BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03140.2
Length=5768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936095 jgi|Araly1|936095|scaffold_500286.1 7461 0.0
> Ahg936095 jgi|Araly1|936095|scaffold_500286.1
Length=5462
Score = 7461 bits (4040), Expect = 0.0
Identities = 5007/5458 (92%), Gaps = 129/5458 (2%)
Strand=Plus/Plus
Query 68 TTTCTGCTTTTGAAATTCAAGATGTACTCGTCGTCGTC--C-TCTTCTTCTATTTTTCTT 124
||||| |||||||||||||| ||||||||||||||||| | ||||||||||||||||||
Sbjct 1 TTTCTACTTTTGAAATTCAACATGTACTCGTCGTCGTCGTCATCTTCTTCTATTTTTCTT 60
Query 125 CAATTTCCACCGGCGAGAATAACCACCGCGTCTCCATTTATACTCCGCCGTAGCAGGAAG 184
||||| || ||| |||||| ||||||||||||||||||||| |||||||||||| |
Sbjct 61 CAATTCCCGCCGACGAGAACAACCACCGCGTCTCCATTTATTCTCCGCCGTAGCTCTTA- 119
Query 185 CGAGGAGCTC-GTTTTAAACGACAGA-GTCGGAATTT--A-G--TTCTTGTGAATTCGTC 237
|| | | | || ||| || || | ||| | | ||| |||||||||||
Sbjct 120 CGTGTTTCACACCAGGAAGCGA-GGACCTC-G-TTTTAAACGACATCTAGTGAATTCGTC 176
Query 238 AATTTTCCCTCCGCC-TTTCGATGGCAGCGTTCCTCTCGATTCCTCCTTAGCTCCATCTC 296
||||||||||||||| ||| |||||||||| |||||||||| | ||| ||||| ||| |
Sbjct 177 AATTTTCCCTCCGCCGTTT-GATGGCAGCGGTCCTCTCGATGCTTCCCTAGCTTCAT-T- 233
Query 297 TCGCCGGAATCGCTTCCGGCTTAGCCGTTTATTTATCGTCGAGGTTTTTTGGAAAG-TCT 355
| | ||||||| |||||||| |||| ||||||||||||||| ||||| ||| |||
Sbjct 234 T---C----TCGCTTCAGGCTTAGCGGTTTTTTTATCGTCGAGGTTATTTGG-AAGATCT 285
Query 356 TTGGAGA--A--GAT--TAGT-G-A-TA-AA-ATC-GTTGATGATGTTGTTGTTGGGGAA 403
|| |||| | ||| ||| | | | || ||| | | ||||| |||||||||||||
Sbjct 286 TTAGAGATTAGTGATACAAGTAGAAGAAGAAGATCAATCGTTGATGATGTTGTTGGGGAA 345
Query 404 TGGATTCTTTTCACCACTCCGACGCCGTTTAACAGATTTGTTCTTCTTCGTTGTTCTTTG 463
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 346 TGGATTCTTTTCACTACTCCTACGCCGTTTAACAGATTTGTTCTTCTTCGTTGCTCTTTG 405
Query 464 CTCTCCTTTGATGATGACTCTGAGAAGAGTTTAAGCGATAGACTTGTCACAGAGGAGAGG 523
||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct 406 CTCTCCTTTGATGATGACTCTGACAAGAGTTTAAGCGATAGACTCCTCACAGCGGAGAGG 465
Query 524 CATTTCGTTACTTTGGATAGTGGGAAGATTGTAAGAGA-CGGTGCTGTTACGGATGAGAA 582
|||||||||| |||||||| || |||||| | | | | | |||| | ||||||||
Sbjct 466 CATTTCGTTAATTTGGATACCGGCAAGATTAT-TG-TATC-G-GCTG---CCGATGAGAA 518
Query 583 GA---CTCCGTTGGAGTATCAGAGGGTTTGTATCACTATGGAGGATGGTGGAGTTGTCTC 639
|| ||||||||||||||||||||||||||||||||| ||||| || || ||| | ||
Sbjct 519 GACTCCTCCGTTGGAGTATCAGAGGGTTTGTATCACTACCGAGGACGGCGGCGTTCTTTC 578
Query 640 GCTAGATTGGCCTGCTAATTTGGACATTAGGGAGGAGCGTGGATTGGATACAACGGTGGT 699
