BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03150.1
Length=4398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484223 jgi|Araly1|484223|fgenesh2_kg.5__215__AT2G03150.1 6551 0.0
> Ahg484223 jgi|Araly1|484223|fgenesh2_kg.5__215__AT2G03150.1
Length=4341
Score = 6551 bits (3547), Expect = 0.0
Identities = 4129/4401 (94%), Gaps = 76/4401 (2%)
Strand=Plus/Plus
Query 5 TCTTTACTTTCTCTTCTTCACAGCAAACTAATCCTCAAACCATTCTCTCAAGCTCGTCTT 64
|||||||||||||||||||||| ||||||||||||| || | | | | | ||||
Sbjct 1 TCTTTACTTTCTCTTCTTCACAACAAACTAATCCTC-AA--A----C-C-A--T--TCTT 47
Query 65 CTTCCTCTATCTGTGATTTCTAGGGttttgttttttccctttttAATCTCTCAATTGCTT 124
||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 48 CTTCCTCAATCTGTGATTTCTAGGGTTTTGTTTTCT-CCTTTTTAATCTCTCAATTGCTT 106
Query 125 AGTCTCTTCC-TCTTCTCTCAACACGTAAGACACGCAAAGAAGAAA-CAATTTTTCAATC 182
|||||||||| || ||| ||||||||| ||||||||||||||||| ||| |||||||||
Sbjct 107 AGTCTCTTCCTTC-TCTGTCAACACGT--GACACGCAAAGAAGAAACCAA-TTTTCAATC 162
Query 183 TTCTTGTAGATGCATAGAGATATGTATTCTTCAAGAGGCACTGGCTACGGTCAACAGCAA 242
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 163 TTCTTGTAGATGCATAGAGATATGTATTCTTCAAGAGGGACTGGCTACGGACAACAGCAA 222
Query 243 TACGGTTCGCAATCTGGTTATTCTCAGAATCTTGGATCTGGCTATCCTGGAAGTTCAGTG 302
||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 223 TACGGTTCGCAATCTGGTTATGCTCAGAATCTTGGATCTGGTTATCCAGGAAGTTCAGTG 282
Query 303 AGTGGTGGC-GCAGAAGGAGGCTCTCAGATTTCTTTGAGTTCTCGCCATCCATCAATTAC 361
|||||| || | || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 283 AGTGGT-GCAGAAGGAGGAGGCTCTCAGATTTCTTTGAGTTCTCGCCATCCTTCAATTAC 341
Query 362 AGGTGCTCCTCAAGAGACTGACATTGGTGGTGGATACAGATCTCATTTATCTACAGCTGC 421
||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct 342 AGGTGCTTCTCAAGAGACTGACATTGGTGGTGGATATAGAACTCATTTATCCACAGCTGC 401
Query 422 TAGTCATTACGGAACACAATATGGCTCTGTGTATGGATCAACTTCTCTTAGCAGCTCTCA 481
|||||||||||||| || ||||||||||| || |||||| |||||||||||||||||||
Sbjct 402 GAGTCATTACGGAACGCAGTATGGCTCTGTCTACGGATCATCTTCTCTTAGCAGCTCTCA 461
Query 482 GCCTTTAAGCACCAATGGTTTAGGTTCATCAGTTTTGGATAACCGCTCGGGATATGTCCC 541
||||||||| |||||||| |||||||||||||| ||||| |||||||| |||||||| ||
Sbjct 462 GCCTTTAAGTACCAATGGCTTAGGTTCATCAGTCTTGGACAACCGCTCTGGATATGTTCC 521
Query 542 TACTTTACCTGATTCACCAAAGTTTGCATCTGGAAGCTATTTGTCTCCCTCGAGCCATGG 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 522 TACTTTACCTGATTCACCAAAGTTTGCATCTGGAAGCTATTTGTCTCCCTCGAGTCATGG 581
Query 602 TTATGGTCAAAAGACGGACGATTTGTATTCCGATAAGCTGTCTGGTTACATTCCCGTTGA 661
||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 582 TTATGGTCAAAAGGCGGATGATTTGTATTCGGATAAGCTGTCTGGTTACATTCCTGTTGA 641
