BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G03230.1

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484228 jgi|Araly1|484228|fgenesh2_kg.5__220__AT2G03230.1          520    5e-147


> Ahg484228 jgi|Araly1|484228|fgenesh2_kg.5__220__AT2G03230.1
Length=408

 Score =  520 bits (281),  Expect = 5e-147
 Identities = 339/368 (92%), Gaps = 0/368 (0%)
 Strand=Plus/Plus

Query  74   AAGGAGGAGATTCATCTGCTGCTTCGGAAGATCCGAACAAATCCAAAACAGTAAGTTCTG  133
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  41   AAGGAGGAGATTCATCTGCTGCTTCGCAAGATCCGAACAAATCCAAAACAGTAAGTTCTG  100

Query  134  ATGATGATTTGAGTGAGACTAACAAGGAGAAAGAGGAAGAAGATTGTGAAGAGTGTTGGC  193
            ||||  |||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  101  ATGACAATTTGAATGAAACTAATAAGGAGAAAGAGGAAGAAGATTGTGATGAGTGTTGGC  160

Query  194  TTAGTCGGTATTTGAAAAAAGGTGATTGCAAAGATGCATTCATAGAAGTTGATCATTGTA  253
            ||||||||| |||||| |||||||  ||||| ||||||||||||||||||||||| ||| 
Sbjct  161  TTAGTCGGTTTTTGAAGAAAGGTGGGTGCAAGGATGCATTCATAGAAGTTGATCACTGTT  220

Query  254  GGGAAGTGAAAGATGACGGCACGAACTGTCGAGATGCTAGATTGAAGCTGATTACATGTA  313
            ||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct  221  GGGAAGTGAAAGATGGCGGCACGAATTGTCGAGATGCTAGATTGAAGCTGAATACATGTA  280

Query  314  TGTATACTAACGTCGATTACTACGGACCGTTTCTAGCAATGCAGAAAGAGATGCGGACTC  373
            ||||| |||||||||||||||| |||| || ||| || ||||||||||||| |   ||||
Sbjct  281  TGTATGCTAACGTCGATTACTATGGACAGTATCTGGCGATGCAGAAAGAGAGGTTTACTC  340

Query  374  AGTCGTTAAAGGAGTTGGAACAAGGGGAGGAGGCAGCCGCTGCGGCgaagaagaaggaag  433
            |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct  341  AGTCGTTAAAGGAGTTGGAAAAAGGGGAGGAGGCAGCCGCTGCGGCCAAGAAGAAGGAAG  400

Query  434  aagaagaa  441
            ||||||||
Sbjct  401  AAGAAGAA  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16597681215


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5