BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G03230.1 Length=459 Score E Sequences producing significant alignments: (Bits) Value Ahg484228 jgi|Araly1|484228|fgenesh2_kg.5__220__AT2G03230.1 520 5e-147 > Ahg484228 jgi|Araly1|484228|fgenesh2_kg.5__220__AT2G03230.1 Length=408 Score = 520 bits (281), Expect = 5e-147 Identities = 339/368 (92%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 74 AAGGAGGAGATTCATCTGCTGCTTCGGAAGATCCGAACAAATCCAAAACAGTAAGTTCTG 133 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 41 AAGGAGGAGATTCATCTGCTGCTTCGCAAGATCCGAACAAATCCAAAACAGTAAGTTCTG 100 Query 134 ATGATGATTTGAGTGAGACTAACAAGGAGAAAGAGGAAGAAGATTGTGAAGAGTGTTGGC 193 |||| |||||| ||| ||||| |||||||||||||||||||||||||| |||||||||| Sbjct 101 ATGACAATTTGAATGAAACTAATAAGGAGAAAGAGGAAGAAGATTGTGATGAGTGTTGGC 160 Query 194 TTAGTCGGTATTTGAAAAAAGGTGATTGCAAAGATGCATTCATAGAAGTTGATCATTGTA 253 ||||||||| |||||| ||||||| ||||| ||||||||||||||||||||||| ||| Sbjct 161 TTAGTCGGTTTTTGAAGAAAGGTGGGTGCAAGGATGCATTCATAGAAGTTGATCACTGTT 220 Query 254 GGGAAGTGAAAGATGACGGCACGAACTGTCGAGATGCTAGATTGAAGCTGATTACATGTA 313 ||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 221 GGGAAGTGAAAGATGGCGGCACGAATTGTCGAGATGCTAGATTGAAGCTGAATACATGTA 280 Query 314 TGTATACTAACGTCGATTACTACGGACCGTTTCTAGCAATGCAGAAAGAGATGCGGACTC 373 ||||| |||||||||||||||| |||| || ||| || ||||||||||||| | |||| Sbjct 281 TGTATGCTAACGTCGATTACTATGGACAGTATCTGGCGATGCAGAAAGAGAGGTTTACTC 340 Query 374 AGTCGTTAAAGGAGTTGGAACAAGGGGAGGAGGCAGCCGCTGCGGCgaagaagaaggaag 433 |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 341 AGTCGTTAAAGGAGTTGGAAAAAGGGGAGGAGGCAGCCGCTGCGGCCAAGAAGAAGGAAG 400 Query 434 aagaagaa 441 |||||||| Sbjct 401 AAGAAGAA 408 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16597681215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5