BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03090.1
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936082 jgi|Araly1|936082|scaffold_500273.1 1234 0.0
Ahg472728 jgi|Araly1|472728|fgenesh2_kg.1__2682__AT1G26770.2 420 2e-116
Ahg476086 jgi|Araly1|476086|fgenesh2_kg.2__1216__AT1G69530.4 370 2e-101
Ahg934422 jgi|Araly1|934422|scaffold_402410.1 167 2e-40
Ahg482761 jgi|Araly1|482761|fgenesh2_kg.4__1821__AT2G37640.1 167 2e-40
> Ahg936082 jgi|Araly1|936082|scaffold_500273.1
Length=803
Score = 1234 bits (668), Expect = 0.0
Identities = 760/805 (94%), Gaps = 4/805 (0%)
Strand=Plus/Plus
Query 69 CTCTGCACTTTCTCAAAGAGAATGTTCATGGGTAAGATGGGTCTTTTGGGAATTGCTCTG 128
||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||
Sbjct 1 CTCTGCACTTTCTCAAACAGAATGTTCATGGGAAAGATGAGTCTTTTGGGATTTGCTCTG 60
Query 129 TTTTGTTTTGCTGCAATGGTGTGCTCTGTTCATGGC-TATGACGCTGGATGGGTCAATGC 187
| | ||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 61 GTGGGATTTGCTGCAATGGTGTGCTCTGTTCAT-GCTTATGACGCTGGATGGGTCAATGC 119
Query 188 TCATGCTACCTTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGTGGAGCTTGTGGCTA 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCATGCTACCTTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGTGGAGCTTGTGGCTA 179
Query 248 CGGGAACCTCTACAGTCAAGGTTACGGGACCAACACGGCGGCGTTGAGCACTGCTCTGTT 307
||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 180 TGGGAATCTCTATAGTCAAGGGTACGGTACCAACACGGCGGCGTTGAGCACTGCTCTGTT 239
Query 308 CAACAACGGTCTTAGCTGCGGGGCTTGTTTTGAGATCAAGTGTCAGAGCGACGGCGCGTG 367
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 240 CAACAACGGTCTTAGCTGCGGCGCGTGTTTCGAGATCAAGTGTCAGAGCGACGGCGCGTG 299
Query 368 GTGTTTACCTGGTGCTATCATTGTCACAGCCACCAATTTCTGTCCTCCTAACAACGCTCT 427
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTGTTTACCTGGTGCTATCATAGTCACAGCCACCAATTTCTGTCCTCCTAACAACGCTCT 359
Query 428 TCCCAATAACGCTGGTGGTTGGTGTAACCCTCCGCTTCATCATTTCGATCTCTCTCAGCC 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCCCAATAACGCTGGTGGTTGGTGTAACCCTCCGCTTCATCATTTCGATCTCTCTCAGCC 419
Query 488 TGTTTTTC-AACGCATTGCTCAGTACAAAGCTGGTGTTGTCCCTGTTTCCTACAGAAGGG 546
| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 -GATTTTCCAACGCATTGCTCAGTACAAAGCTGGTGTTGTCCCTGTTTCTTACAGAAGGG 478
Query 547 TTCCGTGTATGAGAAGAGGAGGTATAAGATTCACAATCAACGGTCACTCTTACTTCAACC 606
||||||| |||||||| ||||| ||||| ||||||||||| || ||||||||||||||||
