BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G03220.1
Length=1873
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484227 jgi|Araly1|484227|fgenesh2_kg.5__219__AT2G03220.1 2628 0.0
Ahg312409 jgi|Araly1|312409|fgenesh1_pm.C_scaffold_1001189 279 4e-74
> Ahg484227 jgi|Araly1|484227|fgenesh2_kg.5__219__AT2G03220.1
Length=1863
Score = 2628 bits (1423), Expect = 0.0
Identities = 1709/1846 (93%), Gaps = 23/1846 (1%)
Strand=Plus/Plus
Query 1 AAATAAAGTTATGAAGTCGGTGAGTGACTTTAGAGTCTCCCTCAAGAGCAATCAATGGAT 60
||||||||| ||||||||||||| | || | ||||||||||||||||||||||||||
Sbjct 1 AAATAAAGTAATGAAGTCGGTGACCGTCTCT---GTCTCCCTCAAGAGCAATCAATGGAT 57
Query 61 CAGAATTCGTACAGGAGAAGATCGTCTCCGATCAGAACCACTACCGGCGGTTCAAAGTCC 120
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 58 CAGAATCCGTACAGGAGAAGATCGTCTCCGATCAGAACCACCACCGGCGGTTCAAAGTCC 117
Query 121 GTTAATTTCTCCGAACTACTTCAAATGAAG-TATCTCAGCTCCGGTACGATGAAGCTCAC 179
|| ||||| || || ||||||| ||||| | |||||||| |||||||||||||||||
Sbjct 118 GTAAATTTATCAGAGCTACTTCCGGTGAAGCT-TCTCAGCTTTGGTACGATGAAGCTCAC 176
Query 180 GAGAACCTTCACTACTTGCTTGATAGTCTTCTCTGTACTAGTAGCATTCTCAATGATCTT 239
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 177 GAGAACCTTCACTACTTGCTTGATACTCTTCTCTGTATTAGTAGCATTCTCAATGATCTT 236
Query 240 TCACCAACACCCATCTGATTCAAATCGGATTATGGGTTTCGCCGAAGCTAGAGTTCTCGA 299
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 237 TCACCAACACCCATCTGATTCAAATCGGATAATGGGTTTCGCTGAAGCAAGAGTTCTCGA 296
Query 300 CGCCGGAGTTTTCCCAAATGTTACT-A-A-C-A-TC-AA---TTCTGATAAGCTTCTCGG 350
||||||||||||||||||||||||| | | | | || || ||||||||||||||||||
Sbjct 297 CGCCGGAGTTTTCCCAAATGTTACTAACATCGATTCAAATGGTTCTGATAAGCTTCTCGG 356
Query 351 AGGGCTACTTGCTTCTGGTTTTGATGAAGATTCTTGCCTTAGTAGGTACCAATCAGTTCA 410
||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct 357 AGGACTACTTGCTTCTGGTTTTAATGAAGAGTCTTGCCTTAGTAGGTACCAATCAGTACT 416
Query 411 TTACCGTAAACCTTCACCTTACAAGCCATCTTCTTATCTCA-TCTCTAAGCTTAGAAACT 469
||||||||||||||| ||||||||||| ||| ||||||| | ||||||| ||||||||||
Sbjct 417 TTACCGTAAACCTTCGCCTTACAAGCCTTCTCCTTATCT-AGTCTCTAAACTTAGAAACT 475
Query 470 ACGAAAAGCTTCACAAGCGATGTGGTCCGGGTACTGAATCTTACAAGAAAGCTCTAAAAC 529
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 476 ACGAAATGCTTCACAAGCGATGTGGTCCGGGTACTGAATCTTACAAGAAAGCTCTAAAGC 535
Query 530 AACTTGATCAAGAACATATTGATGGTGATGGTGAATGCAAATATGTTGTGTGGATTTCTT 589