Query 662 TAGAAGGCAGTATGGTGAACAATCAAGCTCTTATCTCGGTAGGGAGTTGCAAAATGAACC 721
|||| ||||||||||||||| ||||| ||||| | |||||||||||||||||||||||
Sbjct 642 TAGACGGCAGTATGGTGAACGGCCAAGCGCTTATATGGGTAGGGAGTTGCAAAATGAACC 701
Query 722 AACTAGGCGATATGCTGATCCATCTAATTTTGCTCGCCAGACTGACTTGTATGATCGCAT 781
|||||| |||||| ||||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct 702 AACTAGTCGATATCCTGATTCATCTAATTTTACTCGTCAGACTGACTTGTATGATCGCAT 761
Query 782 TGATCAAGCATCGCTTCTCCGAGGAGAACAATTATTAAAAATGCAGTCGCTTCATACCTC 841
||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 762 TGATCAAGCATCGCTCCTCCGAGGAGAACAATTATTAAAAATTCAGTCGCTCCATACCTC 821
Query 842 TTCTGTTGATGCAGGTGTCAACAGACAAACCGATTATCTTACAGAACGAAGTTCTACTGT 901
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 822 TTCTGTTGATGCAGGTGTCAACAGACAAGCCGATTATCTTACAGAACGAAGTTCTACTGT 881
Query 902 GCGTCATTCTGACCAAGAAGCAATGCATTATGGAGGAAGGCTTGAGTCTGATCCTCACGG 961
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 882 GCGCCATTCTGACCAAGAAGCTATGCACTATGGAGGAAGGCTTGAGTCTGATCCTCACGG 941
Query 962 TTTATCAGTACGCAACACATCTTCTTATGCCAGCCAACATACCCCATCGTTATTAGGAGC 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 TTTATCAGTACGCAACACATCTTCTTATGCCAGCCAACATACCCCATCGTTATTAGGAGC 1001
Query 1022 TGTTCCTCGGCGAAACTTAGATGACTATATTTATCCGGAGAGTTCTTCAAATCCTGGTTA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TGTTCCTCGGCGAAACTTAGATGACTATATTTATCCGGAGAGTTCTTCAAATCCTGGTTA 1061
Query 1082 TGGTGTTAGCTTACCTCCAGGCAGGGATTATGGCACCGGGAAAGGTATCCATAGTGCAGC 1141
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct 1062 TGGTGTTAGCTTACCTCCAGGCAGGGATTATGGCACTGGGAAAGGTATCCATAGTTCTGC 1121
Query 1142 GTCTCTCGACTTGGACTACCCTGGTGGCATGCTGGCTCGTGGTACTGGCGCTGCTCCTCG 1201
||||||||||||||||||||||||||||||||||||||| | | |||||||| ||||||
Sbjct 1122 GTCTCTCGACTTGGACTACCCTGGTGGCATGCTGGCTCGAGCTGGTGGCGCTGGTCCTCG 1181
Query 1202 TGTTGATGATCTCCGGAAAGGTGACCGGGCAAGTTATCTCAGGGAGTTTGATCTAAGAGA 1261
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1182 TGTTGATGATCTCCGGAAAGATGACCGGGCAAGTTATCTCAGGGAGTTTGATCTAAGGGA 1241
Query 1262 AGAAGAGCGTCGTCGTGAGGATCAACGCGCCAGAGATAAGgagcgagaacgagagaggga 1321
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1242 AGAAGAGCGTCGTCGTGAGGATTTACGCGCCAGAGATAAGGAGCGAGAGCGAGAGAGGGA 1301
Query 1322 gcgcgaacatgacagagaacgagagcgtcagagggaacgagaaAGGCAAAGAGCTAGGGA 1381
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1302 GCGCGAACATGATAGAGAACGAGAGCGCCAGAGGGAACGAGAAAGGCAAAGAGCTAGGGA 1361
Query 1382 CCGGGAGAGGGAACGCATATTGGAGAGACGGGAGAAGGAAAGACAAGGAGAAAGAGAACG 1441