Sbjct 479 TTCCGTGCATGAGAAGGGGAGGCATAAGGTTCACAATCAATGGCCACTCTTACTTCAACC 538
Query 607 TTGTCTTGGTGACCAATGTTGGTGGTGCTGGAGATGTTCATTCGGTTGCGGTTAAAGGTT 666
| || ||||||||||||||||||||||| ||||||||||| || || |||||||||||||
Sbjct 539 TGGTTTTGGTGACCAATGTTGGTGGTGCCGGAGATGTTCACTCTGTAGCGGTTAAAGGTT 598
Query 667 CTAGAACAAGGTGGCAACAAATGTCAAGAAACTGGGGACAGAACTGGCAAAGCAACAATC 726
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 599 CAAGAACAAGGTGGCAACAAATGTCAAGAAACTGGGGTCAAAACTGGCAAAGCAACAATC 658
Query 727 TCTTAAACGGTCAAGCATTGTCATTTAAGGTGACTGCTAGTGATGGTCGTACCGTCGTCT 786
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 659 TTTTAAACGGTCAAGCATTGTCCTTTAAGGTTACTGCTAGTGATGGTCGTACCGTCGTCT 718
Query 787 CTAACAACATTGCTCCAGCTAGTTGGTCCTTTGGACAAACCTTCACCGGCCGTCAATTCC 846
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 719 CTAACAACATTGCTCCGGCTAGTTGGTCTTTTGGACAAACCTTCACCGGCCGTCAATTCC 778
Query 847 GTTAAAATTGAGTCAAGTTCGGTTT 871
||| |||||| ||||||||||||||
Sbjct 779 GTTGAAATTGTGTCAAGTTCGGTTT 803
> Ahg472728 jgi|Araly1|472728|fgenesh2_kg.1__2682__AT1G26770.2
Length=805
Score = 420 bits (227), Expect = 2e-116
Identities = 475/593 (80%), Gaps = 24/593 (4%)
Strand=Plus/Plus
Query 177 TGGGTCAATGCTCATGCTACCTTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGTGGA 236
||| |||| ||||| || || ||||| |||||| | |||||||| || |||||||||||
Sbjct 135 TGGATCAACGCTCACGCCACTTTCTACGGTGGAGGCGATGCTTCCGGCACAATGGGTGGT 194
Query 237 GCTTGTGGCTACGGGAACCTCTACAGTCAAGGTTACGGGACCAA-CACGGCGGCGTTGAG 295
|||||||| || || || || || || ||||| ||||||| ||| ||||||||| |||||
Sbjct 195 GCTTGTGGATATGGTAATCTATATAGCCAAGGCTACGGGA-CAAGCACGGCGGCTTTGAG 253
Query 296 CACTGCTCTGTTCAACAACGGTCTTAGCTGCGGGGCTTGTTTTGAGATCAAG-TGTCAGA 354
||| ||| ||||||||||||| ||||| || || |||| |||||||| ||| ||| | |
Sbjct 254 CACGGCTTTGTTCAACAACGGACTTAGTTGTGGTTCTTGCTTTGAGAT-AAGATGTGAAA 312
Query 355 GCGACGGCGCGTGGTGTTTACCTGG-TGCTATCATTGTCACAGCCACCAATTTCTGTCCT 413
||| || |||||||||||||| | | ||| |||| || || || || ||||| ||
Sbjct 313 ACGATGGTAAATGGTGTTTACCTGGCT-CAATCGTTGTAACCGCTACAAACTTCTGCCCG 371
Query 414 CCTAACAACGCTCTT-CCCAATAACGCTGGTGGTTGGTGTAACCCTCCGCTTCATCA-TT 471
|| || ||||| || | || || ||||||||||||||| ||||| ||| | || ||
Sbjct 372 CCAAATAACGC-GTTAGCGAACAATAATGGTGGTTGGTGTAATCCTCCTCTTGAACACTT 430
Query 472 TCGATCTCT-CTCAGCCTGTTTTTCAACGCATTGCTCAGTACAAAGCTGGTGTTGTCCCT 530
| || || | ||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 431 T-GACCT-TGCTCAGCCTGTTTTTCAACGCATTGCTCAGTACAGAGCTGGAATCGTCCCT 488