||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 579 GCTTGATTGGCCGGCTAATTTGGACATTAGGGAGGAGCGTGGGCTGGATACAACGGTGGT 638
Query 700 TTTCATCCCGGGAACGCCGGAAGGCAGTATGGAAGAAGGCGTTAGATCGTTTGTATGCGA 759
||||||||||||||||||||| || |||||||| ||||||||| |||||||| |||||||
Sbjct 639 TTTCATCCCGGGAACGCCGGATGGTAGTATGGATGAAGGCGTTCGATCGTTTCTATGCGA 698
Query 760 AGCTCTGAGGCGAGGCGTGTTTCCTGTGGTTATGAACCCTAGAGGCTGTGCTGGTTCGCC 819
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 699 AGCTCTGAGGCGAGGCGTGTTTCCTGTGGTCATGAATCCTAGAGGTTGTGCTGGTTCGCC 758
Query 820 TCTCACTACACCTCGGTTGTTTACAGCTGGTGATAGTGATGATATATCCACTGCTTTGCG 879
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 759 TCTCACTACACCTCGGTTATTTACAGCTGGTGATAGTGATGATATATCCACAGCTTTGCG 818
Query 880 ATTCTTAAGCAAGACAAGGCCATGGACGACACTTACGGCCGTTGGCAGAGGATATGGTGC 939
|||||||| ||||||||||||||||||||| |||||||| |||||| |||||||||||||
Sbjct 819 ATTCTTAACCAAGACAAGGCCATGGACGACTCTTACGGCTGTTGGCCGAGGATATGGTGC 878
Query 940 AAATATGTTGACGAAATATCTTGCGGAAGCAGGGGAAAGAACGCCTCTTACAGCTGCTGT 999
|||||||||||| ||||| || || || || ||||||||||| |||||||||||||||||
Sbjct 879 AAATATGTTGACAAAATACCTGGCAGAGGCTGGGGAAAGAACACCTCTTACAGCTGCTGT 938
Query 1000 ATGCATTGATAATCCCTTTGACCTTGAGGAGATCACACGGACATCTCCGTATTCTACTAG 1059
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 939 TTGCATTGATAATCCCTTTGACCTTGAGGAGATCACACGAACATCTCCGTTTTCTACTAG 998
Query 1060 TTTGGATCAACAGCTTACAAGGGGATTAGTTGAGATACTGCTGGCAAACAAGGAGCTTTT 1119
||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| ||
Sbjct 999 TTTGGATCAACAGCTTACAAGTGGATTAGTAGAGATACTGGTGGCAAACAAGGAGCTATT 1058
Query 1120 TCAAGGCAGAGCAAAAGCATTTGATGTTGGAAAGGCTCTGTGTTCAAAGTCAGTTCGCGA 1179
|||||||||||||||||| |||||||||||||||||| ||| |||||| |||||||||||
Sbjct 1059 TCAAGGCAGAGCAAAAGCCTTTGATGTTGGAAAGGCTTTGTCTTCAAAATCAGTTCGCGA 1118
Query 1180 ATTTGATAAAGCCTTGTCCATGGTGACATATGGTTGCGAGAGTATAGAAGATTTCTATTC 1239
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 ATTTGATAAGGCCTTGTCCATGGTGACATATGGTTGCGAGAGTATAGAAGATTTCTATTC 1178
Query 1240 CAGTTGTGCCACCAGAGAGGTGATTGGGGAAGTAAAAGTTCCTCTCCTCTTTATACAGAA 1299
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1179 CAGTTGTGCCACAAGAGAGGTGATTGGGGAAGTAAAAGTTCCTGTCCTCTTTATACAGAA 1238
Query 1300 TGACGATGTAGTACCACCTTATACAATACCACGAAGTTCAATAGCTGAAAACCCATTTAC 1359
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1239 TGACGATGTAGTACCACCGTATACAATACCACGAAGTTCAATAGCTGAAAATCCATTTAC 1298
