BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03120.1
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936093 jgi|Araly1|936093|scaffold_500284.1 2056 0.0
> Ahg936093 jgi|Araly1|936093|scaffold_500284.1
Length=1227
Score = 2056 bits (1113), Expect = 0.0
Identities = 1191/1229 (97%), Gaps = 3/1229 (0%)
Strand=Plus/Plus
Query 115 ACGAAACACAAGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG 174
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ACGAAACACAAGAAGCAATTATGAAGAATTGTGAGAGATTCGCTAATCTCGCTCTCGCAG 60
Query 175 GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTATTCTCACAG 234
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTATTCTCACAG 120
Query 235 CATGTATCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGGAGA 294
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CATGTATCACTGTTTATGTTGGTTGCTTTCGTTCCGTCAAGGATACTCCTCCAACGGAGA 180
Query 295 CGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCTATGCTTCTCTCAC 354
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGATGTCTAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCTATGCTTCTCTCAC 240
Query 355 TTTTCTTATTGTTCAAGTTTCTCTCAAAGGACTTGGTTAATGCTGTGCTAACAGCTTACT 414
||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||
Sbjct 241 TTTTCTTATTGTTCAAGTTTCTCTCGAAGGATTTGGTCAATGCTGTTCTAACAGCTTACT 300
Query 415 TCTTTGTTCTTGGGATTGTCGCTCTTTCAGCGACATTGTTACCAGCCATCAGAAGATTTT 474
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 TCTTTGTTCTTGGGATTGTCGCTCTTTCGGCGACATTGTTACCAGCCATCAGAAGATTTT 360
Query 475 TACCAAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGTCTTTGG 534
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 TGCCAAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAATCTTTGG 420
Query 535 AGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAACATTCTTCTGTGCGT 594
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 421 AGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATACCTGGAACGTTCTTCTGTGCGT 480
Query 595 GGTATGCGTGGAAAAAACATTGGCTGGCTAACAATATCCTCGGCCTTTCCTTCTGCATTC 654
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 GGTATGCGTGGAAAAAACATTGGCTGGCTAACAATATTCTCGGCCTTTCCTTCTGCATTC 540
Query 655 AGGGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTGGCAGGAC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 AGGGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTGGCTGGAC 600
Query 715 TATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAAT 774
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 TATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCTGTTATGGTTAGTGTTGCCAAAT 660
Query 775 CCTTCGATGCTCCAATTAAGCTCTTATTCCCTACGGGTGATGCTCTAAGACCCTATTCTA 834
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 661 CCTTCGATGCTCCAATAAAGCTTTTATTCCCTACGGGTGATGCTCTTAGACCCTATTCTA 720
Query 835 TGCTTGGTCTTGGTGACATTGTCATTCCGGGTATTTTCGTTGCACTAGCTCTAAGATTTG 894
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 721 TGCTTGGTCTTGGTGATATTGTCATTCCAGGTATTTTTGTTGCACTAGCTCTAAGGTTTG 780
Query 895 ATGTGTCAAGACGTAGACAACCACAATACTTCACAAGTGCATTTATCGGATACGCTGTTG 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATGTGTCAAGACGTAGACAACCACAATACTTCACAAGTGCATTTATCGGATACGCTGTTG 840
Query 955 GTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGCCTGCTTTGTTAT 1014
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 841 GTGTTATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCCCAGCCTGCTTTGTTAT 900
Query 1015 ACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCACTGCATTTGGAACGGTGACATCA 1074
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 901 ACATTGTCCCAGCCGTAATTGGGTTTTTGGCTTCTCACTGCATTTGGAACGGTGACATCA 960
Query 1075 AACCGTTGTTGGCGTTTGATGAATCAAAGACAGAGGAAGCAACGACTGATGAATCAAAGA 1134
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 961 AACCGTTGTTGGCGTTTGATGAATCAAAGACAGAGGAACCAAAGACTGATGAATCAAAGA 1020
Query 1135 CTAGTGAGGAGGTTAATAAAGCTCATGATGAATGAGGAAAAATCGAGAAAGAAGGGCAGA 1194
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1021 CTAGTGAGGAGGTTAATAAAGCTCATGAAGAATGAGGAAAAATCGAGAAAGAAGGGCAGA 1080
Query 1195 GGAGAAATATATACACATAAATGTGTCTTAATATATGGAACAAGAAGGAAAACAATTTTG 1254
||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1081 GGAGAAATATATACACAGAAATGTGTTTTAAAATATGGAACAAGAAGGAAAACAATTTTG 1140
Query 1255 TTTCCAAATGATCATCAATCAGTCCCTTCTAACCCCttttttgttttttt-AGATTTTCA 1313
||||||| |||| |||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1141 TTTCCAA-TGATGATCAATCAGTCCCTTCTAACCC-TTTTTTGTTTTTTTTAGATTTTCA 1198
Query 1314 AACTTTCTTTTGGCCAAGACTTGTGTAAG 1342
|||||||||||||| ||||||||||||||
Sbjct 1199 AACTTTCTTTTGGCAAAGACTTGTGTAAG 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53288252755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5