BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03210.1
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484226 jgi|Araly1|484226|fgenesh2_kg.5__218__AT2G03210.1 2420 0.0
> Ahg484226 jgi|Araly1|484226|fgenesh2_kg.5__218__AT2G03210.1
Length=1620
Score = 2420 bits (1310), Expect = 0.0
Identities = 1524/1627 (94%), Gaps = 16/1627 (1%)
Strand=Plus/Plus
Query 1 ATGAGAATCACAGAGATCTTAGCTTTGTTCATGGTTTTAGTCCCTGTCTCGCTAGTAATC 60
|||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||
Sbjct 1 ATGAGAATCACAGAGATCTTAGCTTTTTTCATGGTTTTAATCCCTGTCTTACTAGTAATC 60
Query 61 GTAGCCATGTTTGGATATGATCAAGGAAATGGCTTTGTACAAGCATCTAGATTCATAAC- 119
|||||||||||||||||||||||||||||||| |||||| | ||||| ||| |||| ||
Sbjct 61 GTAGCCATGTTTGGATATGATCAAGGAAATGGTTTTGTAGAGGCATCAAGAATCAT-ACG 119
Query 120 AAT------GGAACCAAATGTGACATCCTCATCAGATGATTCATCACTAGTGCAGAGAGA 173
||| ||||||||| ||||||| | | |||||||||||| || | ||||||||||
Sbjct 120 AATGGAACCGGAACCAAACGTGACAT-C-C-TCAGATGATTCAGCA-T--TGCAGAGAGA 173
Query 174 TCAAGAACAAAAAGATTCTGTAGATATGTCTCTGCTTGGAGGGCTACTTGTATCTGGTTT 233
||| ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||
Sbjct 174 TCAGGAACAAAAAGATTCTGTAGATTTGTCTCTGCTTGGAGGACTACTTGTTTCTGGTTT 233
Query 234 CAAGAAAGAGTCTTGCTTGAGTAGATACCAATCTTACCTCTACCGTAAAGCTTCACCGTA 293
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 234 CAAAAAAGAGTCTTGCTTGAGTAGATACCAATCTTACCTCTATCGTAAAGCTTCACCGTA 293
Query 294 TAAACCTTCGTTGCATCTACTTTCGAAGCTTAGAGCTTACGAAGAGCTTCATAAAAGATG 353
|| |||||| || |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 294 TAGACCTTCTTTACATCTACTTTCGAAGCTTAGAGCTTACGAAGAGCTTCATAAACGATG 353
Query 354 TGGACCGGGAACAAGACAGTATACCAATGCAGAAAGATTGCTTAAACAGAAACAAACAGG 413
|||||||||||| |||| ||||||||||||||| ||| ||||||||| ||||||||| ||
Sbjct 354 TGGACCGGGAACGAGACCGTATACCAATGCAGAGAGACTGCTTAAACCGAAACAAACTGG 413
Query 414 TGAGAT-GGAATCACAAGGATGCAAGTATGTTGTTTGGATGTCGTTTAGCGGATTAGGAA 472
||| | ||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGA-TTCAGAACCAGAAGGATGCAAGTATGTTGTTTGGATGTCGTTTAGCGGATTAGGAA 472
Query 473 ACAGGATTATCAGTATTGCTTCTGTGTTTCTGTATGCAATGTTGACAGATAGAGTCTTGC 532
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 473 ACAGGATTATCAGTATTGCCTCTGTGTTTCTGTATGCAATGTTGACGGATAGGGTCTTGC 532
Query 533 TTGTTGAAGGAGGGGAACAGTTCGCGGATTTATTCTGCGAACCGTTCCTCGATACCACTT 592
||||||||||||| || || ||||||||| ||||||||||||| ||||||||||||||||
Sbjct 533 TTGTTGAAGGAGGAGAGCAATTCGCGGATCTATTCTGCGAACCATTCCTCGATACCACTT 592
Query 593 GGTTACTACCGAAAGATTTCACCTTAGCTAGTCAGTTCAGTGGCTTTGGTCAAAACTCAG 652
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 593 GGCTACTACCGAAAGATTTCACCTTAACTAGTCAGTTCAGTGGCTTTGGTCAAAACTCAG 652
Query 653 CTCACTGCCATGGAGATATGCTGAAGAGGAAACTGATTAATGAATCCTCTGTTTCGTCTC 712
|||| |||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||
Sbjct 653 CTCATTGCCATGGAGATATGCTGAAGAAGAAACTGATTAACGAATCTTCTGTTTTGTCTC 712
Query 713 TGTCTCATCTCTATCTTCATCTAGCTCATGACTACAATGAGCACGACAAAATGTTCTTCT 772
||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 713 TGTCTCATCTCTATCTTCATCTAGCTCATGATTACAACGACCACGACAAAATGTTCTTCT 772