Query 531 GTTTCCTACAGAAGGGTTCCGTGTATGAGAAGAGGAGGTATAAGATTCACAATCAACGGT 590
||||||||||| || |||| || | |||||||||||| ||||||||||| || |||||
Sbjct 489 GTTTCCTACAGGAGTTTTCCCTGCAGGAGAAGAGGAGGAATAAGATTCACGATAAACGGC 548
Query 591 CACTCTTACTTCAACCTTGT-CTTGGTGACCAATGTTGGTGGTGCTGGAGATGTTCATTC 649
||||| |||||||||||||| || | | || || || |||||||| ||||||||||| ||
Sbjct 549 CACTCATACTTCAACCTTGTGCT-GATCACAAACGTCGGTGGTGCCGGAGATGTTCACTC 607
Query 650 GGTTGCGGTTAAAGGTTCTAGAACAAGGT-GGCAA-CAAATGTCAAGAAACTGGGGACAG 707
|| ||| | || ||||| |||||| ||| ||||| | | ||||||| |||||||||||
Sbjct 608 GGCGGCGATCAAGGGTTCAAGAACA-GGTTGGCAAGCTA-TGTCAAGGAACTGGGGACAA 665
Query 708 AACTGGCAAAGCAACAATCT--CTTAAACGGTCAAGCA-TTGTCATTTAAGGT 757
|| |||||||||||| ||| | | |||||||||||| || || ||||||||
Sbjct 666 AATTGGCAAAGCAAC--TCTTACCTCAACGGTCAAGCACTT-TCCTTTAAGGT 715
> Ahg476086 jgi|Araly1|476086|fgenesh2_kg.2__1216__AT1G69530.4
Length=1313
Score = 370 bits (200), Expect = 2e-101
Identities = 524/677 (77%), Gaps = 36/677 (5%)
Strand=Plus/Plus
Query 177 TGGGTCAATGCTCATGCTACCTTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGTGGA 236
|||||||| || || || || ||||| ||||| |||||||||| || |||||||| ||
Sbjct 273 TGGGTCAACGCACACGCCACATTCTACGGTGGTGGTGATGCTTCCGGCACAATGGGAGGT 332
Query 237 GCTTGTGGCTACGGGAACCTCTACAGTCAAGGTTACGGGACCAACACGGCGGCGTTGAGC 296
|||||||| ||||| ||||| || || ||||| || || |||||||| || ||| | |||
Sbjct 333 GCTTGTGGTTACGGAAACCTATATAGCCAAGGCTATGGAACCAACACCGCAGCGCTAAGC 392
Query 297 ACTGCTCTGTTCAACAACGGTCTT-AGCTGCGGGGCTTGTTTTGAGATCAAG-TGTCAGA 354
|| ||| |||||||||||||| || || || || ||||| || ||||| ||| || || |
Sbjct 393 ACGGCTTTGTTCAACAACGGT-TTAAGTTGTGGTGCTTGCTTCGAGAT-AAGATGCCAAA 450
Query 355 GCGACGGCGCGTGGTGTTTACCTGG-TGCTATCATTGTCACAGCCACCAA-TTTCTGTCC 412
||| || |||||| | ||||| | | || | ||||||||||| || ||| || ||
Sbjct 451 ACGATGGAAAATGGTGTCTCCCTGGCT-CAATTGTCGTCACAGCCACAAACTTT-TGCCC 508
Query 413 TCCTAACAACGCTCTT-CCCAATAACGCTGGTGGTTGGTGTAACCCTCCGCTTCATCATT 471
||||||||||| || || || ||||| || ||||||||||||||||| | || ||||
Sbjct 509 GCCTAACAACGC-GTTACCGAACAACGCAGGAGGTTGGTGTAACCCTCCTCAGCAACATT 567
Query 472 TCGATCTCTCTCAGCCTGTTTTTCAACGCATTGCTCAGTACAAAGCTGGTGTTG-TCCCT 530
| |||||||||||||| || |||||||| || ||||| |||| ||| || ||| ||||
Sbjct 568 TTGATCTCTCTCAGCCCGTATTTCAACGTATCGCTCAATACAGAGCCGGCATTGTTCCC- 626
Query 531 GTTTCCTACAGAAGGGTTCCGTGTATGAGAAGAGGAGGTATAAGATTCACAATCAACGGT 590