Query 1360 AAGCCTGCTTCTGTGCTCTTCTTCACCAAATCTGATCGATGGACGTACAGTGGCCGTGTC 1419
|||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1299 AAGCCTGCTTATGTGCTCTTCTTCACCAAATCTGATCGATGAACGTACAGTGGCTGTGTC 1358
Query 1420 TTGGTGCCAGGACCTTGC--T--AG-T-GA---------GT-GGT--TG-ACTG-----C 1455
|||||||||||||||||| | || | || || || || | || |
Sbjct 1359 TTGGTGCCAGGACCTTGCGATTGAGATTGATTTTCCTATGTCGGCCATGCAGTGGTTGAC 1418
Query 1456 TG-T--AGAACTTGGGCTTCTGAAAGGTCGTCATCCACTTTTGGAAGACGTGGATGTTAC 1512
|| | ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1419 TGCTGTAGAACTTGGGCTTCTGAAAGGTCGTCATCCACTTTTGAAAGACGTGGATATTAC 1478
Query 1513 TGTTAACCCTTCAAAGGGATTAGTTTTTTCGGAAGCCAGAGCACCTGAAAAAAGTATCGG 1572
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1479 TGTTAACCCTTCAAAGGGATTAGTTTTTTCGGAAGCCAAAGCACCTGAAAAAAGTATCGG 1538
Query 1573 TGCCAAGAAGCTGGTACAGGCAGCCCATGAAAAGACGGTGAATGGTTACCATCTAGATCC 1632
|||||||||||| ||||| ||||| | ||||||| |||||||||||||||| | |||||
Sbjct 1539 TGCCAAGAAGCTCGTACAACCAGCCGACGAAAAGATGGTGAATGGTTACCATGTTGATCC 1598
Query 1633 TTTCAGGGAAACACTTGAAGACAGTGACATGACCCCAAACTCGAATTTGTCGCCTGAAAC 1692
|||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||
Sbjct 1599 TTTCAGGGAAACACTTGAAGACAGTGACATCAGCCCAAACTCGAATTTGTCGTCTGGAAT 1658
Query 1693 AGATTTAGAAAAGAATGTCAAAATCGATTATGGATCTGATGAAACAGAAAATAATATAGT 1752
||||||||||||||||||||||| |||||||||| |||||||||||||||||| || |||
Sbjct 1659 AGATTTAGAAAAGAATGTCAAAAGCGATTATGGAGCTGATGAAACAGAAAATAGTAGAGT 1718
Query 1753 TTCCACAAG-AGT-T-G---AA-T-----CAATCGAAGATAATGAGTCCAACGTAGAAGA 1800
||| ||||| ||| | | || | |||||||||||||||||||||| ||||||||
Sbjct 1719 TTCAACAAGCAGTCTTGTTGAAGTTGAATCAATCGAAGATAATGAGTCCAATGTAGAAGA 1778
Query 1801 AAGTGATAGAGGGCAGGTGTTGCAGACTGCAGAAGTTGTTGTGAGCATGCTAGATGTAAC 1860
|||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1779 AAGTGATAGAGGTCAGGTGTTGCAGACTGCAGAAGTGGTTGTGAACATGCTAGATGTAAC 1838
Query 1861 CATGCCTGGGACCCTAAAAGCTGAAGAGAAGAAAAAGGTTATGGATGCTGTTGGTCGGGG 1920
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1839 CATGCCTGGCACCCTAAAAGCTGAAGAAAAGAAAAAGGTTATGGATGCTGTTGGTCGAGG 1898
Query 1921 AGAGACAGTACTAACAGCACTGCAAGATGCTGTGCCAGAAGACGTTCGTGAGAAGCTTAC 1980
||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1899 AGAGACAGTTCTAACAGCACTGCAAGATGCCGTGCCAGAAGAAGTTCGGGAGAAGCTTAC 1958
Query 1981 AACAGCTGTAACTGGGATCTTGCAGTCAGGTGGCACTAAATTAAATCTTGAAAATCTTAA 2040
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1959 AACAGCAGTAACTGGGATCTTGCAGTCAGGTGGCACTAAATTAAATCTTGAAAAGCTTAA 2018
