BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03200.1
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936103 jgi|Araly1|936103|scaffold_500294.1 2239 0.0
Ahg932663 jgi|Araly1|932663|scaffold_400651.1 359 4e-98
Ahg914024 jgi|Araly1|914024|Al_scaffold_0001_4278 211 1e-53
Ahg336145 jgi|Araly1|336145|fgenesh1_pg.C_scaffold_1002710 132 9e-30
> Ahg936103 jgi|Araly1|936103|scaffold_500294.1
Length=1432
Score = 2239 bits (1212), Expect = 0.0
Identities = 1361/1433 (95%), Gaps = 10/1433 (1%)
Strand=Plus/Plus
Query 8 CACTcacacacacacaAACCATGGcttcttcttcttctt-c--ttctttattatttcctt 64
||| |||||||||||||| ||||||||||||||||||| | |||||||||||||||||
Sbjct 5 CACACACACACACACAAA-AATGGCTTCTTCTTCTTCTTCCTTTTCTTTATTATTTCCTT 63
Query 65 tctttcttattcttttttcATG-TTTAATCTCGGTTTCATCGTCAAGAAGATCATTAATC 123
|||||||||||||||||||||| ||| ||| | |||||||| ||||||||||||||||||
Sbjct 64 TCTTTCTTATTCTTTTTTCATGCTTT-ATCGCAGTTTCATCATCAAGAAGATCATTAATC 122
Query 124 GACCGTACTCTTCCGAAAAACCTTCCGAGATCCGGTTTTCGATTGAGTCTTCGACATGTG 183
|||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 123 GACCGTCCTCTTCCAAAAAACCTTCCAAGATCCGGTTTTCGATTAAGTCTTCGACATGTG 182
Query 184 GATTCCGGTAAAAACCTCACCAAGATCCAAAAGATTCAGAGAGGGATTAACCGTGGATTC 243
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 183 GATTCCGGTAAAAACCTCACCAAGATCCAAAAGATTCAAAGAGGGATTAACCGTGGATTC 242
Query 244 CATAGATTAAACAGATTAGGAGCTGTAGCTGTTTTAGCTGTAGCCTCTAAGCCTGATGAT 303
|||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 243 CATAGATTAAACAGGTTAGGAGCTGTAGCTGTTTTGGCTGTAGCTTCTAATCCTGATGAT 302
Query 304 ACTAATAACATTAAAGCACCTACTCATGGAGGAAGCGGTGAGTTTCTTATGGAGTTGTCT 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 303 ACTAATAACATTAAAGCACCTACTCATGGAGGAAGCGGTGAGTTTCTTATGGAGTTATCT 362
Query 364 ATTGGAAACCCGGCGGTTAAATACTCTGCTATTGTTGATACCGGAAGTGACCTTATTTGG 423
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 363 ATTGGAAACCCGGCGGTTAAATACGCAGCTATTGTTGATACCGGAAGTGACCTTATATGG 422
Query 424 ACTCAATGCAAGCCTTGCACTGAATGTTTTGATCAACCAACTCCGATTTTTGACCCGGAG 483
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 423 ACTCAATGCAAGCCTTGTACTGAATGTTTTGATCAACCAACTCCGATTTTCGACCCCGAG 482
Query 484 AAATCTTCCTCTTACTCGAAAGTAGGATGCTCTTCTGGTCTTTGTAACGCATTGCCTCGA 543
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 483 AAATCTTCCTCTTACTCGAAAGTAGGATGTTCTTCTGGTCTTTGTAATGCATTGCCTCGA 542
Query 544 TCAAACTGTAACGAAGATAAAGATGCTTGTGAGTATTTGTATACTTATGGAGATTACTCA 603
|||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 543 TCAAACTGCAACGAAGACAAAGATTCTTGTGAGTATTTGTATACTTATGGAGATTACTCA 602
Query 604 TCTACAAGAGGGCTCTTGGCCACGGAAACGTTCACTTTCGAGGACGAGAACTCGATTTCT 663
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 603 TCCACAAGAGGGCTCTTGGCCACAGAAACCTTCACTTTCGAGGACGAGAACTCGATTTCT 662