|| | ||| |||| || || || ||||||||||||| ||||| || || || |||||
Sbjct 627 GTCGCTTACCGAAGAGTGCCATGCGTGAGAAGAGGAGGAATAAGGTTTACGATAAACGGA 686
Query 591 CACTCTTACTTCAACCTT-G-TCTTGGTGACCAATGTTGGTGGTGCTGGAGATGTTCATT 648
|||||||||||||| ||| | |||| | || || || || || || ||||||||||| |
Sbjct 687 CACTCTTACTTCAA-CTTAGTTCTT-ATTACTAACGTCGGAGGAGCCGGAGATGTTCACT 744
Query 649 CGGTTG-CGGTTAAAGGTTCTAGAACAAGG-TGGCAA-CAAATGTCAAGAAACTGGGGAC 705
| | || |||||| ||||| ||||| ||| |||||| | |||||||||||||||||||
Sbjct 745 CAG-TGATGGTTAAGGGTTCAAGAAC-AGGATGGCAAGC-TATGTCAAGAAACTGGGGAC 801
Query 706 AGAACTGGCAAAGCAACAATCT--CTTAAACGGTCAAGCAT-TGTCATTTAAGGTGACTG 762
|||||||||| || ||| ||| | ||||||| ||| | | | ||||| || || ||
Sbjct 802 AGAACTGGCAGAGTAAC--TCTTACCTAAACGGACAATC-TCTCTCATTCAAAGTCACCA 858
Query 763 CTAGTGATGGTCGTACCG-TCGTCTCTAACAACATTGCTC-CAGCTAGT-TGGTCCTTT- 818
| || |||||||| ||| | |||||||||||| | ||| | || || ||||| |||
Sbjct 859 CAAGCGATGGTCGAACCACT-GTCTCTAACAACGTGGCTAAC-GC-AGGCTGGTC-TTTC 914
Query 819 GGACAAACCTTCACCGG 835
|| || |||||||||||
Sbjct 915 GGCCAGACCTTCACCGG 931
> Ahg934422 jgi|Araly1|934422|scaffold_402410.1
Length=829
Score = 167 bits (90), Expect = 2e-40
Identities = 348/467 (75%), Gaps = 40/467 (9%)
Strand=Plus/Plus
Query 198 TTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGTGGAGCTTGTGGCTACGGGAACCTC 257
||||| ||||| ||||| || || || |||||||| || || ||||| ||||||||| |
Sbjct 147 TTCTACGGTGGTAGTGACGCCTCCGGCACAATGGGCGGCGCGTGTGGGTACGGGAACTTG 206
Query 258 TACAGTCAAGGTTACGG-GACCAACACGGCGGCGTTGAGCACTGCTCTGTTCAACAACGG 316
||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 207 TACAGCCAAGGATACGGTG-TGAACACGGCGGCGTTGAGCACTGCTCTGTTCAACAACGG 265
Query 317 TCTT-AGCTGCGGGGCTTGTTTTGAGATCAAGTGT-CAGAGCGACGGCGCG-TGGTGT-T 372
|| |||||||| |||||||||||||| |||||| | || ||| || | |||||| |
Sbjct 266 A-TTCAGCTGCGGTGCTTGTTTTGAGATTAAGTGTACTGAT-GACC-CGAGATGGTGTGT 322
Query 373 TACCTGG---T--G-CTAT-CATTGTCACAGCCACCAA-TTTCTGTCCTCCTAACAACGC 424
| || || | | |||| | |||| || || || || ||| ||||| || || |||
Sbjct 323 T-CCGGGAAATCCGTCTATTC-TTGTGACGGCGACAAACTTT-TGTCCACCGAATTTCGC 379
Query 425 TCTTCCCAATAACG-CTGGTGGTTGGTGTAACCCTCCGCTTCATCATTTCGATCTCTCTC 483
|| || | | ||| | || || |||||||| || |||| | ||||| |||||| | |
Sbjct 380 TCAGCCGAGTGACGAC-GGAGGATGGTGTAATCCGCCGCGAGAGCATTTTGATCTCGC-C 437
Query 484 A-GCCTGTTTT--TCAACGCATTGCTCAGTACAAAGCTGGTGTTGTCCCTGTTTCCTA-C 539
| |||| | || |||| | || | | |||| || || ||||||| || ||||| |