Query 2041 GCTTCCTAGTATAGCACCAGGATTAAAGAAAGCGGAGGAAGAAAAG-AAAGAAACATCAA 2099
|||||||||||||||||||||||| |||||||||||||||| || | |||||| ||||||
Sbjct 2019 GCTTCCTAGTATAGCACCAGGATTGAAGAAAGCGGAGGAAGCAA-GTAAAGAACCATCAA 2077
Query 2100 GTGCCATAGGTCAAAGTGATTCTTATTCTCCTGATCCGAAAGATAAGAGCGATGGTTTGG 2159
||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 2078 GTGCCATAGGTCAAAAAGATTCTCATTCTCCTGATCCGATAGATAAGAGCGATGGTTTGG 2137
Query 2160 TGAGTGGCTCAGATGAAACTATTAGTGGCTCGGATAATTCTCCAGGTGGAGTAGAACTAG 2219
|||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 2138 TGAGTGGCTCAGATGAAACTGTTAGTGGCTCGGATAATTCTTCAGGTGGAATAGAACTAG 2197
Query 2220 AGCATTCCCCTTCAAAGGTTTCTCAGAGAAACAGTGATTCTGGAAAGTCCCAACCCGTTG 2279
||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||| |
Sbjct 2198 AGCATTCCCCTTCCAAGGTTTCCCAGAAAAACGGTGATTCTGGAAAGTCCCAACCCGTCG 2257
Query 2280 ACAATGATCAAGATGATAGTCCTGGAAATCACGAGTCACATACTAATGAAAAGACCAGTG 2339
||| ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||
Sbjct 2258 ACAGTGATCAAGATGATAGTCTTGGAAATTACGAGTCACATACCAATGAAAAGACCAGTG 2317
Query 2340 CAGCTGATGATTCTGAGATGGCTTCCGAAGCAAAAAGTGATAGTGCTAACCAGGGGCCAA 2399
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 2318 CAGCTGATGATTCTGAGATGGCTTCCGAAGCAAAAAGTGATATTGCCAACCAGGGGTCTG 2377
Query 2400 TTGGTGCAGAGGCGGTCACTAATAATGATGACAAAGTGGAGCAAGGTTCTGGAGTAGCTA 2459
|||| ||||||| |||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 2378 TTGGCGCAGAGGATGTCACTAATAGTGATGACAAAGTGGACCAAGGTTCTGGAGTAGCTA 2437
Query 2460 CACATCAAGGACAGGTAGAAACTAGTAAAAACGATGAGAAAGGAGCTCCAATTGCCAATG 2519
| |||||| ||||||||||||| | ||||||||||||||||||||| |||||||||| ||
Sbjct 2438 CGCATCAAAGACAGGTAGAAACGAATAAAAACGATGAGAAAGGAGCACCAATTGCCAGTG 2497
Query 2520 AAAAATCCAGTGTAGCTGATGGTTTCGAGAAGGCTTCAGATGCAAAGAATGATAGTACCA 2579
||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||
Sbjct 2498 AAAAATCCAGTGTAGCTGATGCTTCCGAGAAGGCTTCAGATGCAAAAAATGATAGTACCA 2557
Query 2580 ACCCACAGCCAGTTGGGGCAGACGATATAACTAGTGATGGGGACAAAGTGGACCAAGGTG 2639
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2558 ACCCACAGCCAGTTGGTGCAGACGATATAACTAGTGATGGGGACAAAGTGGACCAAGGTG 2617
Query 2640 TTGTACTAGCTCAACAACAAAGAAAGGATGAAACTAGTAAAAGTGATGAGAATGCAAAAC 2699
|||||||||||| ||||||| |||||| ||||||| ||||| |||||||||||||||||
Sbjct 2618 CTGTACTAGCTCAGCAACAAAAAAAGGAGGAAACTAATAAAAATGATGAGAATGCAAAAC 2677
Query 2700 AGTCTGCCACAGATCAAAACAAGGTGACATCTACCGACAATGAAGGAGATGCTGGAAAAT 2759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2678 AGTCTGCCACAGATCAAAACAAGGTGACATCTACCGACAATGAAGGAGATGCTGGAAAAT 2737