Query 664 GGTATCGGGTTTGGGTGTGGGGTTGAGAACGAAGGCGACGGGTTCTCTCAAGGGTCAGGT 723
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 663 GGTATAGGGTTTGGGTGTGGGGTTGAGAACGAAGGAGATGGGTTCTCTCAAGGGTCAGGT 722
Query 724 CTTGTAGGTCTTGGTCGCGGACCGCTCTCGCTTATTTCTCAGCTCAAAGAGACTAAGTTT 783
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 723 CTTGTAGGTCTTGGTCGCGGATCGCTCTCGCTTATTTCTCAGCTCAAAGAGACTAAATTC 782
Query 784 TCTTATTGCTTGACCTCGATTGAGGATAGTGAAGCATCTAGCTCGTTGTTTATTGGATCT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TCTTATTGCTTGACCTCGATTGAGGATAGTGAAGCATCTAGCTCGTTGTTTATTGGATCT 842
Query 844 TTAGCCTCGGGTATCGTCAACAAAACAGGTGCAAGTTTAGATGGTGAAGTCACCAAAACG 903
|||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct 843 TTAGCCTCGGGTATCGTCAACAAAACCGGTGCAAATTTAGATGGTGAAGTTACCAAAACT 902
Query 904 ATGTCTTTGCTACGAAATCCAGATCAGCCTTCGTTCTATTACCTTGAGTTACAAGGCATC 963
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 ATGTCGTTGCTACGAAATCCAGATCAGCCTTCGTTCTATTACCTTGAGTTACAAGGCATC 962
Query 964 ACCGTTGGAGCAAAACGCCTTTCTGTTGAAAAGTCTACTTTTGAACTAGCCGAAGATGGA 1023
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 963 ACCGTTGGAGCAAAACGCCTTTCTGTTGAAAAGTCTACTTTTGAACTATCCGAAGATGGA 1022
Query 1024 ACCGGAGGTATGATCATAGACTCAGGCACGACCATCACGTATCTCGAGGAGACCGCGTTT 1083
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1023 ACCGGAGGCATGATCATAGACTCGGGCACGACTATCACGTATCTCGAGGAGACCGCGTTT 1082
Query 1084 AAAGTGTTGAAAG-AGGAGTTTACTTCTCGGATGAGTTTACCAGTAGATGACTCTGGATC 1142
|| ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1083 AAGGTGTT-AAAGGAGGAGTTTACTTCTCGGATGAGTTTACCAGTCGATGACTCTGGATC 1141
Query 1143 CACGGGACTTGACTTGTGCTTCAAGTTACCTGATGCTGCCAAGAATATTGCTGTTCCTAA 1202
|||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct 1142 AACGGGACTTGACTTGTGCTTCAAGTTACCTAATGCAGACAAGAATATTGCTGTTCCTAA 1201
Query 1203 GATGATTTTTCATTTTAAAGGTGCTGATTTGGAGCTTCCCGGAGAGAACTACATGGTGGC 1262
| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1202 GTTGATTTTTCATTTTAAAGGTGCGGATTTGGAGCTTCCCGGAGAGAATTACATGGTGGC 1261
Query 1263 GGATTCAAGCACCGGCGTTTTGTGTTTGGCCATGGGAAGTTCTAATGGGATGTCTATTTT 1322
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1262 GGATTCAAGCACTGGCGTTTTGTGCTTGGCCATGGGAAGTTCTAATGGGATGTCTATTTT 1321
Query 1323 CGGAAATGTTCAACAGCAGAATTTTAATGTACTTCATGATCTTGAGAAAGAAACGGTGTC 1382
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1322 TGGAAATGTTCAGCAGCAAAATTTTAATGTACTTCATGATCTTGAGAAAGAAACAGTGAC 1381
Query 1383 GTTTGTTCCCACTGAATGTGGAAAATTGTAGATTTTTAATTTGtttttttttt 1435
||||||||||||||||||||||||||||||||||| |||| ||||||| |||
Sbjct 1382 ATTTGTTCCCACTGAATGTGGAAAATTGTAGATTTT-AATT-GTTTTTTCTTT 1432
> Ahg932663 jgi|Araly1|932663|scaffold_400651.1
Length=504
Score = 359 bits (194), Expect = 4e-98
Identities = 272/309 (88%), Gaps = 8/309 (3%)
