BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03190.1
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484224 jgi|Araly1|484224|fgenesh2_kg.5__216__AT2G03190.1 610 4e-174
Ahg931362 jgi|Araly1|931362|scaffold_303819.1 276 2e-73
Ahg936100 jgi|Araly1|936100|scaffold_500291.1 241 6e-63
> Ahg484224 jgi|Araly1|484224|fgenesh2_kg.5__216__AT2G03190.1
Length=507
Score = 610 bits (330), Expect = 4e-174
Identities = 456/516 (88%), Gaps = 12/516 (2%)
Strand=Plus/Plus
Query 19 ATGTCTTCGAACAAGATTGTGTTGACTAGCTCGGATGATGAATCGTTCGAGGTTGAGGAA 78
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1 ATGTCTTCGAACAAGATTGTGTTGACTAGCTCCGATGATGAATCTTTCGAGGTTGACGAA 60
Query 79 GCGGTGGCTCGTAAATTGAAGGTCATAGCACACATGATCGATGACGACTGCGCCGATAAA 138
||||||||||||||| || || ||||||| |||||||| |||||||||||||||||||||
Sbjct 61 GCGGTGGCTCGTAAACTGCAGATCATAGCGCACATGATTGATGACGACTGCGCCGATAAA 120
Query 139 GCAATCCCGCTTGAAAACGTCACCGGAAATATCCTCGCTTTGGTTATCGAGTATTGCAAG 198
|||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||
Sbjct 121 GCAATCCCGCTTCAAAACGTCACTGGAAAGATCCTCGCTGTGGTTATCGAGTATTGCAAG 180
Query 199 AAACACGTACTTGATGATGTTGATGATAGTGATGATTCTACTGAAGCAACAAGCGAAAAT 258
|||||||| | ||||||||||||||||||||| || | ||||| || ||||||||||
Sbjct 181 AAACACGT--TA-ATGATGTTGATGATAGTGATG-TTGT--TGAAGAAATAAGCGAAAAT 234
Query 259 GTAAACGAGGAAGCCAAGAACGAGCTCAG-GACTTGGGACGCAGAGTTCATGAAAGA-AT 316
||| |||||||||||||||| |||||| | ||||||||||||||||||||||||||| ||
Sbjct 235 GTAGACGAGGAAGCCAAGAAAGAGCTC-GTGACTTGGGACGCAGAGTTCATGAAAGATAT 293
Query 317 TTGATATGGAAACAGTCATGAAACTCATTCTCGCTGTTAATTATCTCAACGTCCAA-GAT 375
| |||||||||||| | | ||||| ||||||||| ||| |||||||||||| || | |
Sbjct 294 T-GATATGGAAACAATGTTCCAACTCCTTCTCGCTGCTAACTATCTCAACGTCAAAAG-T 351
Query 376 CTTCTTGGTCTCACTTGCCAGACCGTTGCAGATCACATGAAAGATATGTCGCCAGAGGAA 435
||||||| ||||||| |||||||| |||||||| |||| ||||||| | ||||| |||||
Sbjct 352 CTTCTTGATCTCACTAGCCAGACCATTGCAGATTACATCAAAGATAAGACGCCACAGGAA 411
Query 436 GTTCGAGAACTCTTTAACATTGAGAATGATTACACACCTGAAGAAGAAGACGCGATTCGT 495
||||||||| |||||||||| ||||| |||| ||| ||||||||||| || | ||||||
Sbjct 412 GTTCGAGAAATCTTTAACATCGAGAACGATTTCACGCCTGAAGAAGAGGAAGAGATTCGC 471
Query 496 AAGGAAAACGCTTGGGCTTTTGAGGATCTAAAGTAA 531
||||| |||| |||||||||||||||||||| |||
Sbjct 472 AAGGAGAACGAATGGGCTTTTGAGGATCTAAATTAA 507
> Ahg931362 jgi|Araly1|931362|scaffold_303819.1
Length=512
Score = 276 bits (149), Expect = 2e-73
Identities = 195/217 (90%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 6 AACAAAACAAACAATGTCTTCGAACAAGATTGTGTTGACTAGCTCGGATGATGAATCGTT 65
||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 10 AACAAAAGAAA-TATGTCTTCGAACAAGATTGTGTTGACTAGCTCCGATGATGAATCTTT 68
Query 66 CGAGGTTGAGGAAGCGGTGGCTCGTAAATTGAAGGTCATAGCACACATGATCGATGACGA 125
||||||||| ||||||||||||||||||| | || ||||||| |||||||||||||| ||
Sbjct 69 CGAGGTTGACGAAGCGGTGGCTCGTAAATCGCAGATCATAGCGCACATGATCGATGAAGA 128
Query 126 CTGCGCCGATAAAGCAATCCCGCTTGAAAACGTCACCGGAAATATCCTCGCTTTGGTTAT 185
||||||||||||||||||| |||| |||||||||| ||||| ||||||||| | ||||
Sbjct 129 TTGCGCCGATAAAGCAATCCTGCTTCAAAACGTCACTGGAAAGATCCTCGCTATCATTAT 188
Query 186 CGAGTATTGCAAGAAACACGTACTTGATGATGTTGAT 222
||||||||||||||||||||| | ||||||||||||
Sbjct 189 CGAGTATTGCAAGAAACACGT--T-GATGATGTTGAT 222
> Ahg936100 jgi|Araly1|936100|scaffold_500291.1
Length=640
Score = 241 bits (130), Expect = 6e-63
Identities = 220/262 (84%), Gaps = 12/262 (5%)
Strand=Plus/Plus
Query 265 GAGGAAGCCAAGAACG-AGCTC-AGGACTTGGGACGCAGAGTTCATGAAAGAAT-TTGAT 321
||||| || ||||| | ||||| | | ||||||||||| |||||||| ||| || | ||
Sbjct 333 GAGGAGGCGAAGAA-GAAGCTCGATG-CTTGGGACGCAAAGTTCATG-AAGGATCTCAAT 389
Query 322 A-TGGAAACAG-TCATGAAAC-TCATTCTCGCTGTTAATTATCTCAACGTCCAAGATCTT 378
| | || || | || | | | |||||||||||| ||| |||||||||||| ||| |||
Sbjct 390 ACT-GAGAC-GATC-TTCAGCATCATTCTCGCTGCTAACTATCTCAACGTCAAAGGTCTA 446
Query 379 CTTGGTCTCACTTGCCAGACCGTTGCAGATCACATGAAAGATATGTCGCCAGAGGAAGTT 438
|||| ||||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct 447 CTTGATCTCACTAGCCAGACCGTTGCAGATTACATCAAAGATATGACGCCAGAGGAAGTT 506
Query 439 CGAGAACTCTTTAACATTGAGAATGATTACACACCTGAAGAAGAAGACGCGATTCGTAAG 498
||||||||||||||||| |||||||||| ||| ||||||||||| || | |||||| |||
Sbjct 507 CGAGAACTCTTTAACATCGAGAATGATTTCACGCCTGAAGAAGAGGAAGAGATTCGCAAG 566
Query 499 GAAAACGCTTGGGCTTTTGAGG 520
|| ||||||||| |||||||||
Sbjct 567 GAGAACGCTTGGACTTTTGAGG 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25275493971
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5