Query 2760 CTTCTGCTTCACAGCCTGTAGAGAAAGATGAAAGTAATGATCAGAGCAAAGAAACCAAAG 2819
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2738 CTTCTGCTTCACAGCCTGTAGAGAAAGACGAAAGTAATGATCAGAGCAAAGAAACCAAAG 2797
Query 2820 TTATGCAGCCTGTATCAGACCAAACTAAGCCAGCAATTCAGGAACCAAATCAGCCCAATT 2879
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2798 TTATCCAGCCTGTATCAGACCAAACTAAGCCAGCAATTCAGGAACCAAATCAGCCTAAAT 2857
Query 2880 TTAATGTGTCCCAAGCATTTGAGGCATTGACAGGGATGGATGATTCAACCCAGGTAGCTG 2939
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 2858 TTAATGTTTCCCAAGCATTTGAGGCATTGACGGGGATGGATGATTCAACTCAGGTAGCTG 2917
Query 2940 TCAATAGTGTTTTCGGTGTGCTCGAAAACATGATTTCTCAGCTGGATGAAGaaaaaaaaG 2999
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2918 TCAATAGTGTTTTTGGTGTGCTCGAAAACATGATTACTCAGCTGGATGAAGAAAAAAAAG 2977
Query 3000 AAGGAAATGAGGTAAGTGATGAGAAGAATCTCAAGGATGAGAAGAATCTCAAGGATGCGA 3059
||||||||||||||||||||||||||||||||||||||||||||| || | | | |
Sbjct 2978 AAGGAAATGAGGTAAGTGATGAGAAGAATCTCAAGGATGAGAAGA--CT---G--T-C-A 3028
Query 3060 AGAATGTCACGAATGAGGTAGTGTC-TCCATCTGAAGAGGAAATTCCCTACAAGAGAGAA 3118
|||||| | | | | | |||| | |||||||||||||||||||| ||||||||||
Sbjct 3029 AGAATG--AGG--T-A---A-TGTCCTT-ATCTGAAGAGGAAATTCCCTCCAAGAGAGAA 3078
Query 3119 ACCAAAAGCCTTATGCCCTCTGCAAAATCACGTGATCCTGCATGCAGTGTGAGTGAAACT 3178
| |||||||||||||||||| |||||| | ||||||||||||||||||| |||||||
Sbjct 3079 ATTGAAAGCCTTATGCCCTCTGAAAAATCTCAAGATCCTGCATGCAGTGTGAATGAAACT 3138
Query 3179 GAAAAATGTTCTGACAATGATAAGGTAACAGGGGTAGTGATTGAAAAACAATTGGGCAGA 3238
|||||||||||||||| ||| |||||||| |||||| ||| ||||||||| |||||||||
Sbjct 3139 GAAAAATGTTCTGACAGTGAAAAGGTAACTGGGGTAATGACTGAAAAACATTTGGGCAGA 3198
Query 3239 GATGAATTTGTGATTGGTAAGCATTCACCGAAGATTCTGCCAGAAAGAAAAACAGATTCT 3298
||||| | |||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 3199 GATGA-T--GTGATTGGTAAGCATTCACCGAAGATTCTGCCTGAAAGAATTACAGATTCT 3255
Query 3299 ATCGAAAATTCTTCTCATGATGGATACCTTGGGGAGGAACTTTCAAAGGAAAAGATTGCA 3358
||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3256 GTCGAAAAATCTTCTAATGATGGATACCTTGGGGAGGAACTTTCAAAAGAAAAGATTGCA 3315
Query 3359 AAACAGTTAGATTTAGATACAACCACTGCTCTCATGCTTGACTATTATCCAGAGGAAGGT 3418
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3316 AAACAGTTAGACTTAAATACAACCACTGCTCTCATGCTTGACTATTATCCAGAGGAAGGT 3375
Query 3419 AAATGGAAACTCCTTGATCAGCAACCAAAACGCTTG-GATGATGACTATTACCCAGAGGA 3477