||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 536 AACTTGATCAAGAGCATATTGATGGCAATGGTGAATGCAAATATGTTGTGTGGGTTTCTT 595
Query 590 TTAGCGGCTTAGGGAACAGGATACTTTCTCTAGCCTCGGTTTTTCTTTACGCGCTTTTAA 649
|||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 596 TTAGTGGGTTAGGGAACAGGATACTTTCTCTAGCCTCGGTTTTTCTTTATGCGCTTTTGA 655
Query 650 CGGATAGAGTCTTGCTTGTTGACCGAGGGAAAGACATGGATGATCTCTTTTGCGAGCCGT 709
|| |||||||||||||||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 656 CGAATAGAGTCTTGCTTGTTGACAGAGGGAAAGACATGGATGATCTCTTTTGTGACCCGT 715
Query 710 TTCTCGGTATGTCGTGGTTGCTACCTTTAGATTTCCCTATGACTGATCAGTTTGATGGAT 769
||| ||||||||||||||| || |||||||||||||| |||||||||||||| |||||||
Sbjct 716 TTCCCGGTATGTCGTGGTTACTGCCTTTAGATTTCCCAATGACTGATCAGTTCGATGGAT 775
Query 770 TAAATCAAG-AATCATCTCGTTGTTATGGATATATGGTGAAGAATCAGGTGATTGATACT 828
| |||| || |||| || |||||||||||| |||| ||||||||| ||| ||| |||||
Sbjct 776 TGAATC-AGAAATCCTCGCGTTGTTATGGAGATATAGTGAAGAATGAGGCGATGGATACC 834
Query 829 GAGGGAACTTTGTCTCATCTTTATCTTCATCTTGTTCATGATTATGGAGATCATGATAAG 888
||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 835 GAGAAAACTCTGTCTCATCTTTATCTTCATCTTGTCCATGATTATGGAGATCATGATAAG 894
Query 889 ATGTTCTTCTGTGAAGGAGACC-AAACATTCATCGGGAAAGTCCCTTGGTTGATTGTTAA 947
|||||||||||||||||||||| |||| || || ||||||||||||||||| || || ||
Sbjct 895 ATGTTCTTCTGTGAAGGAGACCAAAAC-TTAATTGGGAAAGTCCCTTGGTTAATCGTCAA 953
Query 948 AACAGACAATTACTTTGTTCCATCTCTGTGGTTAATACCGGGTTTCGATGATGAACTAAA 1007
|||||| |||||||||||||||||||| ||| |||| ||||| |||||||||||||||||
Sbjct 954 AACAGATAATTACTTTGTTCCATCTCTATGGCTAATCCCGGGGTTCGATGATGAACTAAA 1013
Query 1008 CAAGCTATTCCCACAGAAAGCGACTGTCTTTCATCACTTAGGTAGGTATCTTTTTCACCC 1067
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1014 CAAGCTATTCCCGCAGAAAGCGACTGTCTTTCATCACTTAGGTAGATATCTTTTTCATCC 1073
Query 1068 AACTAACCAAGTATGGGGCTTAGTCACTAGATACTACGAAGCTTACTTATCGCATGCGGA 1127
||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1074 AACAAACCAAGTATAGGGCTTAGTCACTAGGTACTACGAAGCTTACTTATCGCATGCGGA 1133
Query 1128 TGAGAAGATTGGGATTCAAGTAAGAGTTTTCGATGAAGACCCGGGTCCATTTCAGCATGT 1187
||||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||
Sbjct 1134 TGAGAAGATTGGGATTCAAGTAAGAGTTTTCGATGTAGGCGCGGGTCCATTTCAGCACGT 1193
Query 1188 GATGGATCAGATTTCATCTTGTACTCAAAAAGAGAAACTTCTACCTGAAGTAGACACACT 1247
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1194 TATGGATCAGATTTCATCTTGTACCCAAAAAGAGAAACTTCTACCTGAAGTAGACACACT 1253