|||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1362 CCGGGAAAGGGAACGCATATTGGAGCGACGGGAGAAGGAAAGAGAAGGAGAAAGAGAACG 1421
Query 1442 TGAGCGAAAACGTGCTCTCGAAATAAAACGAGATCGGACTCCAACAGCAAGAGCTACGTC 1501
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1422 TGAGCGAAAACGTGCTCTCGAATTAAACCGAGATCGGACTCCAACAGCAAGAGCTACGTC 1481
Query 1502 CAAGGACACAAAGGAGCGGACTCCAGTGCCCAAATCTATTTCTAGGGATGCACGTAGTTC 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 CAAGGACACAAAGGAGCGGACTCCAGTGCCCAAATCTATTTCTAGGGATGCACGTAGTTC 1541
Query 1562 CTCTTTGCGGCGGGATGCACACCATCGTGAAGCATCAATTAGGCGTTCTTCACCGATTAA 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 CTCTTTGCGGCGGGATGCACACCATCGTGAAGCATCAATTAGGCGTTCTTCACCGATTAA 1601
Query 1622 GCCAATAAGAAGAGATTATGTCTGCAAGGTTTTATCTTCGCGATTGGTTGACATGGAGAG 1681
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 GCCAATAAGGAGAGATTATGTCTGCAAGGTTTTATCTTCGCGATTGGTTGACATGGAGAG 1661
Query 1682 GGATTACGTGACACTAGATAAAAGATATCCCAGGCTTTTTGTGCCTTCTGAGTTCTCGAA 1741
||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1662 GGATTACTTGACATTAGATAAAAGATATCCCAGGCTTTTTGTGCCTTCTGAGTTTTCGAA 1721
Query 1742 GGTTGTTGTGAACTGGCCGAAACAGAAGCTTACACTTTCTATGCATACTGCTGTGAGTTT 1801
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1722 GGTTGTTGTGAACTGGCCGAAACAGAAGCTTACTCTTTCTATGCATACTGCTGTGAGTTT 1781
Query 1802 TGAGCATGATTACATTGAAGATGGTGGAGCTGATGTGAAAAGTACTTCCACTAAGCCTTT 1861
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1782 TGAGCATGATTACATTGAAGATGGTGGAGCTGATGTGAAAAGTACTTCCACAAAGCCTTT 1841
Query 1862 AGCTTTGAAAACTGGAGGAAAAAGTGTTTGGAACGCCAAGATGGTTTTGATGAGCGGGCT 1921
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1842 AGCTTTGAAAACTGGAGGAAAAACTGTTTGGAATGCCAAGATGGTTTTGATGAGCGGGCT 1901
Query 1922 GAGCAGGACTGCTCTGGAAGATCTTGCTTCAGATAAATTCTTTGAGGATCGTATACCTCA 1981
||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||
Sbjct 1902 GAGCAGGACTGCTCTGGAAGATCTTTCTTCAGATAAACTCTTTGAGGACCGTATACCTCA 1961
Query 1982 TATATGCAACATATTAAAATTCGCTGTTCTTAAAAAAGATCATTCATTCATGGCGATTGG 2041
||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1962 TATATGCAACATAATAAAATTCGCTGTTCTTAAAAAAGATCATTCGTACATGGCGATTGG 2021
Query 2042 TGGTTCCTGGGATCCCACAGATGGCATGGACCCATCAGTTGATCAGTCTTCCTTAATTCA 2101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2022 TGGTTCCTGGGATCCCACAGATGGCATGGACCCATCAGTTGATCAGTCTTCCTTAATTCA 2081
Query 2102 GACAATGCTGAGACACTCAAAGGATAAGCTTCATCTTGATCTGAGTAACTGCCGTCACTG 2161
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2082 GACAATGCTGAGACACACAAAGGATAAGCTTCATCTTGATCTGAGTAACTGCCGTCACTG 2141
Query 2162 GAATCCATTCCTAGAGATACATTATGACAGAGTTGGTACAGATGGAGTGTTTAGCTACAA 2221
