTTCAGATACTGGGATTCTATTCCGGGAGAAGCTTATTTACCTTC 119
||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 62 GTTTCGCCGGAGAAACTTCAGATACTGGGATTCTATTTCGAGAGAAGCTTATTTATCTTC 121
Query 120 AAGACCTTAACGTAGATCCTCACAAAGCTCTCCGAGTAAACCCATCTCTCCGTTCTGCTC 179
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 122 AAGACCTTAACGTTGATCCTCACAAAGCTCTCCGAGTAAACCCATCTCTCCGTTCAGCTC 181
Query 180 CAATCTCCTCCGTCGTCTCCGTCGAGACTCTACTCTCTTCCACCGGACTCTCAAGACCCG 239
||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct 182 CAATCTCCTCCGTTGTCTCCGTCGAGAGTCTTCTCTCTTCCACCGGACTCTCAAGACCTG 241
Query 240 CCGTTGGTCGTATCCTCGACATGTTTCCAGATTTGTTAACTTCTGATCCTGAATCTGAAA 299
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CCGTTGGTCGTATCCTCGATATGTTTCCAGATTTGTTAACTTCTGATCCTGAATCTGAAA 301
Query 300 TCTTACCAGTTCTTCGCTTCTTATCCAATGAGATTTCAATTTCAGAGCAAGACATACCTA 359
|||||||||||||||||||||||||| ||||||||||||||||||||||||| || || |
Sbjct 302 TCTTACCAGTTCTTCGCTTCTTATCCGATGAGATTTCAATTTCAGAGCAAGATATTCCCA 361
Query 360 AATCGATCTCTCGTTGTCCTCGATTGCTAATTTCATCTGTAGATTATCAGCTTCGTCCTG 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 AATCGATCTCTCGCTGTCCTCGATTGCTAATTTCATCTGTAGATTATCAGCTTCGTCCTG 421
Query 420 CATTAACGTTCCTCAAAACCCTAGGATTCGTGGGTCGCGACACGATTACGTCACGGAACA 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CATTAACGTTTCTCAAAACCCTAGGATTCGTGGGTCGCGACACGATTACGTCACGGAACA 481
Query 480 CGGTGT-TGCTTGTATCGAATGTGGAACGAACCCTAATCCCCAAAATTGAGTATCTTGAA 538
|||| | |||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 482 CGGT-TCTGCTTGTATCGAATGTGGAAAGAACCCTAATCCCCAAAATTGAGTACCTTGAA 540
Query 539 GAAGGGTTAGGGTTTACA-AGAGAAGAAGTAGCGAAGATGGTTGTGAGATCTCCGGCGTT 597
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAGGGTTAGGGTTTA-ATAGAGAAGAAGTAGCGAAGATGGTTGTGAGATCTCCGGCGTT 599
Query 598 GTTGACTTATAGTGTTGATAACAATTTAGTTCCTAAAGTTGAGTTTTTTATTGAGGAGAT 657
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 GTTGACTTATAGTGTGGATAACAATTTAGTTCCTAAAGTTGAGTTTTTTATGGAGGAGAT 659
Query 658 GCGTGGAGATGTTAAGGAGCTGAAACGTTTCCCTCAGTATTTTTCGTTTAGCTTGGAGAG 717
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCGTGGTGATGTTAAGGAGCTGAAACGTTTCCCTCAGTATTTTTCGTTTAGCTTGGAGAG 719
Query 718 GAAGATAAAGCCAAGGCATAGATTGCTTAAGGAACATGGGATTTTGATGCCTTTGTCTGA 777
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 GAAGATAAAGCCAAGGCATAGATTGCTTAAGGAACATGGGATTTTGATGCCGTTGTCTGA 779
Query 778 GATGTTGAAGGTTAGTGATGGTCAGTTTAACCATTGGCTTTTAGAACTTCGTCTTAGGTC 837
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 GATGTTGAAGGTTAGTGATGGTCAGTTTAACAATTGGCTTTTAGAACTTCGTCTTAGGTC 839
Query 838 TGCTGAAAGAAGATGATGATAAACAACAACG-T-T---CTTTTT-GATGTTCTTT 886
||||||||||||||||||||||||||||||| | | |||||| ||||||||||
Sbjct 840 TGCTGAAAGAAGATGATGATAAACAACAACGATGTAAGCTTTTTTGATGTTCTTT 894
Score = 191 bits (103), Expect = 1e-47
Identities = 141/157 (90%), Gaps = 11/157 (7%)
Strand=Plus/Plus
Query 1005 TGAAAGAAGATGATGATCAACAACAACAATGTAAGC-TTTTTGATGTTCTTTGTTC-TTG 1062
||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| ||
Sbjct 843 TGAAAGAAGATGATGATAAACAACAACGATGTAAGCTTTTTTGATGTTCTTTGTTCTTTT 902
Query 1063 GTACTTGAGATTTGAGAGATGAAAATTGCAGAAGTTTTGTACTTTGGGACATGCTAAGAC 1122
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 903 TTACTTGAGATTTGAGAGATGAAAATTGCAAAAGTTTTGTACTTTGGGACATGCTAAGAC 962
Query 1123 ACTTTCATATGAGCTTGTATATAGTTTTTTGTTTCAA 1159
| | ||||||||||||||||||| |||||||
Sbjct 963 A-T-------GAGCTTGTATATAGTTTTT-GTTTCAA 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46967433744
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5