Query 1248 AGTGGAGAGATCTCGCCATGTTA-ATACCCCCAAACACAAAGCCGTGCTTGTCACATCTT 1306
|| || ||||||||||| |||| | ||||||||||||||||| ||||||||||||||||
Sbjct 1254 TGTAGAAAGATCTCGCCAAGTTAGA-ACCCCCAAACACAAAGCTGTGCTTGTCACATCTT 1312
Query 1307 TGAACGCGGGTTACGCGGAGAACTTAAAGAGTATGTATTGGGAATATCCGACATCAACTG 1366
||| | |||| ||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1313 TGAGCTCGGGATACTCAGAGAACTTAAAGAGTATGTATTGGGAATATCCGACATTAACTG 1372
Query 1367 GAGAAATCATCGGTGTTCATCAGCCGAGCCAAGAAGGTTATCAGCAGACCGaaaaaaaGA 1426
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1373 GAGAAATCATCGGTGTTCATCAGCCAAGCCAAGAAGGTTATCAGCAGACGGAAAAAAAGA 1432
Query 1427 TGCATAATGGCAAAGCTCTTGCGGAAATGTATCTTTTGAGTTTGACAGATAATCTTGTGA 1486
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1433 TGCATAATGGCAAAGCTCTTGCGGAAATTTACCTTTTGAGTTTGACAGATAATCTTGTGA 1492
Query 1487 CAAGTGCTTGGTCTACATTTGGATATGTAGCTCAAGGTCTTGGAGGTTTAAAGCCTTGGA 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 CAAGTGCTTGGTCTACATTTGGATATGTAGCTCAAGGTCTTGGAGGTTTAAAGCCTTGGA 1552
Query 1547 TACTCTATAGACCCGAAAACCGTACAACTCCCGATCCTTCGTGTGGTCGGGCTATGTCGA 1606
||||||||| |||||| ||||||||| |||| |||||| |||||||||||||||||||||
Sbjct 1553 TACTCTATAAACCCGAGAACCGTACAGCTCCTGATCCTGCGTGTGGTCGGGCTATGTCGA 1612
Query 1607 TGGAGCCTTGTTTCCACTCGCCTCCATTCTATGATTGTAAAGCGAAAACGGGTATTGACA 1666
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1613 TGGAGCCTTGTTTCCACGCGCCTCCATTCTATGATTGTAAGGCGAAAACGGGTATTGATA 1672
Query 1667 CGGGAACACTAGTTCCTCATGTGAGACATTGTGAGGATATCAGCTGGGGACTTAAGCTAG 1726
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1673 CGGGAAAACTAGTTCCTCATGTGAGACATTGTGAGGATATGAGCTGGGGACTTAAGCTAG 1732
Query 1727 TATGATTTTTTGTGTGCCTTACTCTGTTTTTGATTATTTGATGTATCATGTAACTTCTTA 1786
||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1733 TATGATTTTTT-TGTGATTTACTCTGTTTTTGATAATTTGATGTATCATGTAACTTCTTA 1791
Query 1787 AATTAGCTTTAATAAAGTCAATTTTTGTGCTTTTGACATTTTCTCT 1832
|||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1792 AATTAGCTTTTATAAATTCAATTTTTGTGCTTTTGACATTTTCTCT 1837
> Ahg312409 jgi|Araly1|312409|fgenesh1_pm.C_scaffold_1001189
Length=3378
Score = 279 bits (151), Expect = 4e-74
Identities = 969/1342 (72%), Gaps = 143/1342 (11%)
Strand=Plus/Plus
Query 365 CTGGTTTTGATGAAGATTCTTGCCTT-AGTAGGTACCAATCAGTT-CAT-TACCGTAAAC 421
||| ||| |||||||||||||| ||| |||||||| || || || | | || || || |