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 2142 GAATCCATTCCTCGAGATACATTATGACAGAGTTGGTACAGATGGAGTTTTTAGCCACAA 2201
Query 2222 AGAGATCACAGTACTTTTTGTCCCCGATTTATCAGAATGTCTTCCTTCATTTGATGTTTG 2281
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| |||
Sbjct 2202 AGAGATCACCGTACTATTTGTCCCTGATTTATCAGAATGTCTTCCTTCATTTGATACTTG 2261
Query 2282 GAGAACCCAATGGTTGGCACACAGGAAAGCTCTTACTGAAAGAGATCGACTACTCTCTCA 2341
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2262 GAGAACCCAATGGTTGGCACACAGGAAAGCTCTTACTGAGAGAGATCGACTACTCTCTCA 2321
Query 2342 GGAGGTTAAGAAAGATACTGTTGAAGTAACCAAGGATGCAGAGAAAAAGTCACCAGGAGA 2401
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 2322 GGAGGTTAAGAAAGATACTGTTGAAGTAATCAAGGATGCAGAGAAAAAGTCCCCAGGAGA 2381
Query 2402 TACTTCCGGCACTCCGACAACTGGAACTAAGAAGACTGTTAAAAAGATCATTAAAAGAGT 2461
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2382 CACTTCTGGTACTCCGACAACTGGAACTAAGAAGACTGTTAAAAAGATCATTAAAAGAGT 2441
Query 2462 TGTTAAGAGGCCTGTCAACGATGGAAAAGCAACTGGTATGAAAGGTGAGAAGTCGGATGT 2521
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2442 TGTTAAGAGGCCCGTCAACGATGGAAAAGCAACTGGTAAGAAAGGTGAGAAGTCGGA--- 2498
Query 2522 TCCTGAA-CATGTTGCCATACCAGAGACCACAGTCCCAAAAGAAGAGTCCACTGGTACAT 2580
| ||| ||||||||||| ||||||||||| ||||||||||||| |||||||||||||
Sbjct 2499 T-AAGAAGGATGTTGCCATATCAGAGACCACACTCCCAAAAGAAGAATCCACTGGTACAT 2557
Query 2581 CTTCTAACaaaaaaaTAGTGAAAAAGGTAGCTGAAACTGGAGATACCTCAGATCCCAGTG 2640
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 2558 CTTCTAACAAAAAAATAATGAAAAAGGTAGTTGAAACTGGAGATACCTCAGATCCCAGTG 2617
Query 2641 CTAAGGCTAATGAGCAGACTCCTGCAAAGACAATTGTAAAGaaaaaaaTTATTAAAAGGG 2700
||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2618 CTAAGGCTAATGATCTGACTCCTTCAAAGACAATTGTAAAGAAAAAAATTATTAAAAGGG 2677
Query 2701 TGGCTAAAAGGAAGGTTGCTGAAATAGACAACAAAATGGACGGTGACTCCAAGAAAGACG 2760
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
Sbjct 2678 TGGCTAAAAGGAAGGTTGCTGAAATAGACAATAAAATGGACGTTGACTCCAAGAAAGATG 2737
Query 2761 GAGATAGTGATGAGAAAAAGGTGA-TGGAGGTAGGCAAGAAATCCTCTGATTCAGGTAGT 2819
||||||||| |||||||||||| | |||||| |||||||||| || ||||||||||||||
Sbjct 2738 GAGATAGTGTTGAGAAAAAGGT-AGTGGAGGCAGGCAAGAAAACCCCTGATTCAGGTAGT 2796
Query 2820 GTGGAGATGAAACCGACGGCCGAATCTTTAGAAGATGTGAAAGACGAGAATGCCTCCAAA 2879
||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2797 ATGGAGATAAAACCGATGGCCGAATCTTTAGAAGATGTGAAAGACAAGAATGCCTCCAAA 2856
Query 2880 ACTGTGGATGTAAAACAGGAA-ACAGGATCTCCGGATACTAAGAAAAAGGAGGGTGCCTC 2938
||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 2857 ACTGTGGATATAAAACA-GAATACAGGATCTCCGGATACTAAGAAAAAGGAGGGTTCCTC 2915
