BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G03130.1

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484221 jgi|Araly1|484221|fgenesh2_kg.5__213__AT2G03130.1          196    6e-50


> Ahg484221 jgi|Araly1|484221|fgenesh2_kg.5__213__AT2G03130.1
Length=309

 Score =  196 bits (106),  Expect = 6e-50
 Identities = 120/127 (94%), Gaps = 0/127 (0%)
 Strand=Plus/Plus

Query  1    ATGAGAGTACTGAGGGACGGCCAAAGTGGTGGTGGTGCCAATGAGGGAGCTAAAGCGGAG  60
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1    ATGAGAGTACTGAGGGACGGCCAAAGTGGTGGTGGTGCCAATGAGGGAGCCAAAGCGGAG  60

Query  61   AAGACTGTGTTTGAGGTTAAACTTGAGTCTTTCGAGGCACGTGCGAAAATCAAGATCATT  120
            |||||||| |||||||||||||| |||||||||||  || ||||||||||||||||||||
Sbjct  61   AAGACTGTTTTTGAGGTTAAACTGGAGTCTTTCGACCCATGTGCGAAAATCAAGATCATT  120

Query  121  AAGGAGG  127
            | |||||
Sbjct  121  ATGGAGG  127



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11790077001


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5