Strand=Plus/Plus
Query 1129 GATGACTCTGGATCCACGGGACTTGACTTGTGCTTCAAGTTACCTGATGCTGCCAAGAAT 1188
||||||| | ||| ||| ||||||||||||||||||||||||| |||| | |||||||
Sbjct 200 GATGACTATAGATTGACGAAACTTGACTTGTGCTTCAAGTTACCTAATGCAGTCAAGAAT 259
Query 1189 ATTGCTGTTCCTAAGATGATTTTTCATTTTAAAGGTGCT-GATTTGGAGCTTCCCGGAGA 1247
|||| |||||||||||||| |||||||||||||||| | |||||||||||| | ||| |
Sbjct 260 ATTGATGTTCCTAAGATGA-TTTTCATTTTAAAGGT-TTGGATTTGGAGCTTTCAGGAAA 317
Query 1248 GAACTACATGGTGGCGGATTCAAGCACCGGCGTTTT-GTGTTTGGCCATGGGAAGTTCTA 1306
|| |||||||||| |||||||| |||||||||||| || ||| |||||||||||||||
Sbjct 318 AAATTACATGGTGGTGGATTCAATCACCGGCGTTTTGGTTTTTTGCCATGGGAAGTTCT- 376
Query 1307 AT-GGGATGTCTATTTTCGGAAATGTTCAACAGCAGAATTTTAATGTACTTCATGATCTT 1365
|| ||||||||| |||| | ||||||||| |||| |||||||||||||||||||||||||
Sbjct 377 ATCGGGATGTCTGTTTTTGAAAATGTTCAGCAGCTGAATTTTAATGTACTTCATGATCTT 436
Query 1366 GAGAAAGAAACGGTGTCGTTTGTTCCCACTGAATGTGGAAAATTGTAGATTTTTAATTTG 1425
||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||| |
Sbjct 437 GAGAAAGAAACGGTGTCATGTGTTCCCACTAAATGTGGAAAATTGTAGATTTT-AATT-G 494
Query 1426 ttttttttt 1434
||| |||||
Sbjct 495 TTTGTTTTT 503
> Ahg914024 jgi|Araly1|914024|Al_scaffold_0001_4278
Length=564
Score = 211 bits (114), Expect = 1e-53
Identities = 189/224 (84%), Gaps = 10/224 (4%)
Strand=Plus/Plus
Query 1197 TCCTAAGATGATTTTTCATTTTAAAGGTGCTGATTTGGAGCTTCCCGGAGAGAACTACAT 1256
||| ||| ||| ||||||||||| |||||| |||||||||||||||||| | || | |||
Sbjct 347 TCC-AAGTTGA-TTTTCATTTTAGAGGTGCGGATTTGGAGCTTCCCGGAAAAAAATTCAT 404
Query 1257 GGTGGCGGATTCAAGCACCGGCGTTTTGTGTTTGGCCATGGGAAGTTCTAATGGGATGTC 1316
||| |||||||||| |||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 405 GGTTGCGGATTCAATCACCAGCGTTTTGTGTTTGGCCATGGGAAGTTCTAACGGAATGTC 464
Query 1317 TATTTTCGGAAATGTTCAACAGCAGAATTTTAATGT-ACTTCAT-GATCTTGAGAAAGAA 1374
| |||| ||||||| ||| || | ||||| ||| | | | || | |||||||||| |
Sbjct 465 TGTTTTTGGAAATGCTCAGCATCTGAATTATAACGGGA-TG-ATCG-TCTTGAGAAA-A- 519
Query 1375 ACGGTGTCGTTTGTTCCCACTGAATGTGGAAAATTGTAGATTTT 1418
||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 520 -CGGTGTCATGTGTTCCCACTAAATGTGGAAAATTGTAGATTTT 562
> Ahg336145 jgi|Araly1|336145|fgenesh1_pg.C_scaffold_1002710
Length=966
Score = 132 bits (71), Expect = 9e-30
Identities = 79/83 (95%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 1294 ATGGGAAGTTCTAATGGGATGTCTATTTTCGGAAATGTTCAACAGCAGAATTTTAATGTA 1353
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 ATGGGAAGTTCTAATGGGATGTCTATTTTCGGAAATGTTGAGCAGCAGAATTTTAATGTA 60
Query 1354 CTTCATGATCTTGAGAAAGAAAC 1376
|||||||||| | ||||||||||
Sbjct 61 CTTCATGATCCTAAGAAAGAAAC 83
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54926133290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5