Query 2939 TAGTTCAAGCAAGAAAGACACTAAGACAGGTGAAGACAAGAAGGCTGAAAAGAAAAACAA 2998
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 2916 TAGTTCAAGCAAGAAAGACACTAAAACAGGTGAAGACAAGAAGGTTGAAAAGAAAAACAA 2975
Query 2999 CTCAGAGACT-ATGTCTGAGGGGAAGAAAATTGATAGGAATAATACTGATgagaaagagg 3057
|||||||||| | |||||||||||||||||||||||||||| | | ||| || ||| |||
Sbjct 2976 CTCAGAGACTCA-GTCTGAGGGGAAGAAAATTGATAGGAAT-A-A-TGA-GA-AAA-AGG 3028
Query 3058 taaaagaaaaggttaccgagaaagagataaaagagagaggtggaaaagaTGAGTCCAGGA 3117
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3029 TAAAAGAAAAAATTACCGAGAAAGAGATAAAAGAGAGAGGTGGAAAAGATGAGTCCAGGA 3088
Query 3118 TTCAAGTGAAGGACAGGAAAAAGTGTGAGGAACCTCCTCGCGCTGGATTTATTCTACAGA 3177
| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 3089 TACAAGTGAAGGACAGGAAAAAGTGTGAGGAACCTCCTCGTGCCGGATTTATTCTACAGA 3148
Query 3178 CAAAACGGAACAAAGACTCCAAATTGCGTTCACTTTCGGCCTCTTTGGATTCGCTCTTGG 3237
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3149 CGAAACGGAACAAAGACTCCAAATTGCGTTCACTTTCGGCCTCTTTGGATTCACTCTTGG 3208
Query 3238 ATTACACTGACAAGGACCTTGATGAGTCATCATTTGAGATTTCATTGTTTGCGGAATCGC 3297
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3209 ATTACACTGACAAGGACCTTGATGAGTCATCATTTGAGCTTTCATTGTTTGCGGAATCGC 3268
Query 3298 TATATGAGATGCTGCAGTATCAAATGGG-TTCCCGTATCTTTGAATTT-C-TCAAAAAAC 3354
|||||||||||||||||||||||||||| ||||| | | ||| ||| | |||| ||||
Sbjct 3269 TATATGAGATGCTGCAGTATCAAATGGGTTTCCC-T-T-TTTCTGTTTCCTTCAAGAAAC 3325
Query 3355 TACGTGTAAAAATTGTGAGGCAAAGAAATCAACGGAAGAGGCATCAGGAGGAGTTGTCTG 3414
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3326 TACGGGTAAAATTTGTGAGGCAAAGAAATCAACGGAAGAGGCATCAGGAGGAGTTGTCTG 3385
Query 3415 TCAAGCAAAACGAAGCAAAATCCCAAGATAAGCGTCAAAAGACAGCTGAACATGAAGACA 3474
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 3386 TCAAGCAAAACGAAGCAAAATCCCAAAATAAGCGTCAAAAGACAGCTGAACATAAAGACA 3445
Query 3475 AGGAAGCCTCGGTGATAAGCGAATCTGCTCCTGGGAAGGATGATAAAGAAACTTCAGGCA 3534
||||| |||| || |||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 3446 AGGAAACCTCCGTTATAACCGAATCTGCTCCTGGGAAGGATGATAAAGAAAATTCAGGCA 3505
Query 3535 AGGAAACCGTGGACGGTAGCCGGGAAATTGCAGATAAGGAAGCTGTAGCAAAGACCAAAG 3594
|||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 3506 AGGAAACCGTAGACGGTAGCCAGGAAATTGCAGATAAGGAAGCTGTAGCAAACACCAAAG 3565
Query 3595 AAACTTTGGGCAGTAAAGAAGTTACTGTGGGTGAAGCTGTTAATATGGAAGTGGAGAATC 3654
||| |||| |||||||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct 3566 AAATTTTGAGCAGTAAAGAAGTTACTGTGGGTGAAGCTGCTAATAGGGAAGTGGATAATC 3625
Query 3655 AGGATGAGGAGGATGACGATGGTGATGACGACCCagaggaagatcctgaggaggatcctg 3714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3626 AGGATGAGGAGGATGACGATGGTGATGACGACCCAGAGGAAGATCCTGAGGAGGATCCTG 3685