Sbjct 212 CTGATTTCGATGAAGATTCTTG-CTTGAGTAGGTATCAGTC--TTCCTTGTATCGCAAGC 268
Query 422 CTTCACCTTACAAGCCATCTTCT---TATCTCA-TCTCTAAGCTTAGAAACTACGA-AAA 476
|||| |||||| || | ||||| ||||| | |||||||||||||| |||| || |
Sbjct 269 CTTCGCCTTAC-AG--AACTTCTGAATATCT-AGTCTCTAAGCTTAGAGACTATGAGCTA 324
Query 477 GCTTCACAAGCGATGTGGTCCGGGTACTGAAT-CTTACAAGAAAGCTCTAA-A-ACAA-C 532
||||||||||| || ||||| || |||| || |||||||||||| | || | | || |
Sbjct 325 -CTTCACAAGCGTTGCGGTCCAGGCACTG-ATGCTTACAAGAAAG--C-AACAGAGAAGC 379
Query 533 TTGATCAAGAACAT----A--TT---GAT-G--GTGATGGTGAATGCAAATATGTTGTGT 580
||| ||| || ||| | || ||| | || ||||||||||||||| ||||||
Sbjct 380 TTGGTCATGATCATGAGAATGTTGGAGATAGCTCTGCTGGTGAATGCAAATACATTGTGT 439
Query 581 GGATTTCT-TTTA-GCGGCTTAGGGAACAGGATACTTTCTCTAGCCTCGGTTTTTCTTTA 638
|| | || |||| | ||||| || ||||| ||||| |||| || || || || || ||
Sbjct 440 GGGTGGCTGTTTATG-GGCTT-GGAAACAGAATACTCACTCTTGCTTCTGTGTTCCTCTA 497
Query 639 CGCGCTTTTAACGGATAGAGTC-TTGCTTGTTGACCGAGGGAAAGACA-TGGATGATCTC 696
|| || || || || ||| || || ||||| |||| | | || || | | | |||||||
Sbjct 498 TGCTCTCTTGACAGAGAGAATCATT-CTTGTGGACCAACGCAAGGATATTAG-TGATCTC 555
Query 697 TTTTGCGAGCCGTTTCTC-GGTA-TGTCGTGGTTGCTACCT-TTAGA-TTTCCCTATGAC 752
|| || ||||| |||| | |||| | || ||||| || ||| || || ||||| | |||
Sbjct 556 TTCTGTGAGCCTTTTC-CGGGTACT-TCCTGGTTACTTCCTCTT-GATTTTCCAT-TGA- 610
Query 753 T-GATCAGTTTGATGGATTAAATCAAGAATCATCTCG--TTGTTATGG-ATATATGGTGA 808
| | |||| | ||| | || || | |||| | |||| |||||| || | | ||| |||
Sbjct 611 TGGGTCAGATAGATAGTTTCAACCGGGAAT-A-CTCGCATTGTTACGGAACA-ATGTTGA 667
Query 809 AGAATCAGGTGATTGATACT-GAGGGA-ACT-TTGTCTCATCTTTATCTTCATCTTGTTC 865
||||||| ||| | ||| || | | | || |||||||||||||||||| | |
Sbjct 668 AGAATCATACCATT-A-ACTCGA-CTACAATCCCATCACATCTTTATCTTCATCTTCTCC 724
Query 866 ATGATTATGGAGATCATGATAAGATGTTCTTCTGTGA-AGGAGACCAAACATTCATCGGG 924
||||||| ||||||| || |||||||||||||| | | | || ||| | || ||||
Sbjct 725 ATGATTACAGAGATCAGGACAAGATGTTCTTCTGCCATAAG-GATCAATCTTTAATCGAC 783
Query 925 AAAGTCCCTTGGTTGATTGTTAAA-ACAGACAATTACTTTGTTCCATCTCTGTGG-TTAA 982
|||||||||||| || |||| ||| || || ||||||| |||||||||| ||| | ||
Sbjct 784 AAAGTCCCTTGGCTGGTTGTCAAATCCA-ACCTTTACTTTATTCCATCTCTATGGCTGAA 842
Query 983 TACCGGGTTTCGATGATGAACTAAACAAGCTATTCCCACAGAAAG-CGACTGTCTTTC-A 1040
| || ||||| | ||||| | |||||||||||| ||||||| | || ||| ||| |
Sbjct 843 T-CCTAGTTTCCAACCCGAACTCATCAAGCTATTCCCGCAGAAAGAC-ACCGTC-TTCTA 899