|||||||||||||||||||| |||||| ||| |||| | |||| ||||||| ||||||||
Sbjct 3376 AAATGGAAACTCCTTGATCAACAACCAGAACACTTGAG-TGATAACTATTATCCAGAGGA 3434
Query 3478 AGGTAAATGGAAGCTACTAGATCAACAACCAGAATACTTGGGTAACGTTGCTGACAATGC 3537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3435 AGGTAAATGGAAGCTACTAGATCAACAACCAGAATACTTGGGTAACGTTGCTGACAATGC 3494
Query 3538 AGCAGCCAGCAGAAATACACACGATAATGTACAGGTTCATTCCCTTAGTGTAGATAATGA 3597
||||||||||||| |||| ||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 3495 AGCAGCCAGCAGAGATACGCACGAAAATGTTCAGGTTCATTCCCTTAGTGTAGGTAATGA 3554
Query 3598 AGAGACCATT---GAGCCTTCATATGTGATAGTGGACCATGAACAAGAGTTGGAGCTCTC 3654
| ||| |||| |||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 3555 AAAGAACATTATTGAGCCTTCATATGTGATATTGGACCATGAAAAAGAGTTAGAGCTCTC 3614
Query 3655 TGGAATGCATGATGCAGCAGACAATCAAAATGATGGTCCTCACAAATTAGACGAAGGATG 3714
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3615 TGAAATGCATGATGCAGCAGACAATCAAAATGATGGTCCTCACAAATTAGACGAAGGATG 3674
Query 3715 TGAGGAATTAGAGCACCTCATTAATGTTATTGTATCAGACTCTTTGAATGTAGAAATTCA 3774
||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 3675 TGAGGAACTAGAGCACCTCATTAAAGTTATTGTATCAGACTCTTTGAATGTTGAAGTTCA 3734
Query 3775 GCGCAGGATGGGTTCAGCTGGCATGAGGCAAATTGAGTCTCAACTCAGTCGAGATATAAA 3834
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3735 ACGCCGGATGGGTTCAGCTGGCATGAGGCAAATTGAGTCTCAACTCAGTCGAGATATAAA 3794
Query 3835 AAAGGTGGCAAAGACATTTTCTTATGCTGTTGTATACTCA-GAGCCTACTTGGACTTTCA 3893
|| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 3795 AATGGTGGCAAAGACATTTTCTTATGCTGTTGTATA-TGAAGAGCCTACTTGGACTTTCA 3853
Query 3894 AAAGGAATAGCAAAACTTCCAATGTCCCTGCTGGAAAAGTAGGTAAACTTCGTGGGGACG 3953
||||||| |||||| ||||||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 3854 AAAGGAACAGCAAAGCTTCCAATGGCCCAGCTGGAAAAGTAGGTAAACTTCATGGGGACG 3913
Query 3954 CTATCATTAGGGCAATTGCATCTGCTGTCCAGGAGGCGCATTTTCTCAGACAAGTACTGC 4013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3914 CTATCATTAGGGCAATTGCATCTGCTGTCCAGGAGGCGCATTTTCTCAGACAAGTACTGC 3973
Query 4014 CAATTGGTGTTGTTGTTGGCTCTGTTTTAGCTGCTCTGAGAAAATATTTCGATGTATCTA 4073
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3974 CTATTGGTGTTGTTGTTGGCTCTGTTTTAGCTGCTTTGAGAAAATATTTCGATGTATCTA 4033
Query 4074 CAACAACCAACAATGCTAAGAGAGATGTTGTCCCGGGTAGAAGACAAAAGTACGAGAACA 4133
||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 4034 CAACAACCAGTAATGCTAAGAGAGATATTGTCCCGGGTAGAACACAAAAGTACGAGAACA 4093
Query 4134 ATGGTGCAATGGCGAGTGTTTTGCCAGACAAAGTGAGC-AAGGAGACCAAACAAAACAAC 4192
