BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03060.2
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896262 jgi|Araly1|896262|Al_scaffold_0005_228 1770 0.0
> Ahg896262 jgi|Araly1|896262|Al_scaffold_0005_228
Length=1131
Score = 1770 bits (958), Expect = 0.0
Identities = 1078/1132 (95%), Gaps = 23/1132 (2%)
Strand=Plus/Plus
Query 177 ATGGGAAGGGTAAAATTGAAGATAAAGAAGTTAGAGAACACAAATGGACGCCAATCTACA 236
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGGAAGGGTAAAATTGAAGATAAAGAAGTTAGAGAACACAACTGGACGCCAATCTACA 60
Query 237 TTTGCTAAAAGGAAAAATGGGATCTTGAAAAAGGCTAATGAGCTATCTATTCTTTGTGAC 296
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TTTGCTAAAAGGAAAAATGGGATCTTGAAAAAGGCTAATGAGCTATCAATTCTTTGTGAC 120
Query 297 ATTGATATTGTTCTTCTTATGTTCTCTCCTACTGGCAAGGCTGCAATATGTTGCGGTACA 356
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTGATATTGTTCTTCTTATGTTTTCTCCTACTGGCAAGGCTGCAATATGTTGCGGTACA 180
Query 357 CGAAGTAGCATGGAAGAGGTGATTGCTAAGTTTTCTCAAGTAACACCGCAGGAAAGAACG 416
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 CGAAGTAGCATGGAAGAGGTGATTGCTAAGTTTTCTCAAGTATCACCGCAGGAAAGAACG 240
Query 417 AAAAGGAAGTTCGAGAGTCTTGAAAACTTGAAGAAAACTTTCCAAAAGTTGGATCACGAT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAAGGAAGTTCGAGAGTCTTGAAAACTTGAAGAAAACTTTCCAAAAGTTGGATCACGAT 300
Query 477 GTAAATATACGCGAATTTATAGCCTCAAGTAATTCAACAGTAGAGGACTTGAGTACTCAA 536
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 301 GTAAATATACGCGAATTTATAGCCTCAAGTAATTCAACAATAGAGGACTTGAGTAATCAA 360
Query 537 GCAAGGATTCTGCAGGCTCGGATTTCTGAGATACATGGAAGATTAAGTTATTGGACGGAA 596
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCAAGGATTCTGCAAGCTCGGATTTCTGAGATACATGGAAGATTAAGTTATTGGACGGAA 420
Query 597 CCAGATAAGATTAACAATGTTGAACACTTGGGACAGCTCGAAATTTCGATTAGGCAATCC 656
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCCGATAAGATTAACAACGTTGAACACTTGGGACAGCTCGAAATTTCGATTAGGCAATCC 480
Query 657 CTTGATCAATTGCGTGCACACAAGGAACATTTTGGGCAGCAGCAACAGGCAATGCAAATA 716
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 481 CTTGACCAATTGCGTGCACATAAGGAACATTTTGGGCAGCAGCAACACGCAATGCAAATA 540
Query 717 GAAAACGCAAACTTTGTTAAGGATTGGTCAACATGCTCGATGCAAGATGGGATTCAGATT 776
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAAACGCAAACTTTGTTAAAGATTGGTCAACATGCTCGATGCAAGATGGGATTCAGATT 600
Query 777 CCTTTAGAACAACAGCTTCAATCTATGTCATGGATTCTTAATAGCAACACCACCAACATT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCTTTAGAACAACAGCTTCAATCTATGTCATGGATTCTTAATAGCAACACCACCAACATT 660
Query 837 GTCACCGAGGAACACAATTCAATCCCGCAGAGGGAAGTCGAGTGCTCAGCGAGTTCTTCA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTCACCGAGGAACACAATTCAATCCCGCAGAGGGAAGTCGAGTGCTCAGCGAGTTCTTCA 720
Query 897 TTCGGGAGCTATCCAGGCTACTTTGGAACAGGGAAATCTCCTGAAATGACAATTCCGGGT 956
|| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 721 TTTGGGAGCTATCCAGGCTACTTTGGAACAGGGAAATCTCCTGAAATTACAATTTCGGGT 780
Query 957 CAAGAAACAAGCTTTCTTGATGAACTAAACACCGGACAGCTGAAACAGGACACAAGCTCG 1016
|||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 781 CAAGAAACAAGCTTTCTTGATGAACTAAACACCGGACAGCTGAAACCGCAAACAAGCTCG 840
Query 1017 CAGCAGCAGTTCACTAATAATAATAATATCACAGCATACAATCCCAATCTTCACAATGAT 1076
||||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||
Sbjct 841 CAGCAGCAGTTCACTAATAATAATA-T--CACAGCATACAATCCCAATCTGCAGAATGAT 897
Query 1077 ATGAATCATCACCAAACGTTGCCTCCTCCTCCTCTTCCTCTTACTCTTCCGCATGCTCAG 1136
||||||||||||||||||||||||||||| | | || | ||| | | | ||
Sbjct 898 CTGAATCATCACCAAACGTTGCCTCCTCCTA-T-T-CCGC---CTC--C----T-C--AG 942
Query 1137 GTGTATATTCCAATGAATCAGAGAGAGTATCATATGAATGGATTCTTTGAAGCACCACCA 1196
||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct 943 GTGTATATTCCAATGGCTCAGAGAGAGTACCATATGAATGGATTCTTTGAAGGACCACCA 1002
Query 1197 CCTG-ATTCTTCTGCTTACAACGACAACACCAACCAAACCAGGTTTGGT--T-CTAGCAG 1252
|||| | | ||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 1003 CCTGGACT-TTCTGCTTACAACAACAACACCAACCAAACCAGGTTTGGTGGTTCTAGCAG 1061
Query 1253 CAGCTCCTTGCCTTGCTCAATCTCAATGTTCGACGAATACTTGTTTTCCCAG 1304
|| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CAACTCCTTGCCTTGCTCAATCTCAATGTTCGACGAATACTTGTTTTCCCAG 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5