BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G03170.1

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936101 jgi|Araly1|936101|scaffold_500292.1                        414    2e-115


> Ahg936101 jgi|Araly1|936101|scaffold_500292.1
Length=529

 Score =  414 bits (224),  Expect = 2e-115
 Identities = 389/465 (84%), Gaps = 26/465 (6%)
 Strand=Plus/Plus

Query  1    ATGTCTTCCAACAAGATTGTTTTGTCTAGCTCCGATGGCGAATCTTTCGAGGTTGAAGAA  60
            |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  21   ATGTCTTCAAACAAGATTGTTTTGACTAGCTCCGATGGCGAATCTTTCGAGGTTGAAGAA  80

Query  61   GCGGTGGCAAGAAAACTGAAAATCGT-GGAACACATGATTGAAGACGACTGTGTTGTTAC  119
            | ||| |||||||||||  | ||||| ||| |||||| | ||||||||||||||| ||| 
Sbjct  81   GTGGTAGCAAGAAAACTTCAGATCGTAGGA-CACATGCTCGAAGACGACTGTGTTATTAA  139

Query  120  CGAGGTCCCTCTTCAAAACGTCACCGGAAAGATCCTCTCCATTGTTGTCGAGTATTGCAA  179
            |||  |||||||||||||||| |||||| | ||||||||||| ||| |||||||||||||
Sbjct  140  CGAAATCCCTCTTCAAAACGTTACCGGAGATATCCTCTCCATGGTTATCGAGTATTGCAA  199

Query  180  GAA-ACACGTCGTTGACGAAGAAAGCGACGA-G-T----------TCAAGACTTGGGACG  226
             || ||||||||  || ||||||||||| || | |          |||||||||||||||
Sbjct  200  -AACACACGTCGACGAAGAAGAAAGCGAGGAAGCTCAGACGAAGCTCAAGACTTGGGACG  258

Query  227  AAGAGTTCATGAAGAAATTTGATCAGCCTA-CGGTCTTCCAACTC-TTGCTCGCTGCTAA  284
            ||||||||||||||||||||||| | |  | |  |||| ||| || || |||||||||||
Sbjct  259  AAGAGTTCATGAAGAAATTTGAT-ATCAAAACACTCTTACAAATCATT-CTCGCTGCTAA  316

Query  285  CTATCTCAATATCAAAGGCCTTCTTGATCTC-TCTGCTCAAACCGTTGCAGAT-CGCATC  342
            |||||||||| | |||||||||||||||||| | | |||| ||  |||||||| | ||||
Sbjct  317  CTATCTCAATGTTAAAGGCCTTCTTGATCTCGTTT-CTCAGACAATTGCAGATAC-CATC  374

Query  343  AAAGATAAGACTCCAGAGGAAATTCGAGAAATCTTCA-ACATCGAGAACGATTTCACACC  401
            |||||| | || |||||  ||||||||||| |||||  |  |||||||||||| |||   
Sbjct  375  AAAGATTACACGCCAGAACAAATTCGAGAAGTCTTCGGAG-TCGAGAACGATTACACTGA  433

Query  402  CGAAGAAGAAGCAGCGGTTCGCAAGGAAAACGCATGGGCTTTTGA  446
             || |||||||||| ||||||||||||||||||||||||||||||
Sbjct  434  GGAGGAAGAAGCAGAGGTTCGCAAGGAAAACGCATGGGCTTTTGA  478



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16254280914


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5