|||||| || |||||||||| ||||||||||| | ||| ||| ||||| ||||||||||
Sbjct 4094 ATGGTGTAAAGGCGAGTGTTGTGCCAGACAAAATTAGCCAAG-AGACCGAACAAAACAAA 4152
Query 4193 TCGAGCATTGGAGAAATGGTGGAATCTGGCTTGCAAAGTATT-AACAATAAAAGTG-CTA 4250
|||||||||||||||||||||||||||||| || ||| ||| |||||| | ||| | |
Sbjct 4153 TCGAGCATTGGAGAAATGGTGGAATCTGGCCTGAAAAA-ATTTAACAATGAGGGTGTC-A 4210
Query 4251 TGGTTGGTGCTGTAACAGCTGCTTTGGGAGCATCTGCTATGCTGGTTCAACACGAGGATC 4310
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 4211 TGGTTGGTGCTGTAACCGCTGCTTTGGGAGCATCTGCTATGCTGGTTCAACACGAGGATC 4270
Query 4311 CACAAAGAGGTGGCATCATGTCAAAATCATCGGATAAAGATAGTCAACAGAAAGAATCTG 4370
|||||| ||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 4271 CACAAAAAGGCGGCATCATGTCAAAATCATCGGAGAAAGATAGTCAACATAAAGAATCTG 4330
Query 4371 GACAACTTGATCAGAGTAGTATGGTGGGAAGTTTTGCTGAGAAAGCTATGTCCATAGCTG 4430
|| |||||||||||| ||||| |||| |||||||||||||||||| |||||||||||||
Sbjct 4331 GAAAACTTGATCAGAACAGTATAGTGGCAAGTTTTGCTGAGAAAGCCATGTCCATAGCTG 4390
Query 4431 GTCCTGCTGTTCCGACAAAGGAAACTGGTGAAGTGGATCAGGATAGGATTGTGGCAATGT 4490
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4391 GTCCTGCTGTTCCAACAAAGGAAACTGGTGAAGTGGATCAGGATAGGATTGTGGCAATGT 4450
Query 4491 TGGCAGACTTGGGTCAGAGGGGTGGCATATTGAGTTTAGTTGGAAAACTTGCTCTGCTTT 4550
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 4451 TGGCAGATTTGGGTCAGAGGGGTGGCATATTGAGGTTAGTTGGAAAACTTGCTCTGCTTT 4510
Query 4551 GGGGTGGCCTTCGGGGTGCTATGAGTTTAACTGATAGGCTAATCCAGTTTTTGCACATGG 4610
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 4511 GGGGTGGCCTTCGTGGTGCTATGAGTTTAACTGATAGGCTAATCCAGTTTTTGCGCATGG 4570
Query 4611 ATGAGTGGCCCTTGCTCAAGAGGGCTGTGGGCTTTATTGGCATGGTGCTCGTTTTATGGT 4670
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 4571 ATGAATGGCCCTTGCTCAAGAGGGCTGTGGGCTTTATTGGCATGGTGCTTGTGTTATGGT 4630
Query 4671 CACCGGTTGTGATTCCATTGCTTCCAACACTTCTCCAGAACTGGTCTACAAGTAATCCTT 4730
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 4631 CACCGGTTGTGATTCCATTGCTTCCAACACTTCTCCAGAGCTGGTCCACAAGTAATCCTT 4690
Query 4731 CTAGAGTGGCAGAACTAGCTAGTGTAGTCGGTCTCTATGTTGCTGTATTCATTCTTGTTA 4790
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 4691 CTAGAGTGGCGGAACTAGCTAGTGTAGTTGGTCTCTATGTTGCTGTATTCATTCTTGTTA 4750
Query 4791 TGCTGTGGGGAAAGAGAGTACGGAAGTACGAAAACCCATTCAAGCAATATGGGCTTGATT 4850
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 4751 TGCTGTGGGGAAAAAGAGTACGGAAGTATGAAAACCCATTCAAGCAATATGGGCTTGATT 4810
