BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03160.1
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936100 jgi|Araly1|936100|scaffold_500291.1 551 2e-156
> Ahg936100 jgi|Araly1|936100|scaffold_500291.1
Length=640
Score = 551 bits (298), Expect = 2e-156
Identities = 512/613 (84%), Gaps = 23/613 (4%)
Strand=Plus/Plus
Query 1 ATGTCTTCGAAAAAGATTGTGTTGACAAGCTCCGATGGTGAATCTTTCAAGGTTGAAGAA 60
||||||||||| | |||||||||||| ||||||||||| || |||||| |||||||||||
Sbjct 21 ATGTCTTCGAACATGATTGTGTTGACTAGCTCCGATGGCGAGTCTTTCCAGGTTGAAGAA 80
Query 61 GTGGTGGCAAGAAAACTGCAGATCGTAGGACACATTATCGAAGACGACTGTGCTACAAAC 120
||||| |||||||| |||||||||||||||||||| ||||||||||||||| || |||
Sbjct 81 GTGGTTGCAAGAAAGCTGCAGATCGTAGGACACATGCTCGAAGACGACTGTGTTATTAAC 140
Query 121 AAAATCCCTATTCCAAACGTTACCGGAGAGATTCTCGCCAAGGTTATCGAGTACTGCAAG 180
||||||| ||| ||||||||||||| ||| |||| ||| |||| ||||||| ||||||
Sbjct 141 GCAATCCCTCTTCAAAACGTTACCGGAAAGACTCTCTCCATGGTTCTCGAGTATTGCAAG 200
Query 181 AAACACGTTGAAGACGATGAT-GACG-TGGTGGA-GAC--GCATGAATCATCGACGAAAG 235
||||||| | ||||||| | | || || | || | | || ||||||| | | | |||
Sbjct 201 AAACACG-T--CGACGATG-TGGTCGCTGAT-GATGTCGTGCCTGAATCAAC-A-G-AAG 252
Query 236 GAGATAAAACAGT-TGAGGAGGCGAAGAAGAA-GCCTGATGATGTGGCCGTACCTGAATC 293
||||| || | ||||||| |||||||||| | | |||||||||| || ||| ||||
Sbjct 253 GAGATGGTGCA-TCTGAGGAGCCGAAGAAGAAGGTC-GATGATGTGGTGGTGCCTAAATC 310
Query 294 AACTGAAGGAGATGATGAAGCTGAGGATAAGAAGGAGAAGCTTAATGAGTGGGATGCAAA 353
| | |||| |||||||| | ||||||| |||| ||||||| ||| ||||| |||||
Sbjct 311 ATCAGAAGAAGATGATGCATCTGAGGAGGCGAAGAAGAAGCTCGATGCTTGGGACGCAAA 370
Query 354 GTTCATGAAGGATTTCGATATTAAGACGATCTTCGA-CATTATTCTGGCTGCTAACTATC 412
||||||||||||| || ||| | ||||||||||| | ||| ||||| |||||||||||||
Sbjct 371 GTTCATGAAGGATCTCAATACTGAGACGATCTTC-AGCATCATTCTCGCTGCTAACTATC 429
Query 413 TCAACGTCCAAGGTCTTTTTGATCTCTGTAGCAAGACCATTGCAGATTACATAAAAGATA 472
|||||||| ||||||| |||||||| |||| ||||| ||||||||||||| |||||||
Sbjct 430 TCAACGTCAAAGGTCTACTTGATCTCACTAGCCAGACCGTTGCAGATTACATCAAAGATA 489
Query 473 TGACGCCAGAGGAAGTTCGAGAACTCTTTAACATCGAGAATGATTTCACACCTGAAGAAG 532
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 490 TGACGCCAGAGGAAGTTCGAGAACTCTTTAACATCGAGAATGATTTCACGCCTGAAGAAG 549
Query 533 AAGAAGCA-ATTCGCAATGAAAACGCTTGGACTTTTGAG-CAAGATGGAAAACAACAAGT 590
| |||| | |||||||| || |||||||||||||||||| | | | | |||| ||||
Sbjct 550 AGGAAG-AGATTCGCAAGGAGAACGCTTGGACTTTTGAGGCT-GCTTCAGCACAAGAAGT 607
Query 591 TCCAAAACCCTAG 603
|||||||||||||
Sbjct 608 TCCAAAACCCTAG 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22092086031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5