Query 3715 aagaagaccctgaagaagatccggaagaagatccagaagaaTGCGAGGAAATGGACGTTG 3774
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 3686 AAGAGGACCCTGAAGAAGACCCTGAAGAAGATCCAGAAGAATGCGAGGAAATGGACGTTG 3745
Query 3775 CAAATACTGAGCAAGAAGAGCCTGCTGAAGAGCCGCAGAAGAAAGAAGAAAACCTTGAGA 3834
||||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct 3746 CAAATTCTGAGCAAGAAGACCCTGCGGAAGAGGCGCAGAAGAAAGAAGAAAACCTTGAGA 3805
Query 3835 AAACTAGTGGCACTGTTGCTGATCCTATAACTGAAGCCGA-AACTGATAATAGAAAAGAA 3893
| ||||||||||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 3806 AGACTAGTGGCACTGTTGCTGATTCTATAACTGAAG-TTACAACTGATAATAGAAAAGAA 3864
Query 3894 GAAAGAGGTCCTAACGACTCAAAAACTGAAATCAAACCCAAGTCGGAAACGGAAAAGCAC 3953
|||| ||||| || ||| ||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 3865 GAAAAAGGTCGTATTGACCCAAAAACCGAAATCAAACCCAAGTCTGAAACGGATAAGCAC 3924
Query 3954 GGGAAACAAGATGGAGGAACATCTGATGCAGCAAAACGAGAAGAAACAGTTGATAAAGAG 4013
||||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||||||
Sbjct 3925 GGGAAACAAGAGGGAGGAACGTCTGATGCACCAAAACGAGAGGAAACAGTTGATAAAGAG 3984
Query 4014 CTGTTGCAGGCTTTCAGATTTTTTGACCGTAACCAGGCAGGCTATGTTAGGGTTGAAGAT 4073
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3985 CTGTTACAGGCTTTCAGGTTTTTTGACCGTAACCAGGCAGGCTATGTTAGGGTTGAAGAT 4044
Query 4074 ATGAGAGTAACCATTCACAGCTTGGGAAAGTTTCTATCTCACCGTGAAGTCAAGGAACTT 4133
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 4045 ATGAGAGTAACCATTCACAGCTTGGGGAAGTTTCTATCTCACCGTGAAGTCAAGGAACTT 4104
Query 4134 GTGCAGAGCGCTTTGTTAGAGAGCAACACTGGAAGAGATGATCGAATTTTATACAATAAA 4193
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4105 GTGCAGAGCGCATTGTTAGAGAGCAACACTGGAAGAGATGATCGAATTTTATACAATAAA 4164
Query 4194 CTTGTTAGATTGTCTCTATAGAAAACAAA-ATACTTCTAATAATGTTCTCGTCTTCTGTC 4252
||||||||||||||||||||||||| ||| ||||||||||||||| | || || | ||||
Sbjct 4165 CTTGTTAGATTGTCTCTATAGAAAA-AAATATACTTCTAATAATG-T-TC-TC-T-TGTC 4218
Query 4253 TTTGGAACTTCCTGAGACATTGTTTGTTTCCTCAGTAGTTTAATTTTCGACTGTTTTGAA 4312
||| ||| || ||| ||||| | || | ||||||||||||||||
Sbjct 4219 TTT---TCTT-CT------TTG-GAACTTCCT--G-AG----A-TTTCGACTGTTTTGAA 4259
Query 4313 T-CAACAACAAATTCCTATTGTTTTCATTGATAATAAC-AATGGATTCACGATCGAGGAA 4370
| || |||||||||||||||| ||||||| ||||| || | |||| ||||| ||||||||
Sbjct 4260 TCCAGCAACAAATTCCTATTGCTTTCATTAATAAT-ACTATTGGAGTCACGCTCGAGGAA 4318
Query 4371 CTTGTACAATAACCAGTAATC 4391
|||||||||||||||||||||
Sbjct 4319 CTTGTACAATAACCAGTAATC 4339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166349651583
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5