Query 773 GTGAAGAAGATCAAAATCTCTTAAAGAATGTTCCTTGGTTGATCATGAGGACAAACAACT 832
| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 773 GCGCAGAAGATCAGAATCTCTTAGAGAATGTTCCTTGGTTGATCATGAGGACAAACAACT 832
Query 833 TCTTTGCACCGTCTCTTTTCTTGATTTCTTCTTTCGAAGAAGAGCTCGGTATGATGTTTC 892
|||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct 833 TCTTTGCACCGTCTCTCTTCTTGATCCCTTCTTTCGAGGAAGAGCTCGGTATGATGTTTC 892
Query 893 CCGAGAAAGGAACGGTTTTTCACCATTTAGGTCGTTACCTTTTCCATCCTTCAAATCAAG 952
|| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 893 CCAAGAAAGGAACGGTATTTCACCATTTGGGTCGTTACCTTTTCCATCCTTCGAATCAAG 952
Query 953 TCTGGGGACTAATCACAAGATACTATCAAGCTTACTTAGCCAAAGCTGATGAAAGGATTG 1012
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 953 TCTGGGGACTAATCACAAGATACTATCAAGCTTACTTAGCCAAAGCTGATGAGAGGATTG 1012
Query 1013 GTCTTCAAATAAGAGTCTTTGATGAGAAATCCGGCGTATCTCCTCGAGTCACAAAGCAAA 1072
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1013 GTCTTCAAATAAGAGTCTTTGATGAGAAATCCGGCGTATCTCCTCAAGTCACAAAGCAAA 1072
Query 1073 TCATTTCGTGTGTTCAAAACGAGAATCTGTTACCGAGACTAAGCAAAGGTGAAGAACAAT 1132
|||||||||| |||||||||||| || ||||||||| |||||||||||| |||||||||
Sbjct 1073 TCATTTCGTGCGTTCAAAACGAGGATTTGTTACCGAAACTAAGCAAAGGAGAAGAACAAC 1132
Query 1133 ACAAGCAGCCATCAGAAGAAGAGTTGAAACTCAAATCTGTCTTGGTCACCTCTTTAACAA 1192
|||||||||||||||||||||| | |||||||||||| |||||| |||| ||||||||||
Sbjct 1133 ACAAGCAGCCATCAGAAGAAGACTCGAAACTCAAATCGGTCTTGATCACTTCTTTAACAA 1192
Query 1193 CAGGATACTTTGAGATCTTGAAAACAATGTATTGGGAAAATCCAACTGTAACAAGAGATG 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1193 CAGGATACTTTGAGATCTTGAAAACAATGTATTGGGAAAATCCAACTGTAACAGGAGAAG 1252
Query 1253 TGATTGGAATACATCAGCCAAGTCATGAAGGACATCAACAAACAGAGAAGCTAATGCATA 1312
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1253 TGATTGGAATACATCAGCCAAGTCATGAAGGTCATCAACAAACAGAGAAGCTAATGCATA 1312
Query 1313 ACAGGAAAGCTTGGGCAGAGATGTACTTACTCAGCTTAACGGATAAGTTGGTTATTAGTG 1372
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1313 ACAGGAAAGCTTGGGCAGAGATGTACTTACTTAGCTTAACCGATAAGTTGGTTATTAGTG 1372
Query 1373 CTTGGTCTACATTTGGTTATGTAGCTCAAGGACTTGGAGGATTAAGAGCTTGGATTCTGT 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 CTTGGTCTACATTTGGTTATGTAGCTCAAGGACTTGGAGGATTAAGAGCTTGGATTCTGT 1432
Query 1433 ATAAACAAGAGAATCAAACCAACCCAAATCCACCTTGCGGTAGAGCTATGTCACCAGATC 1492
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1433 ATAAACAAGAGAATCAAACCAACCCAAATCCACCTTGTGGTAGAGCTATGTCACCAGATC 1492
Query 1493 CTTGTTTCCATGCTCCTCCTTACTATGATTGCAAAGCAAAGAAAGGAACTGACACTGGTA 1552
||||||||||||| ||||||||||| ||||||||||| ||| ||||||| ||||| ||||
Sbjct 1493 CTTGTTTCCATGCCCCTCCTTACTACGATTGCAAAGCTAAGCAAGGAACCGACACCGGTA 1552
Query 1553 ATGTTGTCCCGCATGTTAGACATTGTGAAGATATTAGCTGGGGACTTAAGCTTGTTGACA 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 ATGTTGTCCCGCATGTTAGACATTGTGAAGATATTAGCTGGGGACTTAAGCTTGTTGACA 1612
Query 1613 ACTTTTA 1619
||| |||
Sbjct 1613 ACTCTTA 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60715850530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5