Sbjct 438 ATGCCTATGTTCCTCAA-G-ATCGGTTTGTACCGTGCCGGCATTGTCCCCGTCTCCTATC 495
Query 540 AGAAGGGTTCCGTGTATGAGAAGA--GGAGGTATAAGATTCACAATCAACGG-T-CACTC 595
| ||||| || ||| | ||||| ||||| |||||||||||| | ||||| | ||
Sbjct 496 -GCAGGGTACCTTGTC-G-GAAGATAGGAGGGATAAGATTCACAGTAAACGGATTCAGA- 551
Query 596 TTACTTCAACCTTGT-CTTGGTGACCAATGTTGGTGGTGCTGGAGAT 641
| ||||||| ||||| || ||| || || |||| || || ||||||
Sbjct 552 T-ACTTCAATCTTGTTCT-GGTAACTAACGTTGCCGGCGCCGGAGAT 596
> Ahg482761 jgi|Araly1|482761|fgenesh2_kg.4__1821__AT2G37640.1
Length=1183
Score = 167 bits (90), Expect = 2e-40
Identities = 348/467 (75%), Gaps = 40/467 (9%)
Strand=Plus/Plus
Query 198 TTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGTGGAGCTTGTGGCTACGGGAACCTC 257
||||| ||||| ||||| || || || |||||||| || || ||||| ||||||||| |
Sbjct 165 TTCTACGGTGGTAGTGACGCCTCCGGCACAATGGGCGGCGCGTGTGGGTACGGGAACTTG 224
Query 258 TACAGTCAAGGTTACGG-GACCAACACGGCGGCGTTGAGCACTGCTCTGTTCAACAACGG 316
||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 225 TACAGCCAAGGATACGGTG-TGAACACGGCGGCGTTGAGCACTGCTCTGTTCAACAACGG 283
Query 317 TCTT-AGCTGCGGGGCTTGTTTTGAGATCAAGTGT-CAGAGCGACGGCGCG-TGGTGT-T 372
|| |||||||| |||||||||||||| |||||| | || ||| || | |||||| |
Sbjct 284 A-TTCAGCTGCGGTGCTTGTTTTGAGATTAAGTGTACTGAT-GACC-CGAGATGGTGTGT 340
Query 373 TACCTGG---T--G-CTAT-CATTGTCACAGCCACCAA-TTTCTGTCCTCCTAACAACGC 424
| || || | | |||| | |||| || || || || ||| ||||| || || |||
Sbjct 341 T-CCGGGAAATCCGTCTATTC-TTGTGACGGCGACAAACTTT-TGTCCACCGAATTTCGC 397
Query 425 TCTTCCCAATAACG-CTGGTGGTTGGTGTAACCCTCCGCTTCATCATTTCGATCTCTCTC 483
|| || | | ||| | || || |||||||| || |||| | ||||| |||||| | |
Sbjct 398 TCAGCCGAGTGACGAC-GGAGGATGGTGTAATCCGCCGCGAGAGCATTTTGATCTCGC-C 455
Query 484 A-GCCTGTTTT--TCAACGCATTGCTCAGTACAAAGCTGGTGTTGTCCCTGTTTCCTA-C 539
| |||| | || |||| | || | | |||| || || ||||||| || ||||| |
Sbjct 456 ATGCCTATGTTCCTCAA-G-ATCGGTTTGTACCGTGCCGGCATTGTCCCCGTCTCCTATC 513
Query 540 AGAAGGGTTCCGTGTATGAGAAGA--GGAGGTATAAGATTCACAATCAACGG-T-CACTC 595
| ||||| || ||| | ||||| ||||| |||||||||||| | ||||| | ||
Sbjct 514 -GCAGGGTACCTTGTC-G-GAAGATAGGAGGGATAAGATTCACAGTAAACGGATTCAGA- 569
Query 596 TTACTTCAACCTTGT-CTTGGTGACCAATGTTGGTGGTGCTGGAGAT 641
| ||||||| ||||| || ||| || || |||| || || ||||||
Sbjct 570 T-ACTTCAATCTTGTTCT-GGTAACTAACGTTGCCGGCGCCGGAGAT 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50817848361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5