Query 4851 TAAAGGCATCAAACAAAGAAAAGATTCAAGAGTTTTTAAAGGCCTTTGCAGGGGGCATCA 4910
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4811 TTAAGGCATCAAACAAAGAAAAGATTCAAGGGTTTTTAAAGGCCTTTGCAGGGGGCATCA 4870
Query 4911 CGGTCGTTCTACTAATTCAGTTCATAAATGCAATATCAGGAGCTGCG-TTTCTTTCTCGG 4969
| |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||
Sbjct 4871 CAGTCGTTCTACTAATACAGTTCATAAATGCAATATCAGGAGCTGCGATTT-TTTCTCGA 4929
Query 4970 CCACCATATTTTCCACATTCTTTTGATGCCATGAAGTGGCTTAAGGGATGTGGGCAATTT 5029
|| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 4930 CCGCCATATTTTCCACATCCTTTTGATGCCATGAAGTGTCTTAAGGGATGTGGGCAATTT 4989
Query 5030 CTTCTGCTGATAATTAGAGGATTTACAGCTGCGACATTTGTAGTGCTTGTGGAAGAGTTG 5089
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 4990 CTTCTGCTGATAATTAGAGGATTTACAGCTGCGACATTTGTTGTGCTTGTGGAAGAGTTG 5049
Query 5090 CTCTTCAGATCTTGGATGCCTGCCGAGATTGCTATAGATCTGGGCTACCATCAAAGCATT 5149
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5050 CTCTTCAGATCATGGATGCCTGCCGAGATTGCTATAGATCTGGGCTACCATCAAAGCATT 5109
Query 5150 ATCATTACAGGACTCATATTTGCCTTGTTCCAGAGATCCCTGAGATCAATTCCAGGGTTT 5209
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 5110 ATCATTACAGGACTCATATTTGCCTTGTTCCAAAGATCCTTGAGATCAATTCCAGGGTTA 5169
Query 5210 TGGCTTCTGTCGTTGGCGCTTACTTGGGCTCGTGAAAGAAGCCAAGGAAATCTAATTGTT 5269
||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 5170 TGGCTTCTGTCATTGGCGCTTGCTGGGGCTCGTGAAAGAAGCCAAGGAAATCTAATTGTT 5229
Query 5270 CCAATTGGGTTGCGGGCAGGAATCATAGCATCAAGCTTTATACTACAGTCAGGTGGATTC 5329
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 5230 CCAATTGGGTTGCGGGCCGGAATCATAGCAACAAGCTTTATACTACAGTCAGGTGGATTC 5289
Query 5330 CTCACTTACAACCCAAGTTCCCCGGTTTGGATTGCAGGGAGCCGCCCATCACAGCCTTTT 5389
||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 5290 CTCACCTACAACCCAAGTTCCCCGGTTTGGATTGCAGGGAGCCGCCCTTTACAGCCTTTT 5349
Query 5390 AGTGGAGTTGTTGGTCTTATGGTCTCTTTGGCGTTGGCACTTATTCTTTATCCGAAAC 5447
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 5350 AGTGGAGTGGTTGGTCTTATGGTCTCGTTGGCGTTGGCACTCATTCTTTATCCGAAAC 5407
Score = 67.6 bits (36), Expect = 1e-09
Identities = 50/57 (88%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 3399 ACTATTATCCAGAGGAAGGTAAATGGAAACTCCTTGATCAGCAACCAAAACGCTTGG 3455
|||||||||||||||||||||||||||| || || ||||| |||||| || |||||
Sbjct 3419 ACTATTATCCAGAGGAAGGTAAATGGAAGCTACTAGATCAACAACCAGAATACTTGG 3475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 218488526593
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5