Query 1041 TCACTTAGGTA-GGTATCTTTTTCACCCAACTAACCAAGTATGGGGCT-TAGTCACTAGA 1098
||| | || | | |||||||||||||| || |||||||| ||||| | | ||||| |||
Sbjct 900 CCACCT-GGCACGCTATCTTTTTCACCCGACAAACCAAGTCTGGGG-TATGGTCACCAGA 957
Query 1099 TACTACGAA-GCTTACTTATCGCA-TGCGGATGAGAAGA-TTGGGATTCAAGTAAGAGTT 1155
| |||| || || |||||||| | || || ||| | | | ||||||||| || | |||
Sbjct 958 TCCTAC-AATGCATACTTATC-AAGAGCAGACGAG-ATACTCGGGATTCAAATACGGGTT 1014
Query 1156 TTCGATGAAGACCCGGGT--CCATTT-CAGCATGTGATGGATCAGAT-TTCATCTTGTAC 1211
||| | | ||| | | |||| ||||| || ||| | ||||| | | | |||||
Sbjct 1015 TTC-A-GCAGA-CAAACTAAATATTTCCAGCACGTAATGAACCAGATCGT-AGCCTGTAC 1070
Query 1212 TCAAAAAGAGAAACT-TCTACCTGAAGTAGAC-ACACTAGTGGAGAGATCTC--GCCA-T 1266
|||| ||||||||| | ||||||||| || | || | | ||||| ||| | | || |
Sbjct 1071 ACAAAGAGAGAAACTGT-TACCTGAAGCAG-CTACGC-A-AGGAGA-ATCACAAGTCACT 1125
Query 1267 GTTA-AT---A-CC-CCCAAACACAAAGCCGTGCTTGTCACATCTTTGAA-CGCGGGTTA 1319
|| || | || ||||||| ||||| || || ||||||||| |||| | | | ||
Sbjct 1126 AATACATCAAATCCTCCCAAACTTAAAGCTGTCCTGGTCACATCTCTGAATC-CAGAATA 1184
Query 1320 CGCGGAGAACTTAAAGAGTATGTATTGGGAATATCCGACAT-CAACTGGAGAAATCA-TC 1377
| | | ||| |||||| |||||||||||| || || | |||| ||||| || | |
Sbjct 1185 CTCTAATAACCTAAAGAACATGTATTGGGAACGCCCAAC-TACAACAGGAGACAT-AGTA 1242
Query 1378 GGTGTTCATCAGCC--G-A-G-----CCAAG-AAGGTTATCAGCAGACCGaaaaaaaGAT 1427
||| ||||||| | | | | || |||||| |||||| || || || ||| |
Sbjct 1243 AAAGTTTATCAGCCAAGTAGGAAAAAACGAGAAAGGTT-TCAGCAAACAGACAAGAAGCT 1301
Query 1428 GCATAATGGC-AAA-GCTCTTGCGGAAATGTATCTTTTGAGTTTGACAGAT-AATCTTGT 1484
|| | | ||| || || || || ||||| || | || | || ||| || || |
Sbjct 1302 TCACGA--CCAAAAGGCACTCGCAGAGATGTACCTCCTAAGCCTAACTGATCAA-CTAAT 1358
Query 1485 GACAAG-TGCTTGGTCTACATTTGGATATGTAGCTCAAGGTCTTGGAGGTTTAAAGCCTT 1543
||||| | ||| ||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1359 CACAAGCT-CTTCGTCAACATTTGGATATGTAGCTCAAGGTCTTGGAGGGTTAAAGCCAT 1417
Query 1544 GGATACTCTATAGACCCGAA-AACCGTACAA--CTCCCGATCCTTCGTGTGGTCG-GGCT 1599
|||||||||| | ||| || || || ||| |||| |||| | |||||||| || |
Sbjct 1418 GGATACTCTACACACCA-AAGAA--GTTCAAAACTCCTAATCCACCATGTGGTCGCGG-T 1473
Query 1600 ATGTCGATGGAGCCTTGTTTCC 1621
| || ||||||||||||||||
Sbjct 1474 GTATCCATGGAGCCTTGTTTCC 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70352682515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5